Rroxscaffold_2G00122990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000195
Physical Location & Seq
Forward (+)
56476534 .. 56481056
4523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00122990.1

Sequence Viewer

Length: 936 bp
ATGTCCAAGCCCAGCTCCACTTTGATCCGGGTTCGTGCCCAACATGATCTGTCCGCCGCACATCGATTCGTTCTTGCCGAACCCATAGGCCTTGAGCCTTGCTCTGCAAGCTATGGATGGGATGATCGTAGGGGATATGAGCAACAAAGTTATTATGGTGAAGGTTATCAAGAATGGAATCCCTATGCCGAGAGTCCTATACCTTGTTACAACCAACCTTGTGCTTTGTGTAATTCTCCGTGGCATTCACCTTTTGAGTGTTCTTTGAGGTTTGAGTACCGGGATTTTATGCAAGAATATGAGTACAAGATGGGGATGTATCAAGAGACATGTGTACCCAAAACATATCCACAAGAGCAAGTTTTTGAGCCTAGGAAGCCATCACTTGAAGAACAACTTTCTCAATTGGAAGCCTCTAATGCTCAATTGCAAGCCTCCCAAGCTCAATGTCTAGCCACCCAAGCTCGATTGCATGCTAAATTGGAAGCCTTTAATGCTCAATTGCAAGCTTCTCAAGAAATGACTTCACATTCCAATGAGCAACTTGAGCCTAGTTTTGAGCAAGAGCCACCATTCACCATTTGTCATGAGCAAGATTCTTTCTTTGATCAAGTGGAGCCTAATTCAAGAGAAGAAATATATTTTGAGCAGCATCATGAACAAGAGTTGCCTCTTCAAGATCGAGAGGGCGATGTTCATGTACTTGAAAGTGTGATTGGTTATGGAAATTTTGAAGCAAGTGGGTTGAGAGACTACACTTCGGAGGAACCAGTGCAATATTGGAAATCTAATATTCACAATGAAGATGAGGTATATGAAGTTGATTCCGAAGAAGAGGATAGCATGTCTAGTGAGGAGGATGCGGAGCTTGAAGAGCTACACCATGATCCCTTAATCCCGAGGCCGATATTCCCAAGGAGGAAGAGAGTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

36.32

Weight (kDa)

4.52

Isoelectric Point (pI)

