Rroxscaffold_1G00001910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000195
Physical Location & Seq
Reverse (-)
2264381 .. 2265517
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00001910.1

Sequence Viewer

Length: 1137 bp
ATGGGATATGTGCAACCTCCTCAAGATCAAGCTTATGAACCTACAAACTCATCCATTGAAGAATTGTTTGCTCAATTCAAAGCTATAAGTGAGAGTGTAGATCCAATCATGGAGCAATTCAAGGCTAGCCTACTTCAAGAGCAACCTCCCACCACTTTATATTTGCAAGATCCTTTCTTTGATCAAGTACCGGGGCCTATTTCAAGAGAAGAAGTACATATCAAGCATCTTGAGCAAGAGTCGCATATACAAATTGATGATTATAGTGATGTTGATGTACAAGAAAGTAAGCTTGGTTATGAAAGTTCTAATGCAAGTGGGGTGAAAGACTACACTTCGAAGGAATGGGTGCAATATTGGAAATCTAAACTTCCAAATACAGGGGAGATATTTGAAGATGATTCCGAAGAGGATGTCTTTTCTAGTGAGGAGGATTCAAAGTTTGAAGTGATGCACCACAATCCCTTATTCATTGAGGCCGTACTTGAACATGATTCTGATGAGGGGATGACTTATCTAGTGGGGAGGATGAGGAGTTTGAAGTCATACACCATAATCCCTTGTTCATCGAGGAGAATGCGGAGTTTGAAGTTATACACCATAATCCCTTATTTTATTGAGGTCGATATTCCCATGGAGGAAGAGAGTCCTTCAATAATTTGTGATGATGAAGAAATTGAAGAGCCAAGGACTTTCTCTCCTCCCACATCCATGGAGATCCATCATGTGCTTCCCAAGGTTGAGAGTAGAACATTGAGCACCTATGTCCTTAATGAGAGGATTGGGATCAAGGTACTTTTACCTCCCAATCCACCATTAAGTGGTCAATATTTCTACAATGAGGTGATGGATTGGAAAGGAAATGAAGCACTTGCACTCACCCTTTCCCATCACTCTCAAGAGCTTCTACCACCTATTTTTCCTATGAGCATCATTTCTACACCACTTTTGAAGGAGAAGGCAAGGATATTGGCTCCTAGAAGAAAAATTGAGAAGAAAAGGAAAATTAAGAAGCTACACTTTTGCTCGCCAATTGGAATATTCATAGGTAGTTCTTGGTCTTGCCTCTATGATACATCAAGGAGTCCCTTTGCCCCAAACAATAGGGTGGTCGTACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

43.52

Weight (kDa)

