Rroxscaffold_6G00391820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000195
Physical Location & Seq
Reverse (-)
10648703 .. 10658821
10119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391820.1

Sequence Viewer

Length: 978 bp
ATGGATTGGAAAGGAAGTGGAGCACTTGCACTTAACCCTTCACATCACACTCAAGAGCTTCTACCACCTATTGTTCCTACGAGCATCATTTCTACACCACTTTTGAAGGAGAGAGCAAGATTGGCTCCTAGAAGAAAAATTGAGAAGAAGAGGAAGATTAAGAAGCTCCACTTTTGGTCACCAATTGCAATATTCATGGATAGCTCTTGGTCTTGCCTCTATGACATGTCAAGGAGTCCCTTAGCCCCTAACAATAGGGTGGTCGCACTTGAGAAGGTTGTTGTGAGGTGTGTTGGAGGTGATCAAGGCTATGAGCTTAATGGAGGACCCTTGCCCTTATTCCTTGCCTATTGTGTGACGCATTGCTCTAGGACATTCTATGTTCTAAATGGAGTCGACTTTCTCATGAGCACTTTGAGCTATTATGGAGCATATGTTAAGGAAGTCAAGGCCTTGTGCCTTGAGGTTGGTCTCATATTAGTATTCTTCAAAGGTCGTGAGCAATGGAGGGTCGACAAAGGGGGTTTCCAATGCATGCTTAGGAATTGTCAACTCTTGGATAACAAGAAGAATTTGTGTCCAAGAACATTAGCTTTGCTCAAGCAAACACCATTTGAAAATGTTTTCGATGCATTCCATGGTGGCTACATAGAGGAGAAGTCAGCCAAGAAATCCGATGATTTCATTACCCTCCTCCTGCAGGCCTACAACCATGAAAATGACCTCTTCATCTTTGGAAAGAAAAAATTCAGGATCTTGACAAGAAACATTTCAAAGATCCTTGGACTGCAGCAAAAGGTGAGTTGGTCCCAAAGACTTCGAGGGTGCAAATCAGTCGGAATTTTGTCCAGTAGTTTTTTCCAAAGACAGCGAGGATTAACAAAAGAGCTGTGGAGAAAGCTCTGGAAGATGCCCTCAAAGACAAGTCAACAACAGAGGAAGGGATTGAGAAGAATGACAAAAATGTGGCAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

37.51

Weight (kDa)