68.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 54, 57, 863
AclWI GGATC 2 cut(s) 19, 881
AcsI RAATTY 1 cut(s) 727
AfaI GTAC 4 cut(s) 278, 305, 336, 702
AflIII ACRYGT 1 cut(s) 329
AgsI TTSAA 6 cut(s) 389, 627, 677, 707, 734, 872
AjuI GAANNNNNNNTTGG 2 cut(s) 699, 731
AluBI AGCT 7 cut(s) 15, 111, 443, 464, 509, 868, 877
AluI AGCT 7 cut(s) 15, 111, 443, 464, 509, 868, 877
Alw26I GTCTC 2 cut(s) 320, 744
AlwI GGATC 2 cut(s) 19, 881
Ama87I CYCGRG 1 cut(s) 898
AoxI GGCC 2 cut(s) 88, 902
ApeKI GCWGC 1 cut(s) 649
ApoI RAATTY 1 cut(s) 727
AspA2I CCTAGG 1 cut(s) 371
AsuC2I CCSGG 2 cut(s) 29, 281
AsuHPI GGTGA 3 cut(s) 170, 240, 568
AvaI CYCGRG 1 cut(s) 898
AvrII CCTAGG 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 40
BaeI ACNNNNGTAYC 2 cut(s) 318, 351
BbvI GCAGC 1 cut(s) 661
BccI CCATC 3 cut(s) 111, 304, 388
BclI TGATCA 1 cut(s) 607
BcnI CCSGG 2 cut(s) 29, 281
BcoDI GTCTC 2 cut(s) 320, 744
BfaI CTAG 4 cut(s) 372, 452, 552, 849
BisI GCNGC 2 cut(s) 57, 650
BlnI CCTAGG 1 cut(s) 371
BlsI GCNGC 2 cut(s) 58, 651
Bme1390I CCNGG 2 cut(s) 29, 281
BmeT110I CYCGRG 1 cut(s) 898
BmiI GGNNCC 2 cut(s) 618, 768
BmrFI CCNGG 2 cut(s) 29, 281
BmsI GCATC 2 cut(s) 661, 850
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpuEI CTTGAG 3 cut(s) 113, 498, 566
BpuMI CCSGG 2 cut(s) 29, 281
Bsa29I ATCGAT 1 cut(s) 64
BsaJI CCNNGG 4 cut(s) 239, 371, 899, 914
Bse1I ACTGG 1 cut(s) 770
BseCI ATCGAT 1 cut(s) 64
BseDI CCNNGG 4 cut(s) 239, 371, 899, 914
BseGI GGATG 4 cut(s) 122, 127, 321, 865
BseNI ACTGG 1 cut(s) 770
BseRI GAGGAG 1 cut(s) 869
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 1 cut(s) 661
BseYI CCCAGC 1 cut(s) 11
BshFI GGCC 2 cut(s) 90, 904
BshVI ATCGAT 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 898
BsiSI CCGG 2 cut(s) 28, 280
BsmAI GTCTC 2 cut(s) 320, 744
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 2 cut(s) 90, 904
BsoBI CYCGRG 1 cut(s) 898
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 6 cut(s) 24, 46, 124, 607, 679, 886
BspACI CCGC 3 cut(s) 54, 57, 863
BspANI GGCC 2 cut(s) 90, 904
BspDI ATCGAT 1 cut(s) 64
BspHI TCATGA 2 cut(s) 586, 655
BspLI GGNNCC 2 cut(s) 618, 768
BspPI GGATC 2 cut(s) 19, 881
BspQI GCTCTTC 1 cut(s) 867
BsrI ACTGG 1 cut(s) 770
BssECI CCNNGG 4 cut(s) 239, 371, 899, 914
BssMI GATC 6 cut(s) 24, 46, 124, 607, 679, 886
BssT1I CCWWGG 2 cut(s) 371, 914
Bst6I CTCTTC 4 cut(s) 678, 828, 867, 917
BstC8I GCNNGC 4 cut(s) 109, 432, 474, 507
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 4 cut(s) 122, 127, 321, 865
BstKTI GATC 6 cut(s) 27, 49, 127, 610, 682, 889
BstMAI GTCTC 2 cut(s) 320, 744
BstMBI GATC 6 cut(s) 24, 46, 124, 607, 679, 886
BstMWI GCNNNNNNNGC 8 cut(s) 108, 376, 419, 440, 461, 494, 547, 874
BstNSI RCATGY 3 cut(s) 333, 476, 847
BstSCI CCNGG 2 cut(s) 27, 279
BstSLI GKGCMC 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 661
Bsu15I ATCGAT 1 cut(s) 64
BsuRI GGCC 2 cut(s) 90, 904
BsuTUI ATCGAT 1 cut(s) 64
BtgI CCRYGG 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 705
BtsCI GGATG 4 cut(s) 122, 127, 321, 865
BtsIMutI CAGTG 1 cut(s) 777
Cac8I GCNNGC 4 cut(s) 109, 432, 474, 507
CciI TCATGA 2 cut(s) 586, 655
ClaI ATCGAT 1 cut(s) 64
Csp6I GTAC 4 cut(s) 277, 304, 335, 701
CviAII CATG 8 cut(s) 44, 330, 473, 587, 656, 698, 844, 884
CviQI GTAC 4 cut(s) 277, 304, 335, 701
DpnI GATC 6 cut(s) 26, 48, 126, 609, 681, 888
DpnII GATC 6 cut(s) 24, 46, 124, 607, 679, 886
Eam1104I CTCTTC 4 cut(s) 678, 828, 867, 917
EarI CTCTTC 4 cut(s) 678, 828, 867, 917
EciI GGCGGA 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 371, 914
Eco147I AGGCCT 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 898
EcoT14I CCWWGG 2 cut(s) 371, 914
ErhI CCWWGG 2 cut(s) 371, 914
FaeI CATG 8 cut(s) 47, 333, 476, 590, 659, 701, 847, 887
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FatI CATG 8 cut(s) 43, 329, 472, 586, 655, 697, 843, 883
