Rroxscaffold_5G00346580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000195
Physical Location & Seq
Forward (+)
17508066 .. 17509339
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00346580.1

Sequence Viewer

Length: 1182 bp
ATGAAAATTGCGGTTATTACAGGTGAAGGCTATCAAGAGTGGAATCCCTATGCCGAGAGTCCTATGCCTTGTTACAACCAACCTTGTGTTTTTTGTAATTCTCCGTGGCACTCACCTTTTGAATGCTCTTTGAGATTTGAGTACCCGGATTTTATGCGAGAGTATGAGTACAAGATGGGCATGTATCAAGAGACATTTGTACCCGAGGCATATCCACAAGAGCAAGCTTTTGAGTCTAGGAAGCCATCACTTGAAGAACAACTTGCTCAATTGGAAGCCTCCAATGCTCAATTGCAAGCCTCCCAAGCTCAATGTCTAGCCTCTCAAGCCCGATTGCATGCTAAATTGGAAGCCTTCAATGCTCAATTGCAAGCTTCTCAAGAAATGATTTCACATTCCAATGAGCAACTTGAGCCTAGTCTTGCACAAGAGCCACCATTCACCATTTGTCATGAGCAAGAATATTTCTTTGACCAAGTGGAGCCTTCTTTAAGAGGAGTGCATTATGAGCATCATGAGAAAGAATTGCCTATTCAAGATCGAGAGGGTGGTGTTCATGTACAAGAAAGTGAGCTTGGATATGAAAGTTCCAATGTAAAAGAGGATAGCTTGTCTAGTGAGGAGGATGCGGAGCTTGAAGAGCTACACCATGATCCCTTAATCCTTGAGGCCGATATTCCCAAGGAGGAAGAGAGTCCTTTAATGCATTGTAATGATAAAGAAGTTGAAGAGACAAAGGTTTTCTCTCCTCCCACATCCACGGAGATCCATCATGTGCTTCCCAAGGTAGAGAGTAAAACATTGAGCATTTATGTTCTTAATGAGAATATTGAGATTAAGGTACTTTTACCTCTCAATCCACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAGTGGAGCACTTGCACTCACTATTTCCCATCACTCTCAAGAGTTTCTACCACCTATTGTTCCTAAGAGCATTATTTCTACATCACTTGAGAAAGACAATGCAAGGTTGGCTTCTAGAACAAAAATAGAGAAGAGGAGGAAGATTAAGAAGTTACACTTTTGGTCACCCATTGGAATCTTCATGGATAGCTCTTGGTCTTGCCTCTTTGACATTTCAAGGAGTCCCTTAGCTCCTAACAATAGGGTGGTCGCACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

45.05

Weight (kDa)

4.89

Isoelectric Point (pI)