9.98

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 396, 513
AclWI GGATC 2 cut(s) 761, 772
AcsI RAATTY 3 cut(s) 571, 746, 840
AfiI CCNNNNNNNGG 1 cut(s) 700
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 4 cut(s) 106, 490, 617, 774
AluBI AGCT 8 cut(s) 58, 166, 204, 316, 420, 593, 889, 901
AluI AGCT 8 cut(s) 58, 166, 204, 316, 420, 593, 889, 901
Alw21I GWGCWC 2 cut(s) 25, 413
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 2 cut(s) 761, 772
AoxI GGCC 2 cut(s) 450, 702
ApeKI GCWGC 1 cut(s) 790
ApoI RAATTY 3 cut(s) 571, 746, 840
Asp700I GAANNNNTTC 2 cut(s) 746, 769
AspS9I GGNCC 2 cut(s) 326, 807
AsuHPI GGTGA 3 cut(s) 171, 311, 811
AvaII GGWCC 2 cut(s) 326, 807
Bbv12I GWGCWC 2 cut(s) 25, 413
BbvI GCAGC 1 cut(s) 802
BcgI CGANNNNNNTGC 2 cut(s) 817, 851
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 2 cut(s) 129, 369
BfmI CTRYAG 2 cut(s) 698, 788
BisI GCNGC 1 cut(s) 791
BlsI GCNGC 1 cut(s) 792
Bme18I GGWCC 2 cut(s) 326, 807
BmgT120I GGNCC 2 cut(s) 326, 807
BmiI GGNNCC 3 cut(s) 126, 328, 809
BmsI GCATC 3 cut(s) 93, 619, 900
Bpu10I CCTNAGC 2 cut(s) 241, 539
BpuEI CTTGAG 4 cut(s) 36, 290, 482, 584
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 2 cut(s) 637, 781
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 700
Bse1I ACTGG 1 cut(s) 849
Bse3DI GCAATG 2 cut(s) 361, 509
BseDI CCNNGG 2 cut(s) 637, 781
BseLI CCNNNNNNNGG 1 cut(s) 700
BseMI GCAATG 2 cut(s) 361, 509
BseNI ACTGG 1 cut(s) 849
BseRI GAGGAG 2 cut(s) 668, 683
BseXI GCAGC 1 cut(s) 802
BshFI GGCC 2 cut(s) 452, 704
BsiHKAI GWGCWC 2 cut(s) 25, 413
BslFI GGGAC 2 cut(s) 222, 793
BslI CCNNNNNNNGG 1 cut(s) 700
BsmAI GTCTC 1 cut(s) 476
BsmFI GGGAC 2 cut(s) 222, 793
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 2 cut(s) 452, 704
Bso31I GGTCTC 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 25, 413
Bsp143I GATC 3 cut(s) 301, 753, 777
Bsp19I CCATGG 1 cut(s) 637
BspANI GGCC 2 cut(s) 452, 704
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 3 cut(s) 126, 328, 809
BspMAI CTGCAG 2 cut(s) 702, 792
BspPI GGATC 2 cut(s) 761, 772
BspTNI GGTCTC 1 cut(s) 476
BsrDI GCAATG 2 cut(s) 361, 509
BsrI ACTGG 1 cut(s) 849
BssECI CCNNGG 2 cut(s) 637, 781
BssMI GATC 3 cut(s) 301, 753, 777
BssT1I CCWWGG 2 cut(s) 637, 781
Bst6I CTCTTC 2 cut(s) 143, 731
BstC8I GCNNGC 2 cut(s) 536, 702
BstDEI CTNAG 2 cut(s) 241, 539
BstDSI CCRYGG 1 cut(s) 637
BstEII GGTNACC 1 cut(s) 177
BstENI CCTNNNNNAGG 1 cut(s) 698
BstKTI GATC 3 cut(s) 304, 756, 780
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 3 cut(s) 301, 753, 777
BstMWI GCNNNNNNNGC 2 cut(s) 122, 417
BstNSI RCATGY 2 cut(s) 229, 538
BstPI GGTNACC 1 cut(s) 177
BstSFI CTRYAG 2 cut(s) 698, 788
BstV1I GCAGC 1 cut(s) 802
BstX2I RGATCY 2 cut(s) 753, 777
BstYI RGATCY 2 cut(s) 753, 777
BsuRI GGCC 2 cut(s) 452, 704
BtgI CCRYGG 1 cut(s) 637
Cac8I GCNNGC 2 cut(s) 536, 702
CciI TCATGA 1 cut(s) 405
Cfr13I GGNCC 2 cut(s) 326, 807
CseI GACGC 1 cut(s) 367
CviAII CATG 6 cut(s) 196, 226, 406, 535, 638, 713
DdeI CTNAG 2 cut(s) 241, 539
