Rmu_sc0003264.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003264.1
OG0000195
Physical Location & Seq
Forward (+)
122056 .. 123175
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003264.1_g000025.1.cds

Sequence Viewer

Length: 1011 bp
atgtcgctactaggatattcacaagaaaccacggttcccgaagcagatcctcatgagcaagcatatgagtctaggaagccttcccttgaagaaatactagctcaattgcaagcctctcaagctctattgcaagcctcccaagctcgattgcaagcttctcaagagatatcctcattatacattccaatgagcaacttgaggcgagtcttgcacaagagccacccttcccaatttttcatgagcatgaatctttctttgaccaagtggagcctatttcaagagaaaatgggcgagagagactacacttcggaggaatgggtgcaatattggaaatctaagcttcctaatggaggggagatatttgaagatgattccgacgaggaggatgtcttttctagtgaggaggatgcgaagttcaaagtcatacaccataatcctttgttcattgaggaggatgcggagcttgaagtcatacaccataatcccttattcattgaggccgatattcccatggaggaagagagtccttcactagcttgtgatgatgaagaaattgaagagccaaggactttctctcctcccacatccatagagatccatcatgagcttcccaaggtggagagtagaacattgagcacttatgttcttaatgagagaattgggatcaaggtacttttacctctcaatccaccattaagtggtcaatgtttctacaatgaggtgatgaattggaaaggaaatggagcacttgcactcaccctttcccatcactctcaagagcttctaccacctattgttcctatgagcatcatttctacgccacttgagaaggagaaggcaaggatagctcctagaagaaaaattgagaagaaggggaagattaagaagcttcattttcgggaaccaattggaacattcatggatagctcttggtcttgtctctatgatacatcaaagagtcccttagccccaaacaatagggtggtcgtacttgagaagtatccaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

38.45

Weight (kDa)

5.1

Isoelectric Point (pI)