4.95

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 821
AciI CCGC 1 cut(s) 580
AclWI GGATC 4 cut(s) 95, 164, 712, 794
AfaI GTAC 6 cut(s) 189, 216, 279, 483, 795, 1116
AfiI CCNNNNNNNGG 2 cut(s) 380, 821
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AluBI AGCT 5 cut(s) 32, 83, 292, 904, 1015
AluI AGCT 5 cut(s) 32, 83, 292, 904, 1015
Alw21I GWGCWC 1 cut(s) 761
AlwI GGATC 4 cut(s) 95, 164, 712, 794
AoxI GGCC 2 cut(s) 194, 477
ArsI GACNNNNNNTTYG 2 cut(s) 399, 431
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 3 cut(s) 334, 856, 871
AsuII TTCGAA 1 cut(s) 338
AsuNHI GCTAGC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 761
BccI CCATC 3 cut(s) 729, 841, 897
BceAI ACGGC 1 cut(s) 464
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciVI GTATCC 1 cut(s) 1137
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 1 cut(s) 192
BfaI CTAG 4 cut(s) 126, 423, 518, 978
BfuI GTATCC 1 cut(s) 1137
Bme1390I CCNGG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 195, 975
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 3 cut(s) 235, 441, 939
BmtI GCTAGC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 338
BpuEI CTTGAG 3 cut(s) 6, 251, 882
BpuMI CCSGG 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 785
BsaJI CCNNGG 5 cut(s) 191, 633, 686, 711, 735
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 2 cut(s) 380, 821
Bse8I GATNNNNATC 1 cut(s) 785
BseDI CCNNGG 5 cut(s) 191, 633, 686, 711, 735
BseGI GGATG 5 cut(s) 50, 418, 513, 534, 707
BseJI GATNNNNATC 1 cut(s) 785
BseLI CCNNNNNNNGG 2 cut(s) 380, 821
BseRI GAGGAG 5 cut(s) 9, 443, 547, 586, 690
BshFI GGCC 2 cut(s) 196, 479
BsiHKAI GWGCWC 1 cut(s) 761
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 1071
BslI CCNNNNNNNGG 2 cut(s) 380, 821
BsmFI GGGAC 1 cut(s) 1071
BsmI GAATGC 1 cut(s) 582
BsnI GGCC 2 cut(s) 196, 479
Bsp119I TTCGAA 1 cut(s) 338
Bsp1286I GDGCHC 1 cut(s) 761
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 6 cut(s) 25, 100, 169, 181, 717, 786
Bsp19I CCATGG 2 cut(s) 633, 711
BspACI CCGC 1 cut(s) 580
BspANI GGCC 2 cut(s) 196, 479
BspLI GGNNCC 2 cut(s) 195, 975
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 4 cut(s) 95, 164, 712, 794
BspQI GCTCTTC 1 cut(s) 675
BspT104I TTCGAA 1 cut(s) 338
BsrGI TGTACA 1 cut(s) 277
BssECI CCNNGG 5 cut(s) 191, 633, 686, 711, 735
BssMI GATC 6 cut(s) 25, 100, 169, 181, 717, 786
BssT1I CCWWGG 4 cut(s) 633, 686, 711, 735
Bst6I CTCTTC 3 cut(s) 402, 636, 675
BstAUI TGTACA 1 cut(s) 277
BstBI TTCGAA 1 cut(s) 338
BstC8I GCNNGC 2 cut(s) 127, 1028
BstDSI CCRYGG 2 cut(s) 633, 711
BstF5I GGATG 5 cut(s) 50, 418, 513, 534, 707
BstKTI GATC 6 cut(s) 28, 103, 172, 184, 720, 789
BstMBI GATC 6 cut(s) 25, 100, 169, 181, 717, 786
BstMWI GCNNNNNNNGC 2 cut(s) 232, 241
BstSCI CCNGG 1 cut(s) 190
BstX2I RGATCY 3 cut(s) 100, 169, 717
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 3 cut(s) 100, 169, 717
BsuI GTATCC 1 cut(s) 1137
BsuRI GGCC 2 cut(s) 196, 479
BtgI CCRYGG 2 cut(s) 633, 711
BtsCI GGATG 5 cut(s) 50, 418, 513, 534, 707
Cac8I GCNNGC 2 cut(s) 127, 1028
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 6 cut(s) 188, 215, 278, 482, 794, 1115
CviAII CATG 5 cut(s) 109, 491, 634, 712, 725
CviQI GTAC 6 cut(s) 188, 215, 278, 482, 794, 1115
DpnI GATC 6 cut(s) 27, 102, 171, 183, 719, 788
DpnII GATC 6 cut(s) 25, 100, 169, 181, 717, 786
Eam1104I CTCTTC 3 cut(s) 402, 636, 675
EarI CTCTTC 3 cut(s) 402, 636, 675
