Rroxscaffold_5G00378960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000195
Physical Location & Seq
Forward (+)
59491539 .. 59492534
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378960.1

Sequence Viewer

Length: 918 bp
ATGCTTATACATTCCAATGAGCAACTTGAGGCTAGTCTTGCACAAGAGCCACCATTCACCATTTATGAGCATGAATCTTTCTTTGACCAAGTGGAGCCTATTTCAAGAGAAGAAGTGCATATCGAGCATCTTAAGCAAGAGTCCTTTATGCAAGTTGAAAATGATTATAGTGATGTTGATGTACAAGAAAGTGAGCTTGGTTTTGAAAATTCCAATGCAAGTGGGGTGAGAGACTATATTTCAGAGGAATGGGTGCAATATTGGAAATCTAAGCTTCCAAATGGAGGGAAGATATTTGAAGATGATTCCGAAGAAGATGATGTCTTGTCTAGTGATGAGGATGCGGAATTTGAAGTTATACACCATAATCTCTTTTTCATTGAGGAGGATGCGGAGTTCAAAGTCGATGTTCCCAAGGAGGAAGAGAGTCCTTCAATACTTTGTGATGGTCAAGAAATTGAAGAGCCAAGGACTTTCTCTCCTCCTAAATCCAAGGAGATCCATCATGAGTTTCCTAAGGTGGAGAGTAGAACATTGAGCACTTATGTTCTTAATGAGAGGAATGGGATCAATGTACTTTTACCTCCCAATCCACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGAAAATAGAGCACTTACACTCACCCTTTCCCATTACTTTCAAGAGCTTCTACCACCTATTGTTCCTATGAGCATCAATTCTACACCACTTGAGAAGGAGAAGGCAAGGATATTGATTCCTAGAAGAAAAATTGAGAAGAAGGGGAAGATTAAGAAGCTACACTTTTGGCCACCAATTGGAGTATTCTTATGTAGCTCTTGGTCTTGCCTTTATGACACGTCAAGGAGTCCCTTAGCCCCAAACAATAGGGTGGTCATATTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

35.46

Weight (kDa)

