Rroxscaffold_6G00391690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000195
Physical Location & Seq
Reverse (-)
10345045 .. 10346133
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391690.1

Sequence Viewer

Length: 1038 bp
ATGCCTTGTTACAGTCAAGCTGGTGCCTTGTGTAATTCTCCATGGCATTCACCTTTTGATTGCTCATTGAGATTTGAGTACCCGGATTTTATGCGAGAGTATGAGTACAAGATGGGGATGCATCAAGAGACATGTGTACCCGAAGCATATCCACAAGGGCAAGCTTTTGAGCCTAGGAAGCCATCACTTGAAGAACAACTAGCTCAATTGGAAGCCTCTAATGCTCAATTGCAAGCCTCCCAAGCTCAATGTCTAGCATCCCAAGCTCCATTGCACGCTAAATTGGAAGCCTTTAATGCTCAATTGCAAGCTTCTCAAGAAACGACTTCACATTCCAATGAGCAACTTGAGCCTAGTCTTGAGCAAGAACCACCATTCACCATTTGTCATGAGCAAGATTCTTTCTTTGACCAATTGCCTATTCAAGATCGAGAGGGTGATATTCATGTACAAGAAAGTGAGCTTGGCTATGAAAGTTCCAATGCAAATAGGGTAAGAGACGACATTTCGGAGGAATCGGTGCAATATTGGAACTCTAATTTTCACAATGAAGAGGAGGTATATGAAGTTGATTCCGAAGAAGAGGATAGCTTGTTTAGTGAGAAGGATGTGGAGCTTGAAGACTTACACCATGATCCCTTAATCGTTGAGACCAATATTCCCAAGGAGGAAGAGAGTCCTTCAATACCTTGTGATGATGAAGAAATTGAAGAGCCAAGGACTTTCTCTCCTCCCACATCCATGGAGATCCATCATGAGCTTCCCAAGATAGAGAGTAGAATGTTGAGCACTTATGCACTTAATGAGAAGATTGAGATTAGGTACTTTTTACCTCTCAATCCACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAGTGGAGCACTTGCACTCACTATTTCCCATCACTCTCAAGAGTTTCTACCACCTATTGTTCCTAAGAGCATTATTTCTTCATCACTTGAGAAGGAGAATGCAAGGTTGGCTTCTAGAAGAAAAATAGAGAGAGAGGAGGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

39.64

Weight (kDa)

4.41

Isoelectric Point (pI)

