RchiOBHm_Chr3g0471041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000195
Physical Location & Seq
Forward (+)
16967287 .. 16969212
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43679

Sequence Viewer

Length: 1299 bp
ATGTCCTCTTGCAATGAAATTTGTGCTTTGTGTAATTCTCCTTGGCATTCACCTTTTGAGTGCTCTTTGAGATTTGAGTGCCCGGATTTTATGCAAGAGTGTGAGTACAAGATGGGCATGTATCAAGAGACATTTATACCCAATGCATATCCACAAGAAGAAGCTTATGAGCCTAGTAAGGAATTTGTTGACGGACTACTAGCTCAATTGCATGCCTCCCAAGCTCTATTACAAGCCTTTCAAGTTAGTATTTCACAAGAGACCATGGTTCCCGAAGCATATCCTCATGAGCAAGCATATGAGTCTAGGAGACCTTCTCTTGAAGAATTGCTAGCTCAATTGCAAGCTTCCCAAGCTCACTTGCAAGCCTCACAAGCTCAATTGCAAGCTTCTCAAGAAATGCTTGCACATTCCAATGAGCAACTTGAAGCAAGTTTTGCACAAAAGTCACCCTTCACCATTTATGAGCATGAATCTTTCTTTGACCAAGTGGAGCCTATTTCAAGAGAAGAAGTGTATATCGAGCATCTTGAGCAAGAATCCTTTATGCAAGTTGAAAATGGTGCTAGTGATGTTGATGTACAAGAAATTGAGGTTGGTTATGAAAGTTTCAATGCAAGTGGGGTGAGAGACTACACTTCGGAGGAACCGGTGCAATATTGGAAATCTAATCTTCACAATGAAGAGGAGGTATATGAAGTTGATTCCGACGAAGAGGATAGCTTCTGTAGTGAGGAAGATGTGGAGCTTGAAGACTTACACCATGATCCCTTAATCGTTGAGGTCGATATTCCCAAGGAGAAAGAGAGTCCTTCAATACCTTGTGATGATGAAGAAATTGAAGAGCCAAGGACTTTCTTGCCTCCCATATTCATGGAGATCCATCATGAGCTTCCCAAGGTGGAGAGTAAGACATTGAGCACTTATGTTCTTAATGGAAAGATTGAGATCAAGGTACTTTTACCTCTCAATCCACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAGTGAACCTCTTGCACTTAACCTTTCCCATCACTCGCAAGAGCTTCTACCACCTATTGTTCCTATGAGCATCATTTCTACACCACTTGAGAAGGAGAAGGCAAGGAGATTGATCCATAATAGAAAAATGGAGAAGAATGGGAAGATTAAGAAGCTACACTTTTGGCCACCAATTGGAGTATTCTTATGTAGCTCTTGGTCTTGCCTCTATGATACATCAATGAGTCCCTTAGCCCCAAACAATAGAGTGGTCGTACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

432

Amino Acids

49.64

Weight (kDa)

4.5

Isoelectric Point (pI)