4.69

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 602, 815
AciI CCGC 2 cut(s) 344, 392
AclWI GGATC 2 cut(s) 493, 575
AcoI YGGCCR 1 cut(s) 806
AcsI RAATTY 2 cut(s) 208, 347
AfaI GTAC 2 cut(s) 183, 576
AfiI CCNNNNNNNGG 3 cut(s) 284, 602, 815
AflII CTTAAG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 855
AgsI TTSAA 9 cut(s) 105, 158, 206, 299, 353, 400, 435, 461, 680
AjiI CACGTC 1 cut(s) 858
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AloI GAACNNNNNNTCC 2 cut(s) 380, 412
AluBI AGCT 5 cut(s) 196, 274, 685, 796, 834
AluI AGCT 5 cut(s) 196, 274, 685, 796, 834
Alw21I GWGCWC 2 cut(s) 542, 652
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 2 cut(s) 493, 575
AoxI GGCC 1 cut(s) 806
ApoI RAATTY 2 cut(s) 208, 347
AsuHPI GGTGA 4 cut(s) 49, 238, 637, 652
AxyI CCTNAGG 1 cut(s) 516
BalI TGGCCA 1 cut(s) 808
Bbv12I GWGCWC 2 cut(s) 542, 652
BccI CCATC 3 cut(s) 440, 510, 622
BciVI GTATCC 1 cut(s) 918
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 3 cut(s) 33, 330, 759
BfrI CTTAAG 1 cut(s) 131
BfuI GTATCC 1 cut(s) 918
BmgBI CACGTC 1 cut(s) 858
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 4 cut(s) 136, 331, 379, 720
Bpu10I CCTNAGC 1 cut(s) 871
BpuEI CTTGAG 2 cut(s) 47, 749
BsaJI CCNNGG 3 cut(s) 414, 467, 492
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 602, 815
Bse21I CCTNAGG 1 cut(s) 516
BseDI CCNNGG 3 cut(s) 414, 467, 492
BseGI GGATG 2 cut(s) 346, 394
BseLI CCNNNNNNNGG 3 cut(s) 284, 602, 815
BseRI GAGGAG 2 cut(s) 398, 471
BshFI GGCC 1 cut(s) 808
BsiHKAI GWGCWC 2 cut(s) 542, 652
BslFI GGGAC 1 cut(s) 852
BslI CCNNNNNNNGG 3 cut(s) 284, 602, 815
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 852
BsnI GGCC 1 cut(s) 808
Bsp1286I GDGCHC 2 cut(s) 542, 652
Bsp1407I TGTACA 1 cut(s) 181
Bsp143I GATC 2 cut(s) 498, 567
BspACI CCGC 2 cut(s) 344, 392
BspANI GGCC 1 cut(s) 808
BspHI TCATGA 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 2 cut(s) 493, 575
BspQI GCTCTTC 1 cut(s) 456
BspTI CTTAAG 1 cut(s) 131
BsrGI TGTACA 1 cut(s) 181
BssECI CCNNGG 3 cut(s) 414, 467, 492
BssMI GATC 2 cut(s) 498, 567
BssT1I CCWWGG 3 cut(s) 414, 467, 492
Bst6I CTCTTC 2 cut(s) 417, 456
BstAFI CTTAAG 1 cut(s) 131
BstAUI TGTACA 1 cut(s) 181
BstDEI CTNAG 3 cut(s) 270, 516, 871
BstF5I GGATG 2 cut(s) 346, 394
BstKTI GATC 2 cut(s) 501, 570
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 2 cut(s) 498, 567
BstMWI GCNNNNNNNGC 3 cut(s) 38, 124, 133
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
Bsu36I CCTNAGG 1 cut(s) 516
BsuI GTATCC 1 cut(s) 918
BsuRI GGCC 1 cut(s) 808
BtrI CACGTC 1 cut(s) 858
BtsCI GGATG 2 cut(s) 346, 394
CciI TCATGA 1 cut(s) 505
Csp6I GTAC 2 cut(s) 182, 575
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 2 cut(s) 71, 506
CviQI GTAC 2 cut(s) 182, 575
DdeI CTNAG 3 cut(s) 270, 516, 871
DpnI GATC 2 cut(s) 500, 569
DpnII GATC 2 cut(s) 498, 567
EaeI YGGCCR 1 cut(s) 806
Eam1104I CTCTTC 2 cut(s) 417, 456
EarI CTCTTC 2 cut(s) 417, 456
Eco130I CCWWGG 3 cut(s) 414, 467, 492
Eco81I CCTNAGG 1 cut(s) 516
EcoT14I CCWWGG 3 cut(s) 414, 467, 492
ErhI CCWWGG 3 cut(s) 414, 467, 492
FaeI CATG 2 cut(s) 74, 509
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FaqI GGGAC 1 cut(s) 852
FatI CATG 2 cut(s) 70, 505
FokI GGATG 2 cut(s) 353, 401
FspBI CTAG 3 cut(s) 33, 330, 759
HaeIII GGCC 1 cut(s) 808
Hin1II CATG 2 cut(s) 74, 509
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 6 cut(s) 74, 140, 305, 427, 754, 865
HphI GGTGA 4 cut(s) 49, 238, 637, 652
Hpy188I TCNGA 2 cut(s) 244, 310
Hpy188III TCNNGA 4 cut(s) 105, 452, 506, 680
HpyAV CCTTC 4 cut(s) 441, 727, 733, 772
HpyCH4IV ACGT 1 cut(s) 857
HpyCH4V TGCA 5 cut(s) 41, 118, 151, 218, 256
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 124, 133
HpyF3I CTNAG 3 cut(s) 270, 516, 871
HpySE526I ACGT 1 cut(s) 857
Hsp92II CATG 2 cut(s) 74, 509
Kzo9I GATC 2 cut(s) 498, 567
LguI GCTCTTC 1 cut(s) 456
LmnI GCTCC 1 cut(s) 94
LweI GCATC 4 cut(s) 136, 331, 379, 720
MaeI CTAG 3 cut(s) 33, 330, 759
MaeII ACGT 1 cut(s) 857
MalI GATC 2 cut(s) 500, 569
MboI GATC 2 cut(s) 498, 567
MfeI CAATTG 1 cut(s) 813
MflI RGATCY 1 cut(s) 498
MhlI GDGCHC 2 cut(s) 542, 652
MlsI TGGCCA 1 cut(s) 808
MluCI AATT 6 cut(s) 208, 347, 456, 715, 768, 813
MluNI TGGCCA 1 cut(s) 808
MlyI GAGTC 3 cut(s) 149, 436, 874
Mox20I TGGCCA 1 cut(s) 808
MscI TGGCCA 1 cut(s) 808
MseI TTAA 4 cut(s) 132, 552, 599, 789
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 808
MspCI CTTAAG 1 cut(s) 131
MunI CAATTG 1 cut(s) 813
MwoI GCNNNNNNNGC 3 cut(s) 38, 124, 133
NdeII GATC 2 cut(s) 498, 567
NlaIII CATG 2 cut(s) 74, 509
NlaIV GGNNCC 1 cut(s) 96
PagI TCATGA 1 cut(s) 505
PciSI GCTCTTC 1 cut(s) 456
PfeI GAWTC 3 cut(s) 74, 305, 754
PflMI CCANNNNNTGG 2 cut(s) 602, 815
PleI GAGTC 3 cut(s) 148, 435, 873
PpsI GAGTC 3 cut(s) 148, 435, 873
PspN4I GGNNCC 1 cut(s) 96
PsuI RGATCY 1 cut(s) 498
RsaI GTAC 2 cut(s) 183, 576
RsaNI GTAC 2 cut(s) 182, 575
RseI CAYNNNNRTG 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 456
SaqAI TTAA 4 cut(s) 132, 552, 599, 789
Sau3AI GATC 2 cut(s) 498, 567
SchI GAGTC 3 cut(s) 149, 436, 874
SduI GDGCHC 2 cut(s) 542, 652
SfaNI GCATC 4 cut(s) 136, 331, 379, 720
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 3 cut(s) 26, 131, 728
SmoI CTYRAG 3 cut(s) 26, 131, 728
Sse9I AATT 6 cut(s) 208, 347, 456, 715, 768, 813
SsiI CCGC 2 cut(s) 344, 392
SspI AATATT 1 cut(s) 260
SspMI CTAG 3 cut(s) 33, 330, 759
StyI CCWWGG 3 cut(s) 414, 467, 492
TaiI ACGT 1 cut(s) 860
TaqI TCGA 2 cut(s) 123, 405
TasI AATT 6 cut(s) 208, 347, 456, 715, 768, 813
TatI WGTACW 2 cut(s) 181, 574
TfiI GAWTC 3 cut(s) 74, 305, 754
Tru1I TTAA 4 cut(s) 132, 552, 599, 789
Tru9I TTAA 4 cut(s) 132, 552, 599, 789
TspDTI ATGAA 2 cut(s) 87, 367
Van91I CCANNNNNTGG 2 cut(s) 602, 815
Vha464I CTTAAG 1 cut(s) 131
XapI RAATTY 2 cut(s) 208, 347
XspI CTAG 3 cut(s) 33, 330, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.