Rmu_sc0006968.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006968.1
OG0000195
Physical Location & Seq
Forward (+)
11151 .. 14982
3832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006968.1_g000002.1.cds

Sequence Viewer

Length: 855 bp
atggacccaaaaccgtactttagtaaagacaaagtggatttcgccaagccgggccatgtgcctctcctatacgcttcccgaccacatgctcaaaacctgaacactgttgtaggggtgagctttcgtcctcgcacgcccagtaagggccgacccaaccatgctagagctacagtttccggtgagctcgtgcggcgtttcccggcgtcgatcgtcagcgaagctttggggcttcaatgtttggcttcgtctgagcatgttggtgtcggaggtgtattgaaatcatggtcagaaatggaggctcggtttccaggcaacacggtggggctgtggtggtcgtcggtggaggtgaacgacgatgcttggagctggtttgaagggtggaggctgtgtcaaaaggtagtggccggagatggagttttccggctgggttctatgtcctctggcaatggaacttgtgctttgtgtaattctccgtggcattcgccttttgagtgctctttgagatttgagtgcccggattttatgcaaaagtatgagtacaagatgggcatgtatcaagagacatctgtacccaatgcatatccacaagatgaagcttatgagcctaggaaggaatttgttgaaggactactagctcaattgcaagcctcccgagatcttttacaagcttctcaagttaggatttcacaagagaccatggtgtccgaaggatatcctcatgagcaagcgtatgagtctaggaagccttctcttgaagaattgcttgctcaattgcaagcttctcaagaaatacttatacataccaatgagcaacttgagactagtcttgcacaagagccacccttcaccatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

31.81

Weight (kDa)