67.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 983, 1196
AclWI GGATC 3 cut(s) 761, 874, 1129
AcoI YGGCCR 1 cut(s) 1187
AcsI RAATTY 2 cut(s) 18, 182
AfaI GTAC 4 cut(s) 107, 582, 957, 1278
AfiI CCNNNNNNNGG 2 cut(s) 983, 1196
AgeI ACCGGT 1 cut(s) 649
AgsI TTSAA 9 cut(s) 242, 323, 428, 504, 557, 613, 752, 816, 842
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
Alw21I GWGCWC 2 cut(s) 65, 923
Alw26I GTCTC 4 cut(s) 122, 254, 304, 624
AlwI GGATC 3 cut(s) 761, 874, 1129
AoxI GGCC 1 cut(s) 1187
ApoI RAATTY 2 cut(s) 18, 182
AsiGI ACCGGT 1 cut(s) 649
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 5 cut(s) 42, 441, 448, 637, 1018
AsuNHI GCTAGC 1 cut(s) 331
BaeGI GKGCMC 1 cut(s) 83
BalI TGGCCA 1 cut(s) 1189
BbsI GAAGAC 1 cut(s) 759
Bbv12I GWGCWC 2 cut(s) 65, 923
BccI CCATC 4 cut(s) 106, 891, 1003, 1059
BciVI GTATCC 1 cut(s) 1299
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 4 cut(s) 122, 254, 304, 624
BfaI CTAG 5 cut(s) 174, 200, 306, 332, 567
BfmI CTRYAG 1 cut(s) 727
BfuI GTATCC 1 cut(s) 1299
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 3 cut(s) 270, 495, 648
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 2 cut(s) 535, 1101
BmtI GCTAGC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 759
BplI GAGNNNNNCTC 2 cut(s) 301, 333
Bpu10I CCTNAGC 1 cut(s) 1252
BpuEI CTTGAG 3 cut(s) 378, 551, 1130
BpuMI CCSGG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 947
BsaI GGTCTC 2 cut(s) 254, 304
BsaJI CCNNGG 5 cut(s) 41, 264, 795, 848, 897
BsaWI WCCGGW 1 cut(s) 649
Bsc4I CCNNNNNNNGG 2 cut(s) 983, 1196
Bse118I RCCGGY 1 cut(s) 649
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 947
BseDI CCNNGG 5 cut(s) 41, 264, 795, 848, 897
BseJI GATNNNNATC 1 cut(s) 947
BseLI CCNNNNNNNGG 2 cut(s) 983, 1196
BseMI GCAATG 1 cut(s) 19
BseRI GAGGAG 1 cut(s) 701
BseSI GKGCMC 1 cut(s) 83
BshFI GGCC 1 cut(s) 1189
BshTI ACCGGT 1 cut(s) 649
BsiHKAI GWGCWC 2 cut(s) 65, 923
BsiSI CCGG 2 cut(s) 83, 650
BslFI GGGAC 1 cut(s) 1233
BslI CCNNNNNNNGG 2 cut(s) 983, 1196
BsmAI GTCTC 4 cut(s) 122, 254, 304, 624
BsmFI GGGAC 1 cut(s) 1233
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 1189
Bso31I GGTCTC 2 cut(s) 254, 304
Bsp1286I GDGCHC 3 cut(s) 65, 83, 923
Bsp1407I TGTACA 1 cut(s) 580
Bsp143I GATC 4 cut(s) 766, 879, 948, 1134
Bsp19I CCATGG 1 cut(s) 264
BspANI GGCC 1 cut(s) 1189
BspHI TCATGA 2 cut(s) 286, 886
BspLI GGNNCC 3 cut(s) 270, 495, 648
BspOI GCTAGC 1 cut(s) 335
BspPI GGATC 3 cut(s) 761, 874, 1129
BspQI GCTCTTC 1 cut(s) 837
BspTNI GGTCTC 2 cut(s) 254, 304
BsrDI GCAATG 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 649
BsrGI TGTACA 1 cut(s) 580
BssAI RCCGGY 1 cut(s) 649