67.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 869
AciI CCGC 2 cut(s) 11, 629
AclWI GGATC 2 cut(s) 647, 760
AfaI GTAC 5 cut(s) 143, 170, 201, 561, 843
AfiI CCNNNNNNNGG 1 cut(s) 869
AgsI TTSAA 7 cut(s) 122, 254, 358, 536, 638, 728, 1125
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AluBI AGCT 9 cut(s) 227, 308, 374, 574, 609, 634, 643, 1098, 1139
AluI AGCT 9 cut(s) 227, 308, 374, 574, 609, 634, 643, 1098, 1139
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 2 cut(s) 185, 725
AlwI GGATC 2 cut(s) 647, 760
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 1 cut(s) 669
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 5 cut(s) 35, 105, 433, 904, 1065
AvaI CYCGRG 1 cut(s) 203
BaeI ACNNNNGTAYC 2 cut(s) 183, 216
Bbv12I GWGCWC 1 cut(s) 919
BccI CCATC 5 cut(s) 169, 253, 777, 889, 945
BciVI GTATCC 1 cut(s) 1182
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 185, 725
BfaI CTAG 5 cut(s) 237, 317, 417, 615, 1023
BfuI GTATCC 1 cut(s) 1182
Bme1390I CCNGG 1 cut(s) 146
BmeT110I CYCGRG 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 520, 616
Bpu10I CCTNAGC 1 cut(s) 1135
BpuEI CTTGAG 6 cut(s) 309, 363, 431, 686, 930, 1016
BpuMI CCSGG 1 cut(s) 146
BsaJI CCNNGG 5 cut(s) 104, 204, 681, 759, 783
Bsc4I CCNNNNNNNGG 1 cut(s) 869
BseDI CCNNGG 5 cut(s) 104, 204, 681, 759, 783
BseGI GGATG 2 cut(s) 631, 755
BseLI CCNNNNNNNGG 1 cut(s) 869
BseRI GAGGAG 4 cut(s) 510, 635, 738, 1057
BshFI GGCC 1 cut(s) 671
BsiHKAI GWGCWC 1 cut(s) 919
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 1116
BslI CCNNNNNNNGG 1 cut(s) 869
BsmAI GTCTC 2 cut(s) 185, 725
BsmFI GGGAC 1 cut(s) 1116
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 1 cut(s) 671
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 919
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 3 cut(s) 538, 652, 765
BspACI CCGC 2 cut(s) 11, 629
BspANI GGCC 1 cut(s) 671
BspHI TCATGA 2 cut(s) 451, 514
BspLI GGNNCC 1 cut(s) 483
BspPI GGATC 2 cut(s) 647, 760
BspQI GCTCTTC 1 cut(s) 633
BsrGI TGTACA 1 cut(s) 559
BssECI CCNNGG 5 cut(s) 104, 204, 681, 759, 783
BssMI GATC 3 cut(s) 538, 652, 765
BssT1I CCWWGG 2 cut(s) 681, 783
Bst6I CTCTTC 4 cut(s) 633, 684, 723, 1034
BstAUI TGTACA 1 cut(s) 559
BstC8I GCNNGC 4 cut(s) 225, 297, 339, 372
BstDEI CTNAG 2 cut(s) 972, 1135
BstDSI CCRYGG 2 cut(s) 104, 759
BstEII GGTNACC 1 cut(s) 1071
BstF5I GGATG 2 cut(s) 631, 755
BstKTI GATC 3 cut(s) 541, 655, 768
BstMAI GTCTC 2 cut(s) 185, 725
BstMBI GATC 3 cut(s) 538, 652, 765
BstMWI GCNNNNNNNGC 8 cut(s) 284, 305, 326, 359, 412, 508, 640, 1016
BstNSI RCATGY 2 cut(s) 184, 341
BstPI GGTNACC 1 cut(s) 1071
BstSCI CCNGG 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 765
BstYI RGATCY 1 cut(s) 765
BsuI GTATCC 1 cut(s) 1182
BsuRI GGCC 1 cut(s) 671
BtgI CCRYGG 2 cut(s) 104, 759
BtsCI GGATG 2 cut(s) 631, 755
Cac8I GCNNGC 4 cut(s) 225, 297, 339, 372
CciI TCATGA 2 cut(s) 451, 514
Csp6I GTAC 5 cut(s) 142, 169, 200, 560, 842
CviAII CATG 8 cut(s) 181, 338, 452, 515, 557, 650, 773, 1090
CviQI GTAC 5 cut(s) 142, 169, 200, 560, 842
DdeI CTNAG 2 cut(s) 972, 1135
DpnI GATC 3 cut(s) 540, 654, 767
DpnII GATC 3 cut(s) 538, 652, 765
Eam1104I CTCTTC 4 cut(s) 633, 684, 723, 1034
EarI CTCTTC 4 cut(s) 633, 684, 723, 1034
Eco130I CCWWGG 2 cut(s) 681, 783
Eco88I CYCGRG 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 1071
EcoO65I GGTNACC 1 cut(s) 1071
EcoT14I CCWWGG 2 cut(s) 681, 783
EcoT22I ATGCAT 1 cut(s) 708
ErhI CCWWGG 2 cut(s) 681, 783
FaeI CATG 8 cut(s) 184, 341, 455, 518, 560, 653, 776, 1093
FalI AAGNNNNNCTT 6 cut(s) 246, 278, 1003, 1035, 1049, 1081
