Rmu_sc0005958.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005958.1
OG0000195
Physical Location & Seq
Reverse (-)
6904 .. 8091
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005958.1_g000001.1.cds

Sequence Viewer

Length: 1029 bp
atgtatcaagagacatttatacccgacgcatatccacaaaatgaagcttatgagcctagaaaggaattcgttgaaggactactagctcaattgcaagcctcccaagctaaaatttcacaagagaccatggttcccgaaggatatcctcatgagcaagcgtatgagtctaggaagccttctcttgaagaattgctagctcaattgcaagcgtcccaagctcggttgcaagcttctcaagaaatacttatacataccaatgaggaacttgagactaaagtgtatatcgagcatcttgagcaagaatcctttatgcaagttgaaaatgatgatagtgatgttgatgtacaagaaattcagcttggttatgaaagtttcaatgtaagtggggtgagagactacacttcggaggaatgggtacaatattggaaatctaagcttccaaaggaatgggagatacttgaagatgattctgaagaggaggatgacttgtctagtgaggaggatacggagtttgaagtcgatgttaccaaggaggaagagagtccttcaatactttctgatggtcaagaaattgaagagacaaggactttctctccttccacatccatggagatccatcatgcacttcccaaggtggattgtagaatattgagcacttacgttattcatgagaggagtgggatcaaggtacttttacctcccaatccaccattaagtggccaatgtttctacaatgaggtgatggattggaaaggaaatgtagcacttgcactcaccttttcccatcactctcaagagcttctactacctattgttcctacgagcatcatttctacaccgcttgagaaggagaaggcaaggttggctcctagaagaaaaattgagaagagggggaagactaagaagctacacttttggccaccaattggagtattcttatgtagttcttggtctcgtctctatgacacatcgatgagtcccttagccccaaataatagggtggtcgcacttaagaagtatccaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

39.38

Weight (kDa)