BssECI CCNNGG 5 cut(s) 41, 264, 795, 848, 897
BssMI GATC 4 cut(s) 766, 879, 948, 1134
BssT1I CCWWGG 5 cut(s) 41, 264, 795, 848, 897
Bst6I CTCTTC 3 cut(s) 678, 708, 837
BstAPI GCANNNNNTGC 1 cut(s) 437
BstAUI TGTACA 1 cut(s) 580
BstC8I GCNNGC 7 cut(s) 213, 294, 333, 345, 366, 387, 405
BstDEI CTNAG 1 cut(s) 1252
BstDSI CCRYGG 1 cut(s) 264
BstKTI GATC 4 cut(s) 769, 882, 951, 1137
BstMAI GTCTC 4 cut(s) 122, 254, 304, 624
BstMBI GATC 4 cut(s) 766, 879, 948, 1134
BstMWI GCNNNNNNNGC 5 cut(s) 221, 353, 374, 437, 532
BstNSI RCATGY 2 cut(s) 121, 215
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 727
BstSLI GKGCMC 1 cut(s) 83
BstV2I GAAGAC 1 cut(s) 759
BstX2I RGATCY 1 cut(s) 879
BstXI CCANNNNNNTGG 1 cut(s) 874
BstYI RGATCY 1 cut(s) 879
BsuI GTATCC 1 cut(s) 1299
BsuRI GGCC 1 cut(s) 1189
BtgI CCRYGG 1 cut(s) 264
Cac8I GCNNGC 7 cut(s) 213, 294, 333, 345, 366, 387, 405
CciI TCATGA 2 cut(s) 286, 886
Cfr10I RCCGGY 1 cut(s) 649
Csp6I GTAC 4 cut(s) 106, 581, 956, 1277
CspAI ACCGGT 1 cut(s) 649
CspCI CAANNNNNGTGG 2 cut(s) 601, 636
CviAII CATG 8 cut(s) 118, 212, 265, 287, 470, 764, 874, 887
CviQI GTAC 4 cut(s) 106, 581, 956, 1277
DdeI CTNAG 1 cut(s) 1252
DpnI GATC 4 cut(s) 768, 881, 950, 1136
DpnII GATC 4 cut(s) 766, 879, 948, 1134
EaeI YGGCCR 1 cut(s) 1187
Eam1104I CTCTTC 3 cut(s) 678, 708, 837
EarI CTCTTC 3 cut(s) 678, 708, 837
Eco130I CCWWGG 5 cut(s) 41, 264, 795, 848, 897
Eco31I GGTCTC 2 cut(s) 254, 304
EcoT14I CCWWGG 5 cut(s) 41, 264, 795, 848, 897
EcoT22I ATGCAT 1 cut(s) 148
ErhI CCWWGG 5 cut(s) 41, 264, 795, 848, 897
FaeI CATG 8 cut(s) 121, 215, 268, 290, 473, 767, 877, 890
FalI AAGNNNNNCTT 6 cut(s) 387, 419, 437, 469, 1166, 1198
FaqI GGGAC 1 cut(s) 1233
FatI CATG 8 cut(s) 117, 211, 264, 286, 469, 763, 873, 886
FauNDI CATATG 1 cut(s) 298
FspBI CTAG 5 cut(s) 174, 200, 306, 332, 567
HaeIII GGCC 1 cut(s) 1189
HapII CCGG 2 cut(s) 83, 650
Hin1II CATG 8 cut(s) 121, 215, 268, 290, 473, 767, 877, 890
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 3 cut(s) 162, 345, 387
HinfI GANTC 6 cut(s) 302, 473, 539, 704, 808, 1246
HpaII CCGG 2 cut(s) 83, 650
HphI GGTGA 5 cut(s) 42, 441, 448, 637, 1018
Hpy166II GTNNAC 2 cut(s) 190, 1028
Hpy188I TCNGA 2 cut(s) 643, 709
Hpy188III TCNNGA 8 cut(s) 125, 272, 287, 320, 395, 504, 530, 887
Hpy8I GTNNAC 2 cut(s) 190, 1028
Hpy99I CGWCG 1 cut(s) 713
HpyAV CCTTC 5 cut(s) 324, 463, 822, 1108, 1114
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 353, 374, 437, 532
HpyF3I CTNAG 1 cut(s) 1252
Hsp92II CATG 8 cut(s) 121, 215, 268, 290, 473, 767, 877, 890
Kzo9I GATC 4 cut(s) 766, 879, 948, 1134
LguI GCTCTTC 1 cut(s) 837
LmnI GCTCC 2 cut(s) 493, 745
LpnPI CCDG 2 cut(s) 96, 663
LweI GCATC 2 cut(s) 535, 1101
