RchiOBHm_Chr2g0154821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000195
Physical Location & Seq
Reverse (-)
71875304 .. 71876431
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52378

Sequence Viewer

Length: 1080 bp
ATGGATCGGTGGAACTATGGATGGGAAGACCCGTGGAGATATGAGCAAGAAAGTTTATATGGTGGAGGTTATCAAGCTTATGAGCCTAGGAAGGAATTCGTTGAAGGACTACTAGCTCAATTGCAAGCTTCTCAAGCTCTCTTGCAAGCCTCCCAAGCTCGATTGCAAGCTTCTCAAGAGATGCTTATACATTCCAATGAGCAACTTAAGGCTAGTCTTGCACAAGAGCCACCCTTCACCATTTATGAGCATGAATCTTTCTTTGATCAAGTGGAGCCTATTTCAAGAGAAGAAGTGTATATCGAGCATCTTGAGCAAGAATCCTTTATGCAAGTTGAAAATGATAATAGTGATGTTGATGTACAAGAAATTGAGGTTGGTCATGAAAGTTTCAATGCAAGTGGGGTGAGAGACTACACTTCGGAGGAACCGGTGCAATATTGGAAATCTAATCTTCACAATGAAGAGGAGGTATATGAAGTTGATTCTGAAGAAGATGATAGCTTGTCTAGTGAGGAAGATGTGAAGCTTGAAGACTTACACCATGATCCCTTAATCGTTGAGGTCGATATTCCCAAGGAGAAAGAGAGTCCTTCAATACCTTGTGATGATGAAGAAATTGAAGAGCCAAGGACTTTCTTGCCTCCCATATCCATGGAGATCCATCATGAGCTTCCCAAGGTGGAGAGTAAGACATTGAGCACTTATGTTCTTAATGGAAAGATTGAGATCAAGGTACTTTTACCTCTCAATCCACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAGTGAACCTCTTGCACTTAACCTTTCCCATCACTCGCAAGAGCTTCTACCACCTATTGTTCCTATGAGCATAATTTCTACACCACTTGAGAAGGAGAAGGCAAGGAGATTGATCCATAGTAGAAAAATAGAGAAGAATGGGAATATTAAGAAGCTACACTTTTGGCCACCAATTGGAGTATTCTTATGTAGCTCTTGGTCTTGCCCCTATGATACATCAATGAGTCCCTTAGCCCCAAACAATAGGGTGGTCGTACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

41.45

Weight (kDa)

4.55

Isoelectric Point (pI)

