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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 458, 506 |
| AfaI | GTAC | 1 cut(s) | 297 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 398 |
| AgsI | TTSAA | 6 cut(s) | 59, 219, 272, 328, 413, 515 |
| AhlI | ACTAGT | 1 cut(s) | 146 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 294, 326 |
| AluBI | AGCT | 7 cut(s) | 71, 92, 104, 310, 388, 463, 511 |
| AluI | AGCT | 7 cut(s) | 71, 92, 104, 310, 388, 463, 511 |
| Alw26I | GTCTC | 3 cut(s) | 137, 339, 396 |
| AsuHPI | GGTGA | 1 cut(s) | 352 |
| AsuNHI | GCTAGC | 1 cut(s) | 67 |
| AxyI | CCTNAGG | 1 cut(s) | 558 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 485, 519 |
| BcoDI | GTCTC | 3 cut(s) | 137, 339, 396 |
| BcuI | ACTAGT | 1 cut(s) | 146 |
| BfaI | CTAG | 4 cut(s) | 42, 68, 147, 444 |
| BmiI | GGNNCC | 1 cut(s) | 210 |
| BmsI | GCATC | 2 cut(s) | 445, 493 |
| BmtI | GCTAGC | 1 cut(s) | 71 |
| BpuEI | CTTGAG | 3 cut(s) | 93, 161, 266 |
| Bsa29I | ATCGAT | 1 cut(s) | 237 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 398 |
| Bse21I | CCTNAGG | 1 cut(s) | 558 |
| BseCI | ATCGAT | 1 cut(s) | 237 |
| BseGI | GGATG | 3 cut(s) | 439, 460, 508 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 398 |
| BseRI | GAGGAG | 3 cut(s) | 414, 464, 512 |
| BshVI | ATCGAT | 1 cut(s) | 237 |
| BslFI | GGGAC | 1 cut(s) | 70 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 398 |
| BsmAI | GTCTC | 3 cut(s) | 137, 339, 396 |
| BsmFI | GGGAC | 1 cut(s) | 70 |
| Bsp1407I | TGTACA | 1 cut(s) | 295 |
| Bsp143I | GATC | 1 cut(s) | 238 |
| BspACI | CCGC | 2 cut(s) | 458, 506 |
| BspDI | ATCGAT | 1 cut(s) | 237 |
| BspHI | TCATGA | 1 cut(s) | 22 |
| BspLI | GGNNCC | 1 cut(s) | 210 |
| BspOI | GCTAGC | 1 cut(s) | 71 |
| BsrGI | TGTACA | 1 cut(s) | 295 |
| BssMI | GATC | 1 cut(s) | 238 |
| Bst6I | CTCTTC | 1 cut(s) | 561 |
| BstAUI | TGTACA | 1 cut(s) | 295 |
| BstC8I | GCNNGC | 5 cut(s) | 30, 69, 81, 102, 465 |
| BstDEI | CTNAG | 2 cut(s) | 384, 558 |
| BstF5I | GGATG | 3 cut(s) | 439, 460, 508 |
| BstKTI | GATC | 1 cut(s) | 241 |
| BstMAI | GTCTC | 3 cut(s) | 137, 339, 396 |
| BstMBI | GATC | 1 cut(s) | 238 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 89, 464 |
| Bsu15I | ATCGAT | 1 cut(s) | 237 |
| Bsu36I | CCTNAGG | 1 cut(s) | 558 |
| BsuTUI | ATCGAT | 1 cut(s) | 237 |
| BtsCI | GGATG | 3 cut(s) | 439, 460, 508 |
| Cac8I | GCNNGC | 5 cut(s) | 30, 69, 81, 102, 465 |
| CciI | TCATGA | 1 cut(s) | 22 |
| ClaI | ATCGAT | 1 cut(s) | 237 |
| CseI | GACGC | 1 cut(s) | 72 |
| Csp6I | GTAC | 1 cut(s) | 296 |
| CviAII | CATG | 2 cut(s) | 23, 185 |
| CviQI | GTAC | 1 cut(s) | 296 |
| DdeI | CTNAG | 2 cut(s) | 384, 558 |
| DpnI | GATC | 1 cut(s) | 240 |
| DpnII | GATC | 1 cut(s) | 238 |