MaeI CTAG 5 cut(s) 174, 200, 306, 332, 567
MaeIII GTNAC 1 cut(s) 447
MalI GATC 4 cut(s) 768, 881, 950, 1136
MboI GATC 4 cut(s) 766, 879, 948, 1134
MfeI CAATTG 4 cut(s) 206, 338, 380, 1194
MflI RGATCY 1 cut(s) 879
MhlI GDGCHC 3 cut(s) 65, 83, 923
MlsI TGGCCA 1 cut(s) 1189
MluNI TGGCCA 1 cut(s) 1189
MlyI GAGTC 3 cut(s) 311, 817, 1255
MmeI TCCRAC 1 cut(s) 732
Mox20I TGGCCA 1 cut(s) 1189
Mph1103I ATGCAT 1 cut(s) 148
MscI TGGCCA 1 cut(s) 1189
MseI TTAA 5 cut(s) 773, 933, 980, 1041, 1170
MslI CAYNNNNRTG 2 cut(s) 414, 872
Msp20I TGGCCA 1 cut(s) 1189
MspI CCGG 2 cut(s) 83, 650
MspR9I CCNGG 1 cut(s) 83
MunI CAATTG 4 cut(s) 206, 338, 380, 1194
Mva1269I GAATGC 1 cut(s) 46
MwoI GCNNNNNNNGC 5 cut(s) 221, 353, 374, 437, 532
NciI CCSGG 1 cut(s) 83
NcoI CCATGG 1 cut(s) 264
NdeI CATATG 1 cut(s) 298
NdeII GATC 4 cut(s) 766, 879, 948, 1134
NheI GCTAGC 1 cut(s) 331
NlaIII CATG 8 cut(s) 121, 215, 268, 290, 473, 767, 877, 890
NlaIV GGNNCC 3 cut(s) 270, 495, 648
NmuCI GTSAC 1 cut(s) 447
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 2 cut(s) 121, 215
PaeI GCATGC 1 cut(s) 215
PagI TCATGA 2 cut(s) 286, 886
PciSI GCTCTTC 1 cut(s) 837
PcsI WCGNNNNNNNCGW 1 cut(s) 783
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 3 cut(s) 473, 539, 704
PflMI CCANNNNNTGG 2 cut(s) 983, 1196
PinAI ACCGGT 1 cut(s) 649
PleI GAGTC 3 cut(s) 310, 816, 1254
PpsI GAGTC 3 cut(s) 310, 816, 1254
PspN4I GGNNCC 3 cut(s) 270, 495, 648
PsuI RGATCY 1 cut(s) 879
RsaI GTAC 4 cut(s) 107, 582, 957, 1278
RsaNI GTAC 4 cut(s) 106, 581, 956, 1277
RseI CAYNNNNRTG 2 cut(s) 414, 872
SapI GCTCTTC 1 cut(s) 837
SaqAI TTAA 5 cut(s) 773, 933, 980, 1041, 1170
Sau3AI GATC 4 cut(s) 766, 879, 948, 1134
SchI GAGTC 3 cut(s) 311, 817, 1255
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 3 cut(s) 65, 83, 923
SfaNI GCATC 2 cut(s) 535, 1101
SfcI CTRYAG 1 cut(s) 727
SmiMI CAYNNNNRTG 2 cut(s) 414, 872
SmlI CTYRAG 4 cut(s) 393, 530, 1109, 1280
SmoI CTYRAG 4 cut(s) 393, 530, 1109, 1280
SphI GCATGC 1 cut(s) 215
SspI AATATT 1 cut(s) 659
SspMI CTAG 5 cut(s) 174, 200, 306, 332, 567
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 5 cut(s) 41, 264, 795, 848, 897
TaqI TCGA 2 cut(s) 522, 786
TatI WGTACW 2 cut(s) 105, 580
TfiI GAWTC 3 cut(s) 473, 539, 704
Tru1I TTAA 5 cut(s) 773, 933, 980, 1041, 1170
Tru9I TTAA 5 cut(s) 773, 933, 980, 1041, 1170
TseFI GTSAC 1 cut(s) 447
Tsp45I GTSAC 1 cut(s) 447
TspDTI ATGAA 7 cut(s) 30, 486, 618, 696, 711, 846, 862
TspGWI ACGGA 1 cut(s) 207
Van91I CCANNNNNTGG 2 cut(s) 983, 1196
XapI RAATTY 2 cut(s) 18, 182
XceI RCATGY 2 cut(s) 121, 215
XspI CTAG 5 cut(s) 174, 200, 306, 332, 567
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.