62.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 764, 977
AclWI GGATC 4 cut(s) 12, 542, 655, 910
AcoI YGGCCR 1 cut(s) 968
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 510
AfaI GTAC 3 cut(s) 363, 738, 1059
AfiI CCNNNNNNNGG 2 cut(s) 764, 977
AflII CTTAAG 1 cut(s) 206
AgeI ACCGGT 1 cut(s) 430
AgsI TTSAA 7 cut(s) 104, 285, 338, 394, 533, 597, 623
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
Alw21I GWGCWC 1 cut(s) 704
Alw26I GTCTC 1 cut(s) 405
AlwI GGATC 4 cut(s) 12, 542, 655, 910
AoxI GGCC 1 cut(s) 968
ApoI RAATTY 1 cut(s) 95
AsiGI ACCGGT 1 cut(s) 430
Asp700I GAANNNNTTC 1 cut(s) 95
AspA2I CCTAGG 1 cut(s) 86
AsuHPI GGTGA 3 cut(s) 229, 418, 799
AvrII CCTAGG 1 cut(s) 86
BalI TGGCCA 1 cut(s) 970
BbsI GAAGAC 2 cut(s) 33, 540
Bbv12I GWGCWC 1 cut(s) 704
BccI CCATC 4 cut(s) 15, 672, 784, 840
BciVI GTATCC 1 cut(s) 1080
BclI TGATCA 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 4 cut(s) 87, 113, 213, 510
BfrI CTTAAG 1 cut(s) 206
BfuI GTATCC 1 cut(s) 1080
BlnI CCTAGG 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 276, 429
BmsI GCATC 2 cut(s) 171, 316
BpiI GAAGAC 2 cut(s) 33, 540
Bpu10I CCTNAGC 1 cut(s) 1033
BpuEI CTTGAG 4 cut(s) 117, 159, 332, 911
BsaBI GATNNNNATC 1 cut(s) 728
BsaJI CCNNGG 6 cut(s) 32, 86, 576, 629, 654, 678
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 2 cut(s) 764, 977
Bse118I RCCGGY 1 cut(s) 430
Bse8I GATNNNNATC 1 cut(s) 728
BseDI CCNNGG 6 cut(s) 32, 86, 576, 629, 654, 678
BseGI GGATG 1 cut(s) 26
BseJI GATNNNNATC 1 cut(s) 728
BseLI CCNNNNNNNGG 2 cut(s) 764, 977
BseRI GAGGAG 1 cut(s) 482
BshFI GGCC 1 cut(s) 970
BshTI ACCGGT 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 704
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 1014
BslI CCNNNNNNNGG 2 cut(s) 764, 977
BsmAI GTCTC 1 cut(s) 405
BsmFI GGGAC 1 cut(s) 1014
BsnI GGCC 1 cut(s) 970
Bsp1286I GDGCHC 1 cut(s) 704
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 6 cut(s) 4, 265, 547, 660, 729, 915
Bsp19I CCATGG 1 cut(s) 654
BspANI GGCC 1 cut(s) 970
BspHI TCATGA 2 cut(s) 382, 667
BspLI GGNNCC 2 cut(s) 276, 429
BspPI GGATC 4 cut(s) 12, 542, 655, 910
BspQI GCTCTTC 1 cut(s) 618
BspTI CTTAAG 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 430
BsrGI TGTACA 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 6 cut(s) 32, 86, 576, 629, 654, 678
BssMI GATC 6 cut(s) 4, 265, 547, 660, 729, 915
BssT1I CCWWGG 5 cut(s) 86, 576, 629, 654, 678
Bst6I CTCTTC 2 cut(s) 459, 618
BstAFI CTTAAG 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 126, 147, 168
BstDEI CTNAG 1 cut(s) 1033
BstDSI CCRYGG 2 cut(s) 32, 654
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 6 cut(s) 7, 268, 550, 663, 732, 918
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 6 cut(s) 4, 265, 547, 660, 729, 915
BstMWI GCNNNNNNNGC 4 cut(s) 134, 155, 218, 313
BstV2I GAAGAC 2 cut(s) 33, 540
BstX2I RGATCY 1 cut(s) 660
BstXI CCANNNNNNTGG 1 cut(s) 655
BstYI RGATCY 1 cut(s) 660
BsuI GTATCC 1 cut(s) 1080
BsuRI GGCC 1 cut(s) 970
BtgI CCRYGG 2 cut(s) 32, 654
BtsCI GGATG 1 cut(s) 26
Cac8I GCNNGC 3 cut(s) 126, 147, 168
CciI TCATGA 2 cut(s) 382, 667
Cfr10I RCCGGY 1 cut(s) 430
Csp6I GTAC 3 cut(s) 362, 737, 1058
CspAI ACCGGT 1 cut(s) 430
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 5 cut(s) 251, 383, 545, 655, 668
CviQI GTAC 3 cut(s) 362, 737, 1058
DdeI CTNAG 1 cut(s) 1033
DpnI GATC 6 cut(s) 6, 267, 549, 662, 731, 917
DpnII GATC 6 cut(s) 4, 265, 547, 660, 729, 915
EaeI YGGCCR 1 cut(s) 968
Eam1104I CTCTTC 2 cut(s) 459, 618
EarI CTCTTC 2 cut(s) 459, 618
Eco130I CCWWGG 5 cut(s) 86, 576, 629, 654, 678