74.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 851
AclWI GGATC 2 cut(s) 629, 742
AfaI GTAC 5 cut(s) 80, 107, 138, 450, 824
AfiI CCNNNNNNNGG 1 cut(s) 851
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 5 cut(s) 191, 425, 620, 684, 710
AjuI GAANNNNNNNTTGG 6 cut(s) 405, 437, 447, 479, 980, 1012
Alw21I GWGCWC 2 cut(s) 791, 901
Alw26I GTCTC 3 cut(s) 122, 492, 644
AlwI GGATC 2 cut(s) 629, 742
AspA2I CCTAGG 1 cut(s) 173
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 4 cut(s) 42, 370, 449, 886
AvrII CCTAGG 1 cut(s) 173
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BanI GGYRCC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 627
Bbv12I GWGCWC 2 cut(s) 791, 901
BccI CCATC 5 cut(s) 106, 190, 759, 871, 927
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 3 cut(s) 122, 492, 644
BfaI CTAG 5 cut(s) 174, 200, 254, 354, 1005
BlnI CCTAGG 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 3 cut(s) 108, 130, 266
BpiI GAAGAC 1 cut(s) 627
BpuEI CTTGAG 5 cut(s) 300, 368, 380, 912, 998
BpuMI CCSGG 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 5 cut(s) 41, 173, 663, 716, 741
BsaXI ACNNNNNCTCC 2 cut(s) 712, 742
Bsc4I CCNNNNNNNGG 1 cut(s) 851
Bse3DI GCAATG 1 cut(s) 269
BseDI CCNNGG 5 cut(s) 41, 173, 663, 716, 741
BseGI GGATG 4 cut(s) 123, 257, 613, 737
BseLI CCNNNNNNNGG 1 cut(s) 851
BseMI GCAATG 1 cut(s) 269
BseRI GAGGAG 2 cut(s) 569, 720
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 791, 901
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 851
BsmAI GTCTC 3 cut(s) 122, 492, 644
BsmBI CGTCTC 1 cut(s) 492
BsmI GAATGC 2 cut(s) 46, 994
Bso31I GGTCTC 1 cut(s) 644
Bsp1286I GDGCHC 2 cut(s) 791, 901
Bsp1407I TGTACA 1 cut(s) 448
Bsp143I GATC 3 cut(s) 427, 634, 747
Bsp19I CCATGG 2 cut(s) 41, 741
BspHI TCATGA 2 cut(s) 388, 754
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 2 cut(s) 629, 742
BspQI GCTCTTC 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 448
BssECI CCNNGG 5 cut(s) 41, 173, 663, 716, 741
BssMI GATC 3 cut(s) 427, 634, 747
BssT1I CCWWGG 5 cut(s) 41, 173, 663, 716, 741
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 4 cut(s) 546, 576, 666, 705
BstAUI TGTACA 1 cut(s) 448
BstC8I GCNNGC 4 cut(s) 162, 234, 276, 309
BstDEI CTNAG 1 cut(s) 954
BstDSI CCRYGG 2 cut(s) 41, 741
BstF5I GGATG 4 cut(s) 123, 257, 613, 737
BstKTI GATC 3 cut(s) 430, 637, 750
BstMAI GTCTC 3 cut(s) 122, 492, 644
BstMBI GATC 3 cut(s) 427, 634, 747
BstMWI GCNNNNNNNGC 7 cut(s) 178, 221, 242, 263, 296, 349, 998
BstNSI RCATGY 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 81
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 1 cut(s) 747
BstXI CCANNNNNNTGG 1 cut(s) 742
BstYI RGATCY 1 cut(s) 747
BtgI CCRYGG 2 cut(s) 41, 741
BtsCI GGATG 4 cut(s) 123, 257, 613, 737
Cac8I GCNNGC 4 cut(s) 162, 234, 276, 309
CciI TCATGA 2 cut(s) 388, 754
Csp6I GTAC 5 cut(s) 79, 106, 137, 449, 823
CviAII CATG 7 cut(s) 42, 132, 389, 446, 632, 742, 755
CviQI GTAC 5 cut(s) 79, 106, 137, 449, 823
DdeI CTNAG 1 cut(s) 954
DpnI GATC 3 cut(s) 429, 636, 749
DpnII GATC 3 cut(s) 427, 634, 747
Eam1104I CTCTTC 4 cut(s) 546, 576, 666, 705
EarI CTCTTC 4 cut(s) 546, 576, 666, 705
Eco130I CCWWGG 5 cut(s) 41, 173, 663, 716, 741
Eco31I GGTCTC 1 cut(s) 644
EcoT14I CCWWGG 5 cut(s) 41, 173, 663, 716, 741
EcoT22I ATGCAT 1 cut(s) 123
ErhI CCWWGG 5 cut(s) 41, 173, 663, 716, 741
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 7 cut(s) 45, 135, 392, 449, 635, 745, 758
