Rmu_sc0003044.1_g000038

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003044.1
OG0000195
Physical Location & Seq
Reverse (-)
146174 .. 146944
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003044.1_g000038.1.cds

Sequence Viewer

Length: 771 bp
atgcaagttgaaaatgatgatagtgatattgatgtacaagaaagtgagcttggttatgaaagttccaatgcaattgaggtgagaaactacacttctgaggaatgggtgcaatattggaaatttaagcttccaaatgcaggggagatatttgaagatgatttcaaaaaggaagatggtttgtctagtgatgaggatgtggagttcgaagtcatactccataatcccttgttcattgaggtggatgcggagcttcaactcatataccataatcctttattcattgaggacaatattcccatggaggaagatagtcattcaatagcttgtgatgatgaagaagttgaagagcgaaggactttctctcctcctacatccaaggagatccatcatgaacttcccaaggtggagtgtagaatattgagaacttatattcttaatgagaggattgagattaaggtatttttatctctcaatccaccattaagtggtcaatgtttctataatgaggtgatggattggaaacgaaatggagcacttgcactcaccctttcccatcactctcaagagcttctaccacttattattcctatgagcatcaattctacaccacttgagaaggagaaggcaaggattttgattcttagaagaaaaattgagaagaagaggaagattaagaagctccacttttggtcaccaattgcaatattcatggatagctcttggtcttgtctctatgacatatctgaggagtcccttagccccaaaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

30.04

Weight (kDa)

4.74

Isoelectric Point (pI)