Eco57I CTGAAG 1 cut(s) 510
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 5 cut(s) 86, 576, 629, 654, 678
ErhI CCWWGG 5 cut(s) 86, 576, 629, 654, 678
FaeI CATG 5 cut(s) 254, 386, 548, 658, 671
FalI AAGNNNNNCTT 4 cut(s) 168, 200, 947, 979
FaqI GGGAC 1 cut(s) 1014
FatI CATG 5 cut(s) 250, 382, 544, 654, 667
FbaI TGATCA 1 cut(s) 265
FokI GGATG 1 cut(s) 33
FspBI CTAG 4 cut(s) 87, 113, 213, 510
HaeIII GGCC 1 cut(s) 970
HapII CCGG 1 cut(s) 431
Hin1II CATG 5 cut(s) 254, 386, 548, 658, 671
HindIII AAGCTT 4 cut(s) 75, 126, 168, 527
HinfI GANTC 5 cut(s) 254, 320, 485, 589, 1027
HpaII CCGG 1 cut(s) 431
HphI GGTGA 3 cut(s) 229, 418, 799
Hpy166II GTNNAC 1 cut(s) 809
Hpy188I TCNGA 2 cut(s) 424, 490
Hpy188III TCNNGA 5 cut(s) 176, 285, 311, 383, 668
Hpy8I GTNNAC 1 cut(s) 809
HpyAV CCTTC 6 cut(s) 85, 98, 244, 603, 889, 895
HpyCH4V TGCA 8 cut(s) 124, 145, 166, 221, 331, 398, 436, 818
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 155, 218, 313
HpyF3I CTNAG 1 cut(s) 1033
Hsp92II CATG 5 cut(s) 254, 386, 548, 658, 671
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 6 cut(s) 4, 265, 547, 660, 729, 915
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 1 cut(s) 444
LweI GCATC 2 cut(s) 171, 316
MaeI CTAG 4 cut(s) 87, 113, 213, 510
MalI GATC 6 cut(s) 6, 267, 549, 662, 731, 917
MboI GATC 6 cut(s) 4, 265, 547, 660, 729, 915
MfeI CAATTG 2 cut(s) 119, 975
MflI RGATCY 1 cut(s) 660
MhlI GDGCHC 1 cut(s) 704
MlsI TGGCCA 1 cut(s) 970
MluCI AATT 6 cut(s) 95, 119, 369, 618, 876, 975
MluNI TGGCCA 1 cut(s) 970
MlyI GAGTC 2 cut(s) 598, 1036
Mox20I TGGCCA 1 cut(s) 970
MroXI GAANNNNTTC 1 cut(s) 95
MscI TGGCCA 1 cut(s) 970
MseI TTAA 6 cut(s) 207, 554, 714, 761, 822, 951
MslI CAYNNNNRTG 2 cut(s) 195, 653
Msp20I TGGCCA 1 cut(s) 970
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 1 cut(s) 431
MunI CAATTG 2 cut(s) 119, 975
MwoI GCNNNNNNNGC 4 cut(s) 134, 155, 218, 313
NcoI CCATGG 1 cut(s) 654
NdeII GATC 6 cut(s) 4, 265, 547, 660, 729, 915
NlaIII CATG 5 cut(s) 254, 386, 548, 658, 671
NlaIV GGNNCC 2 cut(s) 276, 429
PagI TCATGA 2 cut(s) 382, 667
PciSI GCTCTTC 1 cut(s) 618
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 3 cut(s) 254, 320, 485
PflMI CCANNNNNTGG 2 cut(s) 764, 977
PinAI ACCGGT 1 cut(s) 430
PleI GAGTC 2 cut(s) 597, 1035
PpsI GAGTC 2 cut(s) 597, 1035
PspN4I GGNNCC 2 cut(s) 276, 429
PsuI RGATCY 1 cut(s) 660
RsaI GTAC 3 cut(s) 363, 738, 1059
RsaNI GTAC 3 cut(s) 362, 737, 1058
RseI CAYNNNNRTG 2 cut(s) 195, 653
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 6 cut(s) 207, 554, 714, 761, 822, 951
Sau3AI GATC 6 cut(s) 4, 265, 547, 660, 729, 915
SchI GAGTC 2 cut(s) 598, 1036
SduI GDGCHC 1 cut(s) 704
SfaNI GCATC 2 cut(s) 171, 316
SmiMI CAYNNNNRTG 2 cut(s) 195, 653
SmlI CTYRAG 6 cut(s) 132, 174, 206, 311, 890, 1061
SmoI CTYRAG 6 cut(s) 132, 174, 206, 311, 890, 1061
Sse9I AATT 6 cut(s) 95, 119, 369, 618, 876, 975
SspI AATATT 2 cut(s) 440, 949
SspMI CTAG 4 cut(s) 87, 113, 213, 510
StyI CCWWGG 5 cut(s) 86, 576, 629, 654, 678
TaqI TCGA 3 cut(s) 160, 303, 567
TasI AATT 6 cut(s) 95, 119, 369, 618, 876, 975
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 3 cut(s) 254, 320, 485
Tru1I TTAA 6 cut(s) 207, 554, 714, 761, 822, 951
Tru9I TTAA 6 cut(s) 207, 554, 714, 761, 822, 951
TspDTI ATGAA 5 cut(s) 267, 399, 477, 492, 627
Van91I CCANNNNNTGG 2 cut(s) 764, 977
Vha464I CTTAAG 1 cut(s) 206
XapI RAATTY 1 cut(s) 95
XmaJI CCTAGG 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 4 cut(s) 87, 113, 213, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.