69.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 698
AciI CCGC 1 cut(s) 458
AclWI GGATC 3 cut(s) 41, 589, 671
AfaI GTAC 2 cut(s) 672, 990
AfiI CCNNNNNNNGG 2 cut(s) 350, 698
AgsI TTSAA 6 cut(s) 89, 278, 365, 418, 467, 557
AloI GAACNNNNNNTCC 2 cut(s) 398, 430
Alw21I GWGCWC 2 cut(s) 638, 748
Alw26I GTCTC 2 cut(s) 291, 944
AlwI GGATC 3 cut(s) 41, 589, 671
AoxI GGCC 1 cut(s) 498
AsuHPI GGTGA 2 cut(s) 733, 748
Bbv12I GWGCWC 2 cut(s) 638, 748
BccI CCATC 2 cut(s) 606, 774
BciVI GTATCC 1 cut(s) 1011
BcoDI GTCTC 2 cut(s) 291, 944
BfaI CTAG 6 cut(s) 11, 72, 98, 396, 533, 852
BfuI GTATCC 1 cut(s) 1011
BmiI GGNNCC 3 cut(s) 36, 269, 903
BmsI GCATC 3 cut(s) 397, 445, 816
BplI GAGNNNNNCTC 2 cut(s) 155, 187
Bpu10I CCTNAGC 1 cut(s) 964
BpuEI CTTGAG 5 cut(s) 102, 144, 217, 759, 845
BsaJI CCNNGG 4 cut(s) 30, 510, 563, 612
BsaXI ACNNNNNCTCC 2 cut(s) 559, 589
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 698
BseDI CCNNGG 4 cut(s) 30, 510, 563, 612
BseGI GGATG 4 cut(s) 391, 412, 460, 584
BseLI CCNNNNNNNGG 2 cut(s) 350, 698
BseRI GAGGAG 4 cut(s) 395, 416, 464, 567
BshFI GGCC 1 cut(s) 500
BsiHKAI GWGCWC 2 cut(s) 638, 748
BslFI GGGAC 1 cut(s) 945
BslI CCNNNNNNNGG 2 cut(s) 350, 698
BsmAI GTCTC 2 cut(s) 291, 944
BsmFI GGGAC 1 cut(s) 945
BsnI GGCC 1 cut(s) 500
Bsp1286I GDGCHC 2 cut(s) 638, 748
Bsp143I GATC 3 cut(s) 46, 594, 663
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 1 cut(s) 458
BspANI GGCC 1 cut(s) 500
BspHI TCATGA 3 cut(s) 52, 237, 601
BspLI GGNNCC 3 cut(s) 36, 269, 903
BspPI GGATC 3 cut(s) 41, 589, 671
BspQI GCTCTTC 1 cut(s) 552
BssECI CCNNGG 4 cut(s) 30, 510, 563, 612
BssMI GATC 3 cut(s) 46, 594, 663
BssT1I CCWWGG 3 cut(s) 510, 563, 612
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 2 cut(s) 513, 552
BstC8I GCNNGC 4 cut(s) 60, 111, 132, 153
BstDEI CTNAG 2 cut(s) 336, 964
BstDSI CCRYGG 2 cut(s) 30, 510
BstENI CCTNNNNNAGG 1 cut(s) 348
BstF5I GGATG 4 cut(s) 391, 412, 460, 584
BstKTI GATC 3 cut(s) 49, 597, 666
BstMAI GTCTC 2 cut(s) 291, 944
BstMBI GATC 3 cut(s) 46, 594, 663
BstMWI GCNNNNNNNGC 4 cut(s) 119, 140, 208, 845
BstX2I RGATCY 2 cut(s) 46, 594
BstYI RGATCY 2 cut(s) 46, 594
BsuI GTATCC 1 cut(s) 1011
BsuRI GGCC 1 cut(s) 500
BtgI CCRYGG 2 cut(s) 30, 510
BtsCI GGATG 4 cut(s) 391, 412, 460, 584
Cac8I GCNNGC 4 cut(s) 60, 111, 132, 153
CciI TCATGA 3 cut(s) 52, 237, 601
Csp6I GTAC 2 cut(s) 671, 989
CviAII CATG 6 cut(s) 53, 238, 244, 511, 602, 919
CviQI GTAC 2 cut(s) 671, 989
DdeI CTNAG 2 cut(s) 336, 964
DpnI GATC 3 cut(s) 48, 596, 665
DpnII GATC 3 cut(s) 46, 594, 663
Eam1104I CTCTTC 2 cut(s) 513, 552
EarI CTCTTC 2 cut(s) 513, 552
Eco130I CCWWGG 3 cut(s) 510, 563, 612
Eco32I GATATC 1 cut(s) 168
EcoNI CCTNNNNNAGG 1 cut(s) 348
EcoRV GATATC 1 cut(s) 168
EcoT14I CCWWGG 3 cut(s) 510, 563, 612
ErhI CCWWGG 3 cut(s) 510, 563, 612
FaeI CATG 6 cut(s) 56, 241, 247, 514, 605, 922
FalI AAGNNNNNCTT 2 cut(s) 947, 979
FaqI GGGAC 1 cut(s) 945