69.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 485
AciI CCGC 1 cut(s) 245
AclWI GGATC 1 cut(s) 376
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 137, 485
AgsI TTSAA 6 cut(s) 11, 152, 163, 254, 318, 344
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 7 cut(s) 49, 127, 250, 323, 568, 679, 717
AluI AGCT 7 cut(s) 49, 127, 250, 323, 568, 679, 717
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 734
AlwI GGATC 1 cut(s) 376
ApoI RAATTY 1 cut(s) 119
AsuHPI GGTGA 4 cut(s) 91, 520, 535, 684
AsuII TTCGAA 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 535
BccI CCATC 4 cut(s) 167, 393, 505, 561
BcoDI GTCTC 1 cut(s) 734
BfaI CTAG 1 cut(s) 183
BmsI GCATC 2 cut(s) 232, 603
Bpu10I CCTNAGC 1 cut(s) 755
Bpu14I TTCGAA 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 546, 632
BsaJI CCNNGG 3 cut(s) 297, 375, 399
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 485
BseDI CCNNGG 3 cut(s) 297, 375, 399
BseGI GGATG 3 cut(s) 199, 247, 371
BseLI CCNNNNNNNGG 2 cut(s) 137, 485
BseMII CTCAG 2 cut(s) 87, 735
BseRI GAGGAG 2 cut(s) 354, 761
BsiHKAI GWGCWC 1 cut(s) 535
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 2 cut(s) 137, 485
BsmAI GTCTC 1 cut(s) 734
BsmFI GGGAC 1 cut(s) 736
Bsp119I TTCGAA 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 535
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 1 cut(s) 381
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 1 cut(s) 245
BspCNI CTCAG 2 cut(s) 88, 736
BspHI TCATGA 1 cut(s) 388
BspPI GGATC 1 cut(s) 376
BspQI GCTCTTC 1 cut(s) 339
BspT104I TTCGAA 1 cut(s) 204
BsrGI TGTACA 1 cut(s) 34
BssECI CCNNGG 3 cut(s) 297, 375, 399
BssMI GATC 1 cut(s) 381
BssT1I CCWWGG 3 cut(s) 297, 375, 399
Bst6I CTCTTC 2 cut(s) 339, 656
BstAUI TGTACA 1 cut(s) 34
BstBI TTCGAA 1 cut(s) 204
BstDEI CTNAG 4 cut(s) 96, 641, 744, 755
BstDSI CCRYGG 1 cut(s) 297
BstEII GGTNACC 1 cut(s) 690
BstF5I GGATG 3 cut(s) 199, 247, 371
BstKTI GATC 1 cut(s) 384
BstMAI GTCTC 1 cut(s) 734
BstMBI GATC 1 cut(s) 381
BstPI GGTNACC 1 cut(s) 690
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 3 cut(s) 199, 247, 371
CciI TCATGA 1 cut(s) 388
Csp6I GTAC 1 cut(s) 35
CviAII CATG 3 cut(s) 298, 389, 709
CviJI RGCY 8 cut(s) 49, 127, 250, 323, 568, 679, 717, 759
CviKI_1 RGCY 8 cut(s) 49, 127, 250, 323, 568, 679, 717, 759
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 4 cut(s) 96, 641, 744, 755
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
Eam1104I CTCTTC 2 cut(s) 339, 656
EarI CTCTTC 2 cut(s) 339, 656
Eco130I CCWWGG 3 cut(s) 297, 375, 399
Eco91I GGTNACC 1 cut(s) 690
EcoO65I GGTNACC 1 cut(s) 690
EcoT14I CCWWGG 3 cut(s) 297, 375, 399
ErhI CCWWGG 3 cut(s) 297, 375, 399
FaeI CATG 3 cut(s) 301, 392, 712
FalI AAGNNNNNCTT 2 cut(s) 668, 700
FaqI GGGAC 1 cut(s) 736
FatI CATG 3 cut(s) 297, 388, 708
FokI GGATG 3 cut(s) 206, 254, 358
FspBI CTAG 1 cut(s) 183
Hin1II CATG 3 cut(s) 301, 392, 712
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 2 cut(s) 637, 749
HphI GGTGA 4 cut(s) 91, 520, 535, 684
Hpy188I TCNGA 2 cut(s) 97, 745
Hpy188III TCNNGA 2 cut(s) 389, 563
HpyAV CCTTC 3 cut(s) 345, 610, 616
HpyCH4V TGCA 6 cut(s) 4, 71, 109, 137, 539, 701
HpyF3I CTNAG 4 cut(s) 96, 641, 744, 755
Hsp92II CATG 3 cut(s) 301, 392, 712
Kzo9I GATC 1 cut(s) 381
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 3 cut(s) 247, 530, 684
LpnPI CCDG 1 cut(s) 123
LweI GCATC 2 cut(s) 232, 603
MaeI CTAG 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 690
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 9 cut(s) 164, 182, 317, 347, 356, 657, 670, 673, 679
MfeI CAATTG 2 cut(s) 72, 696
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 535
MluCI AATT 5 cut(s) 72, 119, 598, 651, 696
MlyI GAGTC 1 cut(s) 758
MseI TTAA 5 cut(s) 123, 435, 453, 482, 672
MslI CAYNNNNRTG 1 cut(s) 236
MunI CAATTG 2 cut(s) 72, 696
NcoI CCATGG 1 cut(s) 297
NdeII GATC 1 cut(s) 381
NlaIII CATG 3 cut(s) 301, 392, 712
NmuCI GTSAC 1 cut(s) 690
NspV TTCGAA 1 cut(s) 204
PagI TCATGA 1 cut(s) 388
PciSI GCTCTTC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 637
PflMI CCANNNNNTGG 1 cut(s) 485
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
PspEI GGTNACC 1 cut(s) 690
PsuI RGATCY 1 cut(s) 381
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 5 cut(s) 123, 435, 453, 482, 672
Sau3AI GATC 1 cut(s) 381
SchI GAGTC 1 cut(s) 758
SduI GDGCHC 1 cut(s) 535
SfaNI GCATC 2 cut(s) 232, 603
SfuI TTCGAA 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 561, 611
SmoI CTYRAG 2 cut(s) 561, 611
Sse9I AATT 5 cut(s) 72, 119, 598, 651, 696
SsiI CCGC 1 cut(s) 245
SspI AATATT 4 cut(s) 113, 292, 417, 705
SspMI CTAG 1 cut(s) 183
StyI CCWWGG 3 cut(s) 297, 375, 399
TaqI TCGA 1 cut(s) 204
TasI AATT 5 cut(s) 72, 119, 598, 651, 696
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 5 cut(s) 123, 435, 453, 482, 672
Tru9I TTAA 5 cut(s) 123, 435, 453, 482, 672
TseFI GTSAC 1 cut(s) 690
Tsp45I GTSAC 1 cut(s) 690
TspDTI ATGAA 6 cut(s) 72, 220, 268, 348, 405, 697
Van91I CCANNNNNTGG 1 cut(s) 485
XapI RAATTY 1 cut(s) 119
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.