5.45

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 700
AciI CCGC 1 cut(s) 190
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 614
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 3 cut(s) 17, 539, 570
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 5 cut(s) 233, 277, 374, 623, 755
AhlI ACTAGT 1 cut(s) 821
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 9 cut(s) 120, 167, 184, 221, 366, 596, 635, 668, 779
AluI AGCT 9 cut(s) 120, 167, 184, 221, 366, 596, 635, 668, 779
Alw21I GWGCWC 2 cut(s) 186, 497
Alw26I GTCTC 3 cut(s) 554, 686, 812
Ama87I CYCGRG 1 cut(s) 651
AoxI GGCC 3 cut(s) 52, 145, 402
ApoI RAATTY 1 cut(s) 614
AspA2I CCTAGG 1 cut(s) 605
AspS9I GGNCC 3 cut(s) 4, 52, 145
AsuC2I CCSGG 3 cut(s) 51, 200, 515
AsuHPI GGTGA 4 cut(s) 127, 191, 358, 838
AvaI CYCGRG 1 cut(s) 651
AvaII GGWCC 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 605
BaeGI GKGCMC 1 cut(s) 515
BaeI ACNNNNGTAYC 2 cut(s) 552, 585
BanII GRGCYC 1 cut(s) 186
BauI CACGAG 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 186, 497
BccI CCATC 2 cut(s) 404, 538
BciT130I CCWGG 1 cut(s) 309
BcnI CCSGG 3 cut(s) 51, 200, 515
BcoDI GTCTC 3 cut(s) 554, 686, 812
BcuI ACTAGT 1 cut(s) 821
BfaI CTAG 5 cut(s) 162, 606, 632, 738, 822
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 655
BisI GCNGC 1 cut(s) 191
BlnI CCTAGG 1 cut(s) 605
BlsI GCNGC 1 cut(s) 192
Bme1390I CCNGG 4 cut(s) 51, 200, 309, 515
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 651
BmgT120I GGNCC 3 cut(s) 4, 52, 145
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 4 cut(s) 51, 200, 309, 515
BmrI ACTGGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 132
BpuEI CTTGAG 3 cut(s) 657, 768, 836
BpuMI CCSGG 3 cut(s) 51, 200, 515
BsaHI GRCGYC 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 686
BsaJI CCNNGG 3 cut(s) 473, 605, 696
BsaWI WCCGGW 1 cut(s) 176
BsaXI ACNNNNNCTCC 6 cut(s) 287, 317, 373, 399, 403, 429
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 451
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 473, 605, 696
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 515
BseYI CCCAGC 1 cut(s) 424
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 3 cut(s) 54, 147, 404
BsiEI CGRYCG 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 186, 497
BsiHKCI CYCGRG 1 cut(s) 651
BsiSI CCGG 6 cut(s) 50, 177, 200, 405, 421, 515
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 3 cut(s) 554, 686, 812
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 3 cut(s) 54, 147, 404
Bso31I GGTCTC 1 cut(s) 686
BsoBI CYCGRG 1 cut(s) 651
Bsp1286I GDGCHC 3 cut(s) 186, 497, 515
Bsp143I GATC 2 cut(s) 207, 655
Bsp19I CCATGG 1 cut(s) 696
BspACI CCGC 1 cut(s) 190
BspANI GGCC 3 cut(s) 54, 147, 404
BspCNI CTCAG 1 cut(s) 241
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 1 cut(s) 6
BspTNI GGTCTC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 451
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 473, 605, 696
BssMI GATC 2 cut(s) 207, 655
BssNI GRCGYC 1 cut(s) 203
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 2 cut(s) 605, 696
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 4 cut(s) 15, 106, 172, 319
BstACI GRCGYC 1 cut(s) 203
BstC8I GCNNGC 5 cut(s) 134, 645, 726, 765, 777
BstDEI CTNAG 1 cut(s) 249
BstDSI CCRYGG 2 cut(s) 473, 696
BstKTI GATC 2 cut(s) 210, 658
BstMAI GTCTC 3 cut(s) 554, 686, 812
BstMBI GATC 2 cut(s) 207, 655
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 3 cut(s) 89, 257, 553
BstSCI CCNGG 4 cut(s) 49, 198, 307, 513
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 515
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
BsuRI GGCC 3 cut(s) 54, 147, 404
BtgI CCRYGG 2 cut(s) 473, 696
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 5 cut(s) 134, 645, 726, 765, 777
CciI TCATGA 1 cut(s) 718
Cfr13I GGNCC 3 cut(s) 4, 52, 145
CseI GACGC 1 cut(s) 192
Csp6I GTAC 3 cut(s) 16, 538, 569
CviAII CATG 8 cut(s) 56, 86, 158, 254, 282, 550, 697, 719
CviQI GTAC 3 cut(s) 16, 538, 569
DdeI CTNAG 1 cut(s) 249
DpnI GATC 2 cut(s) 209, 657
DpnII GATC 2 cut(s) 207, 655
DrdI GACNNNNNNGTC 1 cut(s) 700
DseDI GACNNNNNNGTC 1 cut(s) 700
EaeI YGGCCR 1 cut(s) 402