4.67

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 716, 926
AciI CCGC 1 cut(s) 839
AclWI GGATC 2 cut(s) 607, 689
AcoI YGGCCR 2 cut(s) 718, 917
AcsI RAATTY 3 cut(s) 65, 111, 351
AcuI CTGAAG 1 cut(s) 492
AfaI GTAC 3 cut(s) 345, 417, 690
AfiI CCNNNNNNNGG 3 cut(s) 219, 716, 926
AflII CTTAAG 1 cut(s) 1010
AgsI TTSAA 8 cut(s) 74, 185, 320, 376, 461, 515, 549, 575
AjuI GAANNNNNNNTTGG 4 cut(s) 342, 374, 845, 877
Alw21I GWGCWC 1 cut(s) 656
Alw26I GTCTC 7 cut(s) 5, 116, 263, 387, 572, 957, 962
AlwI GGATC 2 cut(s) 607, 689
AoxI GGCC 2 cut(s) 718, 917
ApoI RAATTY 3 cut(s) 65, 111, 351
AsuHPI GGTGA 3 cut(s) 400, 751, 766
AsuNHI GCTAGC 1 cut(s) 193
BalI TGGCCA 2 cut(s) 720, 919
BbsI GAAGAC 1 cut(s) 902
Bbv12I GWGCWC 1 cut(s) 656
BccI CCATC 4 cut(s) 554, 624, 736, 792
BciVI GTATCC 2 cut(s) 496, 1029
BcoDI GTCTC 7 cut(s) 5, 116, 263, 387, 572, 957, 962
BfaI CTAG 6 cut(s) 57, 83, 168, 194, 492, 870
BfrI CTTAAG 1 cut(s) 1010
BfuI GTATCC 2 cut(s) 496, 1029
BmiI GGNNCC 2 cut(s) 132, 867
BmsI GCATC 2 cut(s) 298, 834
BmtI GCTAGC 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 902
Bpu10I CCTNAGC 1 cut(s) 982
BpuEI CTTGAG 5 cut(s) 219, 287, 314, 777, 863
Bsa29I ATCGAT 1 cut(s) 971
BsaI GGTCTC 2 cut(s) 116, 957
BsaJI CCNNGG 4 cut(s) 126, 528, 606, 630
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bsc4I CCNNNNNNNGG 3 cut(s) 219, 716, 926
BseCI ATCGAT 1 cut(s) 971
BseDI CCNNGG 4 cut(s) 126, 528, 606, 630
BseGI GGATG 2 cut(s) 487, 602
BseLI CCNNNNNNNGG 3 cut(s) 219, 716, 926
BseRI GAGGAG 3 cut(s) 491, 512, 688
BshFI GGCC 2 cut(s) 720, 919
BshVI ATCGAT 1 cut(s) 971
BsiHKAI GWGCWC 1 cut(s) 656
BslFI GGGAC 2 cut(s) 196, 963
BslI CCNNNNNNNGG 3 cut(s) 219, 716, 926
BsmAI GTCTC 7 cut(s) 5, 116, 263, 387, 572, 957, 962
BsmBI CGTCTC 1 cut(s) 962
BsmFI GGGAC 2 cut(s) 196, 963
BsnI GGCC 2 cut(s) 720, 919
Bso31I GGTCTC 2 cut(s) 116, 957
Bsp1286I GDGCHC 1 cut(s) 656
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 2 cut(s) 612, 681
Bsp19I CCATGG 2 cut(s) 126, 606
BspACI CCGC 1 cut(s) 839
BspANI GGCC 2 cut(s) 720, 919
BspDI ATCGAT 1 cut(s) 971
BspHI TCATGA 2 cut(s) 148, 667
BspLI GGNNCC 2 cut(s) 132, 867
BspOI GCTAGC 1 cut(s) 197
BspPI GGATC 2 cut(s) 607, 689
BspTI CTTAAG 1 cut(s) 1010
BspTNI GGTCTC 2 cut(s) 116, 957
BsrGI TGTACA 1 cut(s) 343
BssECI CCNNGG 4 cut(s) 126, 528, 606, 630
BssMI GATC 2 cut(s) 612, 681
BssT1I CCWWGG 4 cut(s) 126, 528, 606, 630
Bst6I CTCTTC 4 cut(s) 468, 531, 570, 881
BstAFI CTTAAG 1 cut(s) 1010
BstAUI TGTACA 1 cut(s) 343
BstC8I GCNNGC 5 cut(s) 96, 156, 195, 207, 228
BstDEI CTNAG 3 cut(s) 432, 900, 982
BstDSI CCRYGG 2 cut(s) 126, 606
BstF5I GGATG 2 cut(s) 487, 602
BstKTI GATC 2 cut(s) 615, 684
BstMAI GTCTC 7 cut(s) 5, 116, 263, 387, 572, 957, 962
BstMBI GATC 2 cut(s) 612, 681
BstMWI GCNNNNNNNGC 4 cut(s) 104, 215, 295, 863
BstV2I GAAGAC 1 cut(s) 902
BstX2I RGATCY 1 cut(s) 612
BstXI CCANNNNNNTGG 2 cut(s) 447, 607
BstYI RGATCY 1 cut(s) 612
Bsu15I ATCGAT 1 cut(s) 971
BsuI GTATCC 2 cut(s) 496, 1029
BsuRI GGCC 2 cut(s) 720, 919
BsuTUI ATCGAT 1 cut(s) 971
BtgI CCRYGG 2 cut(s) 126, 606
BtsCI GGATG 2 cut(s) 487, 602
Cac8I GCNNGC 5 cut(s) 96, 156, 195, 207, 228
CciI TCATGA 2 cut(s) 148, 667
ClaI ATCGAT 1 cut(s) 971
CseI GACGC 2 cut(s) 35, 198
Csp6I GTAC 3 cut(s) 344, 416, 689
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 5 cut(s) 127, 149, 607, 620, 668
CviQI GTAC 3 cut(s) 344, 416, 689
DdeI CTNAG 3 cut(s) 432, 900, 982
DpnI GATC 2 cut(s) 614, 683
DpnII GATC 2 cut(s) 612, 681
EaeI YGGCCR 2 cut(s) 718, 917
Eam1104I CTCTTC 4 cut(s) 468, 531, 570, 881