| Eam1104I | CTCTTC | 1 cut(s) | 561 |
| EarI | CTCTTC | 1 cut(s) | 561 |
| Eco32I | GATATC | 1 cut(s) | 17 |
| Eco81I | CCTNAGG | 1 cut(s) | 558 |
| EcoRV | GATATC | 1 cut(s) | 17 |
| FaeI | CATG | 2 cut(s) | 26, 188 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 102, 134, 422, 454 |
| FaqI | GGGAC | 1 cut(s) | 70 |
| FatI | CATG | 2 cut(s) | 22, 184 |
| FokI | GGATG | 3 cut(s) | 446, 467, 515 |
| FspBI | CTAG | 4 cut(s) | 42, 68, 147, 444 |
| HgaI | GACGC | 1 cut(s) | 72 |
| Hin1II | CATG | 2 cut(s) | 26, 188 |
| HindIII | AAGCTT | 2 cut(s) | 102, 386 |
| HinfI | GANTC | 5 cut(s) | 38, 188, 254, 419, 571 |
| HphI | GGTGA | 1 cut(s) | 352 |
| Hpy188I | TCNGA | 2 cut(s) | 10, 358 |
| Hpy188III | TCNNGA | 5 cut(s) | 23, 56, 110, 219, 245 |
| HpyAV | CCTTC | 3 cut(s) | 5, 60, 178 |
| HpyCH4V | TGCA | 7 cut(s) | 79, 100, 155, 265, 332, 370, 467 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 89, 464 |
| HpyF3I | CTNAG | 2 cut(s) | 384, 558 |
| Hsp92II | CATG | 2 cut(s) | 26, 188 |
| Kzo9I | GATC | 1 cut(s) | 238 |
| LmnI | GCTCC | 3 cut(s) | 208, 460, 508 |
| LweI | GCATC | 2 cut(s) | 445, 493 |
| MaeI | CTAG | 4 cut(s) | 42, 68, 147, 444 |
| MalI | GATC | 1 cut(s) | 240 |
| MboI | GATC | 1 cut(s) | 238 |
| MboII | GAAGA | 4 cut(s) | 71, 236, 425, 578 |
| MfeI | CAATTG | 1 cut(s) | 74 |
| MluCI | AATT | 4 cut(s) | 62, 74, 174, 303 |
| MlyI | GAGTC | 1 cut(s) | 47 |
| MslI | CAYNNNNRTG | 1 cut(s) | 129 |
| MunI | CAATTG | 1 cut(s) | 74 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 89, 464 |
| NdeII | GATC | 1 cut(s) | 238 |
| NheI | GCTAGC | 1 cut(s) | 67 |
| NlaIII | CATG | 2 cut(s) | 26, 188 |
| NlaIV | GGNNCC | 1 cut(s) | 210 |
| PagI | TCATGA | 1 cut(s) | 22 |
| PfeI | GAWTC | 3 cut(s) | 188, 254, 419 |
| PleI | GAGTC | 1 cut(s) | 46 |
| PpsI | GAGTC | 1 cut(s) | 46 |
| PspN4I | GGNNCC | 1 cut(s) | 210 |
| RsaI | GTAC | 1 cut(s) | 297 |
| RsaNI | GTAC | 1 cut(s) | 296 |
| RseI | CAYNNNNRTG | 1 cut(s) | 129 |
| Sau3AI | GATC | 1 cut(s) | 238 |
| SchI | GAGTC | 1 cut(s) | 47 |
| SetI | ASST | 9 cut(s) | 73, 94, 106, 312, 342, 390, 465, 513, 549 |
| SfaNI | GCATC | 2 cut(s) | 445, 493 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 129 |
| SmlI | CTYRAG | 3 cut(s) | 108, 140, 245 |
| SmoI | CTYRAG | 3 cut(s) | 108, 140, 245 |
| SpeI | ACTAGT | 1 cut(s) | 146 |
| Sse9I | AATT | 4 cut(s) | 62, 74, 174, 303 |
| SsiI | CCGC | 2 cut(s) | 458, 506 |
| SspI | AATATT | 1 cut(s) | 374 |
| SspMI | CTAG | 4 cut(s) | 42, 68, 147, 444 |
| TaqI | TCGA | 3 cut(s) | 94, 237, 495 |
| TasI | AATT | 4 cut(s) | 62, 74, 174, 303 |
| TatI | WGTACW | 1 cut(s) | 295 |
| TfiI | GAWTC | 3 cut(s) | 188, 254, 419 |
| TspDTI | ATGAA | 4 cut(s) | 201, 333, 481, 529 |
| XspI | CTAG | 4 cut(s) | 42, 68, 147, 444 |