FatI CATG 6 cut(s) 52, 237, 243, 510, 601, 918
FauNDI CATATG 1 cut(s) 64
FokI GGATG 4 cut(s) 398, 419, 467, 571
FspBI CTAG 6 cut(s) 11, 72, 98, 396, 533, 852
HaeIII GGCC 1 cut(s) 500
Hin1II CATG 6 cut(s) 56, 241, 247, 514, 605, 922
HindIII AAGCTT 3 cut(s) 153, 338, 887
HinfI GANTC 6 cut(s) 68, 204, 247, 371, 523, 958
HphI GGTGA 2 cut(s) 733, 748
Hpy188I TCNGA 2 cut(s) 310, 376
Hpy188III TCNNGA 8 cut(s) 38, 53, 161, 238, 278, 602, 776, 899
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 6 cut(s) 90, 234, 537, 823, 829, 865
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 6 cut(s) 109, 130, 151, 211, 322, 752
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 140, 208, 845
HpyF3I CTNAG 2 cut(s) 336, 964
Hsp92II CATG 6 cut(s) 56, 241, 247, 514, 605, 922
Kzo9I GATC 3 cut(s) 46, 594, 663
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 4 cut(s) 267, 460, 743, 853
LweI GCATC 3 cut(s) 397, 445, 816
MaeI CTAG 6 cut(s) 11, 72, 98, 396, 533, 852
MalI GATC 3 cut(s) 48, 596, 665
MboI GATC 3 cut(s) 46, 594, 663
MboII GAAGA 8 cut(s) 101, 377, 530, 560, 569, 867, 880, 889
MfeI CAATTG 2 cut(s) 104, 906
MflI RGATCY 2 cut(s) 46, 594
MhlI GDGCHC 2 cut(s) 638, 748
MluCI AATT 7 cut(s) 104, 230, 552, 657, 727, 861, 906
MlyI GAGTC 4 cut(s) 77, 213, 532, 967
MmeI TCCRAC 1 cut(s) 399
MseI TTAA 3 cut(s) 648, 695, 882
MslI CAYNNNNRTG 2 cut(s) 185, 242
MunI CAATTG 2 cut(s) 104, 906
MwoI GCNNNNNNNGC 4 cut(s) 119, 140, 208, 845
NcoI CCATGG 1 cut(s) 510
NdeI CATATG 1 cut(s) 64
NdeII GATC 3 cut(s) 46, 594, 663
NlaIII CATG 6 cut(s) 56, 241, 247, 514, 605, 922
NlaIV GGNNCC 3 cut(s) 36, 269, 903
PagI TCATGA 3 cut(s) 52, 237, 601
PciSI GCTCTTC 1 cut(s) 552
PfeI GAWTC 2 cut(s) 247, 371
PflMI CCANNNNNTGG 1 cut(s) 698
PleI GAGTC 4 cut(s) 76, 212, 531, 966
PpsI GAGTC 4 cut(s) 76, 212, 531, 966
PspN4I GGNNCC 3 cut(s) 36, 269, 903
PsuI RGATCY 2 cut(s) 46, 594
RsaI GTAC 2 cut(s) 672, 990
RsaNI GTAC 2 cut(s) 671, 989
RseI CAYNNNNRTG 2 cut(s) 185, 242
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 3 cut(s) 648, 695, 882
Sau3AI GATC 3 cut(s) 46, 594, 663
SchI GAGTC 4 cut(s) 77, 213, 532, 967
SduI GDGCHC 2 cut(s) 638, 748
SfaNI GCATC 3 cut(s) 397, 445, 816
SmiMI CAYNNNNRTG 2 cut(s) 185, 242
SmlI CTYRAG 6 cut(s) 117, 159, 196, 774, 824, 992
SmoI CTYRAG 6 cut(s) 117, 159, 196, 774, 824, 992
Sse9I AATT 7 cut(s) 104, 230, 552, 657, 727, 861, 906
SsiI CCGC 1 cut(s) 458
SspI AATATT 1 cut(s) 326
SspMI CTAG 6 cut(s) 11, 72, 98, 396, 533, 852
StyI CCWWGG 3 cut(s) 510, 563, 612
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 145
TasI AATT 7 cut(s) 104, 230, 552, 657, 727, 861, 906
TfiI GAWTC 2 cut(s) 247, 371
Tru1I TTAA 3 cut(s) 648, 695, 882
Tru9I TTAA 3 cut(s) 648, 695, 882
TspDTI ATGAA 8 cut(s) 226, 260, 433, 481, 561, 740, 881, 907
Van91I CCANNNNNTGG 1 cut(s) 698
XagI CCTNNNNNAGG 1 cut(s) 348
XspI CTAG 6 cut(s) 11, 72, 98, 396, 533, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.