EarI CTCTTC 4 cut(s) 468, 531, 570, 881
Eco130I CCWWGG 4 cut(s) 126, 528, 606, 630
Eco31I GGTCTC 2 cut(s) 116, 957
Eco32I GATATC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 492
EcoRI GAATTC 1 cut(s) 65
EcoRV GATATC 1 cut(s) 143
EcoT14I CCWWGG 4 cut(s) 126, 528, 606, 630
ErhI CCWWGG 4 cut(s) 126, 528, 606, 630
Esp3I CGTCTC 1 cut(s) 962
FaeI CATG 5 cut(s) 130, 152, 610, 623, 671
FalI AAGNNNNNCTT 4 cut(s) 228, 260, 896, 928
FaqI GGGAC 2 cut(s) 196, 963
FatI CATG 5 cut(s) 126, 148, 606, 619, 667
FokI GGATG 2 cut(s) 494, 589
FspBI CTAG 6 cut(s) 57, 83, 168, 194, 492, 870
HaeIII GGCC 2 cut(s) 720, 919
HgaI GACGC 2 cut(s) 35, 198
Hin1II CATG 5 cut(s) 130, 152, 610, 623, 671
HindIII AAGCTT 3 cut(s) 45, 228, 434
HinfI GANTC 5 cut(s) 164, 302, 467, 541, 976
HphI GGTGA 3 cut(s) 400, 751, 766
Hpy188I TCNGA 3 cut(s) 406, 472, 559
Hpy188III TCNNGA 9 cut(s) 8, 134, 149, 182, 236, 293, 566, 668, 794
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 7 cut(s) 68, 131, 186, 555, 606, 841, 847
HpyCH4IV ACGT 1 cut(s) 660
HpyCH4V TGCA 6 cut(s) 94, 205, 226, 313, 623, 770
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 215, 295, 863
HpyF3I CTNAG 3 cut(s) 432, 900, 982
HpySE526I ACGT 1 cut(s) 660
Hsp92II CATG 5 cut(s) 130, 152, 610, 623, 671
Kzo9I GATC 2 cut(s) 612, 681
LmnI GCTCC 1 cut(s) 871
LweI GCATC 2 cut(s) 298, 834
MaeI CTAG 6 cut(s) 57, 83, 168, 194, 492, 870
MaeII ACGT 1 cut(s) 660
MaeIII GTNAC 1 cut(s) 523
MalI GATC 2 cut(s) 614, 683
MboI GATC 2 cut(s) 612, 681
MboII GAAGA 8 cut(s) 197, 473, 485, 548, 587, 885, 898, 907
MfeI CAATTG 3 cut(s) 89, 200, 924
MflI RGATCY 1 cut(s) 612
MhlI GDGCHC 1 cut(s) 656
MlsI TGGCCA 2 cut(s) 720, 919
MluCI AATT 9 cut(s) 65, 89, 111, 188, 200, 351, 570, 879, 924
MluNI TGGCCA 2 cut(s) 720, 919
MlyI GAGTC 3 cut(s) 173, 550, 985
Mox20I TGGCCA 2 cut(s) 720, 919
MscI TGGCCA 2 cut(s) 720, 919
MseI TTAA 2 cut(s) 713, 1011
MslI CAYNNNNRTG 3 cut(s) 255, 605, 971
Msp20I TGGCCA 2 cut(s) 720, 919
MspCI CTTAAG 1 cut(s) 1010
MunI CAATTG 3 cut(s) 89, 200, 924
MwoI GCNNNNNNNGC 4 cut(s) 104, 215, 295, 863
NcoI CCATGG 2 cut(s) 126, 606
NdeII GATC 2 cut(s) 612, 681
NheI GCTAGC 1 cut(s) 193
NlaIII CATG 5 cut(s) 130, 152, 610, 623, 671
NlaIV GGNNCC 2 cut(s) 132, 867
PagI TCATGA 2 cut(s) 148, 667
PfeI GAWTC 2 cut(s) 302, 467
PflMI CCANNNNNTGG 2 cut(s) 716, 926
PleI GAGTC 3 cut(s) 172, 549, 984
PpsI GAGTC 3 cut(s) 172, 549, 984
PspN4I GGNNCC 2 cut(s) 132, 867
PsuI RGATCY 1 cut(s) 612
RsaI GTAC 3 cut(s) 345, 417, 690
RsaNI GTAC 3 cut(s) 344, 416, 689
RseI CAYNNNNRTG 3 cut(s) 255, 605, 971
SaqAI TTAA 2 cut(s) 713, 1011
Sau3AI GATC 2 cut(s) 612, 681
SchI GAGTC 3 cut(s) 173, 550, 985
SduI GDGCHC 1 cut(s) 656
SfaNI GCATC 2 cut(s) 298, 834
SmiMI CAYNNNNRTG 3 cut(s) 255, 605, 971
SmlI CTYRAG 6 cut(s) 234, 266, 293, 792, 842, 1010
SmoI CTYRAG 6 cut(s) 234, 266, 293, 792, 842, 1010
Sse9I AATT 9 cut(s) 65, 89, 111, 188, 200, 351, 570, 879, 924
SsiI CCGC 1 cut(s) 839
SspI AATATT 2 cut(s) 422, 648
SspMI CTAG 6 cut(s) 57, 83, 168, 194, 492, 870
StyI CCWWGG 4 cut(s) 126, 528, 606, 630
TaiI ACGT 1 cut(s) 663
TaqI TCGA 3 cut(s) 285, 519, 971
TasI AATT 9 cut(s) 65, 89, 111, 188, 200, 351, 570, 879, 924
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 2 cut(s) 302, 467
Tru1I TTAA 2 cut(s) 713, 1011
Tru9I TTAA 2 cut(s) 713, 1011
TspDTI ATGAA 3 cut(s) 57, 381, 656
TspGWI ACGGA 1 cut(s) 521
Van91I CCANNNNNTGG 2 cut(s) 716, 926
Vha464I CTTAAG 1 cut(s) 1010
XapI RAATTY 3 cut(s) 65, 111, 351
XspI CTAG 6 cut(s) 57, 83, 168, 194, 492, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.