FaqI GGGAC 1 cut(s) 1116
FatI CATG 8 cut(s) 180, 337, 451, 514, 556, 649, 772, 1089
FokI GGATG 2 cut(s) 638, 742
FspBI CTAG 5 cut(s) 237, 317, 417, 615, 1023
HaeIII GGCC 1 cut(s) 671
HapII CCGG 1 cut(s) 146
Hin1II CATG 8 cut(s) 184, 341, 455, 518, 560, 653, 776, 1093
HindIII AAGCTT 2 cut(s) 225, 372
HinfI GANTC 6 cut(s) 43, 58, 233, 694, 1083, 1129
HpaII CCGG 1 cut(s) 146
HphI GGTGA 5 cut(s) 35, 105, 433, 904, 1065
Hpy188III TCNNGA 9 cut(s) 35, 188, 380, 452, 515, 536, 542, 947, 1023
HpyAV CCTTC 3 cut(s) 20, 364, 495
HpyCH4V TGCA 8 cut(s) 295, 337, 370, 425, 502, 706, 923, 1010
HpyF10VI GCNNNNNNNGC 8 cut(s) 284, 305, 326, 359, 412, 508, 640, 1016
HpyF3I CTNAG 2 cut(s) 972, 1135
Hsp92II CATG 8 cut(s) 184, 341, 455, 518, 560, 653, 776, 1093
Kzo9I GATC 3 cut(s) 538, 652, 765
LguI GCTCTTC 1 cut(s) 633
LmnI GCTCC 4 cut(s) 481, 631, 914, 1144
LpnPI CCDG 2 cut(s) 6, 159
LweI GCATC 2 cut(s) 520, 616
MaeI CTAG 5 cut(s) 237, 317, 417, 615, 1023
MaeIII GTNAC 3 cut(s) 71, 1059, 1071
MalI GATC 3 cut(s) 540, 654, 767
MboI GATC 3 cut(s) 538, 652, 765
MboII GAAGA 7 cut(s) 266, 650, 701, 740, 1051, 1060, 1078
MfeI CAATTG 3 cut(s) 269, 290, 365
MflI RGATCY 1 cut(s) 765
MhlI GDGCHC 1 cut(s) 919
MluCI AATT 7 cut(s) 6, 97, 269, 290, 344, 365, 524
MlyI GAGTC 4 cut(s) 67, 242, 703, 1138
Mph1103I ATGCAT 1 cut(s) 708
MseI TTAA 7 cut(s) 491, 659, 701, 819, 837, 866, 1053
MslI CAYNNNNRTG 2 cut(s) 399, 711
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 146
MunI CAATTG 3 cut(s) 269, 290, 365
Mva1269I GAATGC 1 cut(s) 128
MwoI GCNNNNNNNGC 8 cut(s) 284, 305, 326, 359, 412, 508, 640, 1016
NciI CCSGG 1 cut(s) 146
NdeII GATC 3 cut(s) 538, 652, 765
NlaIII CATG 8 cut(s) 184, 341, 455, 518, 560, 653, 776, 1093
NlaIV GGNNCC 1 cut(s) 483
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 1071
NsiI ATGCAT 1 cut(s) 708
NspI RCATGY 2 cut(s) 184, 341
PaeI GCATGC 1 cut(s) 341
PagI TCATGA 2 cut(s) 451, 514
PciSI GCTCTTC 1 cut(s) 633
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 43, 1083
PflMI CCANNNNNTGG 1 cut(s) 869
PleI GAGTC 4 cut(s) 66, 241, 702, 1137
PpsI GAGTC 4 cut(s) 66, 241, 702, 1137
PspEI GGTNACC 1 cut(s) 1071
PspN4I GGNNCC 1 cut(s) 483
PsuI RGATCY 1 cut(s) 765
RsaI GTAC 5 cut(s) 143, 170, 201, 561, 843
RsaNI GTAC 5 cut(s) 142, 169, 200, 560, 842
RseI CAYNNNNRTG 2 cut(s) 399, 711
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 7 cut(s) 491, 659, 701, 819, 837, 866, 1053
Sau3AI GATC 3 cut(s) 538, 652, 765
SchI GAGTC 4 cut(s) 67, 242, 703, 1138
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 2 cut(s) 520, 616
SmiMI CAYNNNNRTG 2 cut(s) 399, 711
SmlI CTYRAG 7 cut(s) 324, 378, 410, 665, 945, 995, 1163
SmoI CTYRAG 7 cut(s) 324, 378, 410, 665, 945, 995, 1163
SphI GCATGC 1 cut(s) 341
Sse9I AATT 7 cut(s) 6, 97, 269, 290, 344, 365, 524
SsiI CCGC 2 cut(s) 11, 629
SspI AATATT 2 cut(s) 464, 829
SspMI CTAG 5 cut(s) 237, 317, 417, 615, 1023
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 2 cut(s) 681, 783
TaqI TCGA 1 cut(s) 541
TasI AATT 7 cut(s) 6, 97, 269, 290, 344, 365, 524
TatI WGTACW 2 cut(s) 168, 559
TfiI GAWTC 2 cut(s) 43, 1083
Tru1I TTAA 7 cut(s) 491, 659, 701, 819, 837, 866, 1053
Tru9I TTAA 7 cut(s) 491, 659, 701, 819, 837, 866, 1053
TseFI GTSAC 1 cut(s) 1071
Tsp45I GTSAC 1 cut(s) 1071
TspDTI ATGAA 4 cut(s) 17, 545, 597, 1078
TspGWI ACGGA 2 cut(s) 93, 776
Van91I CCANNNNNTGG 1 cut(s) 869
XbaI TCTAGA 1 cut(s) 1022
XceI RCATGY 2 cut(s) 184, 341
XspI CTAG 5 cut(s) 237, 317, 417, 615, 1023
Zsp2I ATGCAT 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.