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 2 cut(s) 605, 696
Eco24I GRGCYC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 686
Eco32I GATATC 1 cut(s) 713
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 651
EcoICRI GAGCTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 307
EcoRV GATATC 1 cut(s) 713
EcoT14I CCWWGG 2 cut(s) 605, 696
EcoT22I ATGCAT 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 2 cut(s) 605, 696
FaeI CATG 8 cut(s) 59, 89, 161, 257, 285, 553, 700, 722
FalI AAGNNNNNCTT 4 cut(s) 747, 779, 777, 809
FatI CATG 8 cut(s) 55, 85, 157, 253, 281, 549, 696, 718
Fnu4HI GCNGC 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 191
FspBI CTAG 5 cut(s) 162, 606, 632, 738, 822
GluI GCNGC 1 cut(s) 191
GsaI CCCAGC 1 cut(s) 428
HaeIII GGCC 3 cut(s) 54, 147, 404
HapII CCGG 6 cut(s) 50, 177, 200, 405, 421, 515
HgaI GACGC 1 cut(s) 192
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 8 cut(s) 59, 89, 161, 257, 285, 553, 700, 722
HindIII AAGCTT 4 cut(s) 219, 594, 666, 777
HinfI GANTC 1 cut(s) 734
HpaII CCGG 6 cut(s) 50, 177, 200, 405, 421, 515
HphI GGTGA 4 cut(s) 127, 191, 358, 838
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 4 cut(s) 250, 266, 289, 706
Hpy188III TCNNGA 6 cut(s) 78, 557, 651, 719, 752, 785
Hpy8I GTNNAC 1 cut(s) 349
Hpy99I CGWCG 3 cut(s) 208, 340, 356
HpyAV CCTTC 6 cut(s) 368, 604, 617, 701, 756, 853
HpyCH4III ACNGT 4 cut(s) 15, 106, 172, 319
HpyCH4V TGCA 5 cut(s) 526, 578, 643, 775, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 1 cut(s) 249
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 8 cut(s) 59, 89, 161, 257, 285, 553, 700, 722
Kzo9I GATC 2 cut(s) 207, 655
LmnI GCTCC 1 cut(s) 363
LweI GCATC 1 cut(s) 346
MaeI CTAG 5 cut(s) 162, 606, 632, 738, 822
MalI GATC 2 cut(s) 209, 657
MboI GATC 2 cut(s) 207, 655
MboII GAAGA 1 cut(s) 767
MfeI CAATTG 2 cut(s) 638, 770
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 3 cut(s) 186, 497, 515
MluCI AATT 5 cut(s) 466, 614, 638, 758, 770
MlyI GAGTC 1 cut(s) 743
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 9 cut(s) 72, 138, 260, 289, 337, 375, 448, 658, 726
Mph1103I ATGCAT 1 cut(s) 580
MseI TTAA 1 cut(s) 853
MslI CAYNNNNRTG 2 cut(s) 258, 804
MspI CCGG 6 cut(s) 50, 177, 200, 405, 421, 515
MspR9I CCNGG 4 cut(s) 51, 200, 309, 515
MunI CAATTG 2 cut(s) 638, 770
Mva1269I GAATGC 1 cut(s) 478
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 190
NciI CCSGG 3 cut(s) 51, 200, 515
NcoI CCATGG 1 cut(s) 696
NdeII GATC 2 cut(s) 207, 655
NlaIII CATG 8 cut(s) 59, 89, 161, 257, 285, 553, 700, 722
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 580
NspI RCATGY 3 cut(s) 89, 257, 553
PagI TCATGA 1 cut(s) 718
PctI GAATGC 1 cut(s) 478
PkrI GCNGC 1 cut(s) 192
Ple19I CGATCG 1 cut(s) 210
PleI GAGTC 1 cut(s) 742
PpsI GAGTC 1 cut(s) 742
Psp124BI GAGCTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 424
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 4, 52, 145
PsuI RGATCY 1 cut(s) 655
PvuI CGATCG 1 cut(s) 210
RsaI GTAC 3 cut(s) 17, 539, 570
RsaNI GTAC 3 cut(s) 16, 538, 569
RseI CAYNNNNRTG 2 cut(s) 258, 804
SacI GAGCTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 853
SatI GCNGC 1 cut(s) 191
Sau3AI GATC 2 cut(s) 207, 655
Sau96I GGNCC 3 cut(s) 4, 52, 145
SchI GAGTC 1 cut(s) 743
ScrFI CCNGG 4 cut(s) 51, 200, 309, 515
SduI GDGCHC 3 cut(s) 186, 497, 515
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 258, 804
SmlI CTYRAG 3 cut(s) 672, 783, 815
SmoI CTYRAG 3 cut(s) 672, 783, 815
SpeI ACTAGT 1 cut(s) 821
Sse9I AATT 5 cut(s) 466, 614, 638, 758, 770
SsiI CCGC 1 cut(s) 190
SspMI CTAG 5 cut(s) 162, 606, 632, 738, 822
SstI GAGCTC 1 cut(s) 186
StyD4I CCNGG 4 cut(s) 49, 198, 307, 513
StyI CCWWGG 2 cut(s) 605, 696
TaaI ACNGT 4 cut(s) 15, 106, 172, 319
TaqI TCGA 1 cut(s) 206
TasI AATT 5 cut(s) 466, 614, 638, 758, 770
TatI WGTACW 1 cut(s) 537
TauI GCSGC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 853
Tru9I TTAA 1 cut(s) 853
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 606
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 614
XceI RCATGY 3 cut(s) 89, 257, 553
XmaJI CCTAGG 1 cut(s) 605
XspI CTAG 5 cut(s) 162, 606, 632, 738, 822
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.