FbaI TGATCA 1 cut(s) 607
Fnu4HI GCNGC 2 cut(s) 57, 650
FokI GGATG 4 cut(s) 129, 134, 328, 872
Fsp4HI GCNGC 2 cut(s) 57, 650
FspBI CTAG 4 cut(s) 372, 452, 552, 849
GluI GCNGC 2 cut(s) 57, 650
GsaI CCCAGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 90, 904
HapII CCGG 2 cut(s) 28, 280
Hin1II CATG 8 cut(s) 47, 333, 476, 590, 659, 701, 847, 887
HindIII AAGCTT 1 cut(s) 507
HinfI GANTC 6 cut(s) 66, 178, 193, 596, 824, 927
HpaII CCGG 2 cut(s) 28, 280
HphI GGTGA 3 cut(s) 170, 240, 568
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 2 cut(s) 763, 829
Hpy188III TCNNGA 9 cut(s) 170, 323, 515, 587, 627, 656, 677, 683, 898
Hpy8I GTNNAC 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 155
HpyCH4V TGCA 6 cut(s) 107, 292, 430, 472, 505, 775
HpyF10VI GCNNNNNNNGC 8 cut(s) 108, 376, 419, 440, 461, 494, 547, 874
Hsp92II CATG 8 cut(s) 47, 333, 476, 590, 659, 701, 847, 887
Ksp22I TGATCA 1 cut(s) 607
Kzo9I GATC 6 cut(s) 24, 46, 124, 607, 679, 886
LguI GCTCTTC 1 cut(s) 867
LmnI GCTCC 3 cut(s) 20, 616, 865
LpnPI CCDG 4 cut(s) 25, 41, 293, 783
Lsp1109I GCAGC 1 cut(s) 661
LweI GCATC 2 cut(s) 661, 850
MaeI CTAG 4 cut(s) 372, 452, 552, 849
MaeIII GTNAC 1 cut(s) 206
MalI GATC 6 cut(s) 26, 48, 126, 609, 681, 888
MboI GATC 6 cut(s) 24, 46, 124, 607, 679, 886
MboII GAAGA 8 cut(s) 401, 644, 665, 815, 842, 845, 884, 934
MfeI CAATTG 3 cut(s) 404, 425, 500
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 7 cut(s) 232, 404, 425, 479, 500, 622, 727
MlyI GAGTC 2 cut(s) 202, 936
MseI TTAA 3 cut(s) 492, 893, 934
MslI CAYNNNNRTG 1 cut(s) 534
MspI CCGG 2 cut(s) 28, 280
MspR9I CCNGG 2 cut(s) 29, 281
MunI CAATTG 3 cut(s) 404, 425, 500
Mva1269I GAATGC 1 cut(s) 244
MwoI GCNNNNNNNGC 8 cut(s) 108, 376, 419, 440, 461, 494, 547, 874
NciI CCSGG 2 cut(s) 29, 281
NdeII GATC 6 cut(s) 24, 46, 124, 607, 679, 886
NlaIII CATG 8 cut(s) 47, 333, 476, 590, 659, 701, 847, 887
NlaIV GGNNCC 2 cut(s) 618, 768
NmeAIII GCCGAG 1 cut(s) 214
NspI RCATGY 3 cut(s) 333, 476, 847
PaeI GCATGC 1 cut(s) 476
PagI TCATGA 2 cut(s) 586, 655
PceI AGGCCT 1 cut(s) 90
PciI ACATGT 1 cut(s) 329
PciSI GCTCTTC 1 cut(s) 867
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 4 cut(s) 66, 178, 596, 824
PkrI GCNGC 2 cut(s) 58, 651
PleI GAGTC 2 cut(s) 201, 935
PpsI GAGTC 2 cut(s) 201, 935
PscI ACATGT 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 11
PspN4I GGNNCC 2 cut(s) 618, 768
RsaI GTAC 4 cut(s) 278, 305, 336, 702
RsaNI GTAC 4 cut(s) 277, 304, 335, 701
RseI CAYNNNNRTG 1 cut(s) 534
SapI GCTCTTC 1 cut(s) 867
SaqAI TTAA 3 cut(s) 492, 893, 934
SatI GCNGC 2 cut(s) 57, 650
Sau3AI GATC 6 cut(s) 24, 46, 124, 607, 679, 886
SchI GAGTC 2 cut(s) 202, 936
ScrFI CCNGG 2 cut(s) 29, 281
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 2 cut(s) 661, 850
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 3 cut(s) 92, 513, 545
SmoI CTYRAG 3 cut(s) 92, 513, 545
SphI GCATGC 1 cut(s) 476
Sse9I AATT 7 cut(s) 232, 404, 425, 479, 500, 622, 727
SseBI AGGCCT 1 cut(s) 90
SsiI CCGC 3 cut(s) 54, 57, 863
SspI AATATT 2 cut(s) 779, 793
SspMI CTAG 4 cut(s) 372, 452, 552, 849
StuI AGGCCT 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 27, 279
StyI CCWWGG 2 cut(s) 371, 914
TaqI TCGA 3 cut(s) 64, 466, 682
TasI AATT 7 cut(s) 232, 404, 425, 479, 500, 622, 727
TatI WGTACW 2 cut(s) 303, 700
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 4 cut(s) 66, 178, 596, 824
Tru1I TTAA 3 cut(s) 492, 893, 934
Tru9I TTAA 3 cut(s) 492, 893, 934
TscAI CASTG 1 cut(s) 777
TseI GCWGC 1 cut(s) 649
TspDTI ATGAA 4 cut(s) 672, 686, 816, 831
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 1 cut(s) 777
XapI RAATTY 1 cut(s) 727
XceI RCATGY 3 cut(s) 333, 476, 847
XcmI CCANNNNNNNNNTGG 1 cut(s) 777
XmaJI CCTAGG 1 cut(s) 371
XspI CTAG 4 cut(s) 372, 452, 552, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.