FalI AAGNNNNNCTT 2 cut(s) 985, 1017
FatI CATG 7 cut(s) 41, 131, 388, 445, 631, 741, 754
FokI GGATG 4 cut(s) 130, 244, 620, 724
FspBI CTAG 5 cut(s) 174, 200, 254, 354, 1005
HapII CCGG 1 cut(s) 83
Hin1II CATG 7 cut(s) 45, 135, 392, 449, 635, 745, 758
HindIII AAGCTT 2 cut(s) 162, 309
HinfI GANTC 4 cut(s) 398, 515, 572, 676
HpaII CCGG 1 cut(s) 83
HphI GGTGA 4 cut(s) 42, 370, 449, 886
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 511, 577
Hpy188III TCNNGA 9 cut(s) 125, 317, 359, 389, 425, 431, 755, 929, 1005
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 3 cut(s) 598, 690, 976
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4V TGCA 9 cut(s) 121, 232, 274, 307, 485, 523, 797, 905, 992
HpyF10VI GCNNNNNNNGC 7 cut(s) 178, 221, 242, 263, 296, 349, 998
HpyF3I CTNAG 1 cut(s) 954
Hsp92II CATG 7 cut(s) 45, 135, 392, 449, 635, 745, 758
Kzo9I GATC 3 cut(s) 427, 634, 747
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 3 cut(s) 271, 613, 896
LpnPI CCDG 2 cut(s) 6, 96
LweI GCATC 3 cut(s) 108, 130, 266
MaeI CTAG 5 cut(s) 174, 200, 254, 354, 1005
MaeIII GTNAC 1 cut(s) 8
MalI GATC 3 cut(s) 429, 636, 749
MboI GATC 3 cut(s) 427, 634, 747
MfeI CAATTG 4 cut(s) 206, 227, 302, 413
MflI RGATCY 1 cut(s) 747
MhlI GDGCHC 2 cut(s) 791, 901
MluCI AATT 8 cut(s) 34, 206, 227, 281, 302, 413, 538, 705
MlyI GAGTC 1 cut(s) 685
Mph1103I ATGCAT 1 cut(s) 123
MseI TTAA 5 cut(s) 294, 641, 801, 848, 1036
MslI CAYNNNNRTG 2 cut(s) 336, 740
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 83
MunI CAATTG 4 cut(s) 206, 227, 302, 413
Mva1269I GAATGC 2 cut(s) 46, 994
MwoI GCNNNNNNNGC 7 cut(s) 178, 221, 242, 263, 296, 349, 998
NciI CCSGG 1 cut(s) 83
NcoI CCATGG 2 cut(s) 41, 741
NdeII GATC 3 cut(s) 427, 634, 747
NlaIII CATG 7 cut(s) 45, 135, 392, 449, 635, 745, 758
NlaIV GGNNCC 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 123
NspI RCATGY 1 cut(s) 135
PagI TCATGA 2 cut(s) 388, 754
PciI ACATGT 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 705
PctI GAATGC 2 cut(s) 46, 994
PfeI GAWTC 3 cut(s) 398, 515, 572
PflMI CCANNNNNTGG 1 cut(s) 851
PleI GAGTC 1 cut(s) 684
PpsI GAGTC 1 cut(s) 684
PscI ACATGT 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 747
RsaI GTAC 5 cut(s) 80, 107, 138, 450, 824
RsaNI GTAC 5 cut(s) 79, 106, 137, 449, 823
RseI CAYNNNNRTG 2 cut(s) 336, 740
SapI GCTCTTC 1 cut(s) 705
SaqAI TTAA 5 cut(s) 294, 641, 801, 848, 1036
Sau3AI GATC 3 cut(s) 427, 634, 747
SchI GAGTC 1 cut(s) 685
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 2 cut(s) 791, 901
SfaNI GCATC 3 cut(s) 108, 130, 266
SmiMI CAYNNNNRTG 2 cut(s) 336, 740
SmlI CTYRAG 5 cut(s) 315, 347, 359, 927, 977
SmoI CTYRAG 5 cut(s) 315, 347, 359, 927, 977
Sse9I AATT 8 cut(s) 34, 206, 227, 281, 302, 413, 538, 705
SspI AATATT 2 cut(s) 527, 658
SspMI CTAG 5 cut(s) 174, 200, 254, 354, 1005
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 5 cut(s) 41, 173, 663, 716, 741
TaaI ACNGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 430
TasI AATT 8 cut(s) 34, 206, 227, 281, 302, 413, 538, 705
TatI WGTACW 2 cut(s) 105, 448
TfiI GAWTC 3 cut(s) 398, 515, 572
Tru1I TTAA 5 cut(s) 294, 641, 801, 848, 1036
Tru9I TTAA 5 cut(s) 294, 641, 801, 848, 1036
TspDTI ATGAA 6 cut(s) 434, 486, 564, 579, 714, 960
Van91I CCANNNNNTGG 1 cut(s) 851
XbaI TCTAGA 1 cut(s) 1004
XceI RCATGY 1 cut(s) 135
XmaJI CCTAGG 1 cut(s) 173
XspI CTAG 5 cut(s) 174, 200, 254, 354, 1005
Zsp2I ATGCAT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.