Eco130I CCWWGG 4 cut(s) 633, 686, 711, 735
EcoO109I RGGNCCY 1 cut(s) 194
EcoT14I CCWWGG 4 cut(s) 633, 686, 711, 735
ErhI CCWWGG 4 cut(s) 633, 686, 711, 735
FaeI CATG 5 cut(s) 112, 494, 637, 715, 728
FalI AAGNNNNNCTT 2 cut(s) 1004, 1036
FaqI GGGAC 1 cut(s) 1071
FatI CATG 5 cut(s) 108, 490, 633, 711, 724
FbaI TGATCA 1 cut(s) 181
FokI GGATG 5 cut(s) 37, 425, 520, 541, 694
FspBI CTAG 4 cut(s) 126, 423, 518, 978
HaeIII GGCC 2 cut(s) 196, 479
HapII CCGG 1 cut(s) 191
Hin1II CATG 5 cut(s) 112, 494, 637, 715, 728
HindIII AAGCTT 2 cut(s) 30, 290
HinfI GANTC 6 cut(s) 239, 401, 434, 494, 646, 1084
HpaII CCGG 1 cut(s) 191
HphI GGTGA 3 cut(s) 334, 856, 871
Hpy188I TCNGA 2 cut(s) 406, 499
Hpy188III TCNNGA 5 cut(s) 23, 137, 204, 230, 899
HpyAV CCTTC 4 cut(s) 334, 660, 946, 952
HpyCH4V TGCA 6 cut(s) 13, 166, 314, 352, 454, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 241
Hsp92II CATG 5 cut(s) 112, 494, 637, 715, 728
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 6 cut(s) 25, 100, 169, 181, 717, 786
LguI GCTCTTC 1 cut(s) 675
LmnI GCTCC 2 cut(s) 112, 979
LpnPI CCDG 2 cut(s) 204, 366
LweI GCATC 3 cut(s) 235, 441, 939
MaeI CTAG 4 cut(s) 126, 423, 518, 978
MalI GATC 6 cut(s) 27, 102, 171, 183, 719, 788
MboI GATC 6 cut(s) 25, 100, 169, 181, 717, 786
MboII GAAGA 9 cut(s) 71, 221, 407, 419, 653, 683, 692, 993, 1006
MfeI CAATTG 1 cut(s) 1032
MflI RGATCY 3 cut(s) 100, 169, 717
MhlI GDGCHC 1 cut(s) 761
MluCI AATT 9 cut(s) 62, 74, 116, 252, 657, 675, 987, 1005, 1032
MlyI GAGTC 3 cut(s) 248, 655, 1093
MseI TTAA 3 cut(s) 771, 818, 1008
MslI CAYNNNNRTG 1 cut(s) 710
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 192
MunI CAATTG 1 cut(s) 1032
Mva1269I GAATGC 1 cut(s) 582
MwoI GCNNNNNNNGC 2 cut(s) 232, 241
NciI CCSGG 1 cut(s) 192
NcoI CCATGG 2 cut(s) 633, 711
NdeII GATC 6 cut(s) 25, 100, 169, 181, 717, 786
NheI GCTAGC 1 cut(s) 125
NlaIII CATG 5 cut(s) 112, 494, 637, 715, 728
NlaIV GGNNCC 2 cut(s) 195, 975
NspV TTCGAA 1 cut(s) 338
PciSI GCTCTTC 1 cut(s) 675
PctI GAATGC 1 cut(s) 582
PfeI GAWTC 3 cut(s) 401, 434, 494
PflMI CCANNNNNTGG 1 cut(s) 821
PleI GAGTC 3 cut(s) 247, 654, 1092
PpsI GAGTC 3 cut(s) 247, 654, 1092
PspN4I GGNNCC 2 cut(s) 195, 975
PspPI GGNCC 1 cut(s) 194
PsuI RGATCY 3 cut(s) 100, 169, 717
RsaI GTAC 6 cut(s) 189, 216, 279, 483, 795, 1116
RsaNI GTAC 6 cut(s) 188, 215, 278, 482, 794, 1115
RseI CAYNNNNRTG 1 cut(s) 710
SapI GCTCTTC 1 cut(s) 675
SaqAI TTAA 3 cut(s) 771, 818, 1008
Sau3AI GATC 6 cut(s) 25, 100, 169, 181, 717, 786
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 3 cut(s) 248, 655, 1093
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 761
SfaNI GCATC 3 cut(s) 235, 441, 939
SfuI TTCGAA 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 4 cut(s) 21, 230, 897, 1118
SmoI CTYRAG 4 cut(s) 21, 230, 897, 1118
Sse9I AATT 9 cut(s) 62, 74, 116, 252, 657, 675, 987, 1005, 1032
SsiI CCGC 1 cut(s) 580
SspI AATATT 3 cut(s) 356, 830, 1041
SspMI CTAG 4 cut(s) 126, 423, 518, 978
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 4 cut(s) 633, 686, 711, 735
TaqI TCGA 3 cut(s) 338, 569, 624
TasI AATT 9 cut(s) 62, 74, 116, 252, 657, 675, 987, 1005, 1032
TatI WGTACW 2 cut(s) 214, 277
TfiI GAWTC 3 cut(s) 401, 434, 494
Tru1I TTAA 3 cut(s) 771, 818, 1008
Tru9I TTAA 3 cut(s) 771, 818, 1008
TspDTI ATGAA 7 cut(s) 51, 315, 460, 555, 684, 879, 1033
Van91I CCANNNNNTGG 1 cut(s) 821
XspI CTAG 4 cut(s) 126, 423, 518, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.