DpnI GATC 3 cut(s) 303, 755, 779
DpnII GATC 3 cut(s) 301, 753, 777
Eam1104I CTCTTC 2 cut(s) 143, 731
EarI CTCTTC 2 cut(s) 143, 731
Eco130I CCWWGG 2 cut(s) 637, 781
Eco147I AGGCCT 2 cut(s) 452, 704
Eco31I GGTCTC 1 cut(s) 476
Eco47I GGWCC 2 cut(s) 326, 807
Eco91I GGTNACC 1 cut(s) 177
EcoNI CCTNNNNNAGG 1 cut(s) 698
EcoO109I RGGNCCY 1 cut(s) 326
EcoO65I GGTNACC 1 cut(s) 177
EcoT14I CCWWGG 2 cut(s) 637, 781
EcoT22I ATGCAT 2 cut(s) 536, 634
ErhI CCWWGG 2 cut(s) 637, 781
FaeI CATG 6 cut(s) 199, 229, 409, 538, 641, 716
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FaqI GGGAC 2 cut(s) 222, 793
FatI CATG 6 cut(s) 195, 225, 405, 534, 637, 712
FauNDI CATATG 1 cut(s) 433
FbaI TGATCA 1 cut(s) 301
FblI GTMKAC 2 cut(s) 396, 513
Fnu4HI GCNGC 1 cut(s) 791
Fsp4HI GCNGC 1 cut(s) 791
FspBI CTAG 2 cut(s) 129, 369
GluI GCNGC 1 cut(s) 791
HaeIII GGCC 2 cut(s) 452, 704
HgaI GACGC 1 cut(s) 367
Hin1II CATG 6 cut(s) 199, 229, 409, 538, 641, 716
HincII GTYRAC 4 cut(s) 397, 514, 551, 929
HindII GTYRAC 4 cut(s) 397, 514, 551, 929
HinfI GANTC 2 cut(s) 235, 393
HphI GGTGA 3 cut(s) 171, 311, 811
Hpy166II GTNNAC 4 cut(s) 397, 514, 551, 929
Hpy188I TCNGA 2 cut(s) 676, 839
Hpy188III TCNNGA 6 cut(s) 53, 406, 497, 751, 757, 904
Hpy8I GTNNAC 4 cut(s) 397, 514, 551, 929
HpyAV CCTTC 4 cut(s) 48, 100, 268, 934
HpyCH4V TGCA 7 cut(s) 29, 188, 534, 632, 700, 790, 828
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 417
HpyF3I CTNAG 2 cut(s) 241, 539
Hsp92II CATG 6 cut(s) 199, 229, 409, 538, 641, 716
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 3 cut(s) 301, 753, 777
LmnI GCTCC 4 cut(s) 20, 130, 171, 428
LpnPI CCDG 5 cut(s) 686, 710, 736, 862, 889
Lsp1109I GCAGC 1 cut(s) 802
LweI GCATC 3 cut(s) 93, 619, 900
MaeI CTAG 2 cut(s) 129, 369
MaeIII GTNAC 2 cut(s) 177, 355
MalI GATC 3 cut(s) 303, 755, 779
MboI GATC 3 cut(s) 301, 753, 777
MboII GAAGA 9 cut(s) 144, 157, 160, 166, 478, 580, 718, 919, 963
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 2 cut(s) 753, 777
MhlI GDGCHC 2 cut(s) 25, 413
MluCI AATT 6 cut(s) 138, 183, 544, 571, 746, 840
MlyI GAGTC 2 cut(s) 244, 402
MmeI TCCRAC 2 cut(s) 274, 817
Mph1103I ATGCAT 2 cut(s) 536, 634
MroXI GAANNNNTTC 2 cut(s) 746, 769
MseI TTAA 6 cut(s) 33, 159, 318, 438, 878, 976
MslI CAYNNNNRTG 1 cut(s) 717
MunI CAATTG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 632
MwoI GCNNNNNNNGC 2 cut(s) 122, 417
NcoI CCATGG 1 cut(s) 637
NdeI CATATG 1 cut(s) 433
NdeII GATC 3 cut(s) 301, 753, 777
NlaIII CATG 6 cut(s) 199, 229, 409, 538, 641, 716
NlaIV GGNNCC 3 cut(s) 126, 328, 809
NmuCI GTSAC 2 cut(s) 177, 355
NsiI ATGCAT 2 cut(s) 536, 634
NspI RCATGY 2 cut(s) 229, 538
PaeI GCATGC 1 cut(s) 538
PagI TCATGA 1 cut(s) 405
PceI AGGCCT 2 cut(s) 452, 704
PciI ACATGT 1 cut(s) 225
PctI GAATGC 1 cut(s) 632
PdmI GAANNNNTTC 2 cut(s) 746, 769
PkrI GCNGC 1 cut(s) 792
PleI GAGTC 2 cut(s) 243, 401
PpsI GAGTC 2 cut(s) 243, 401
PpuMI RGGWCCY 1 cut(s) 326
PscI ACATGT 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 326
PspEI GGTNACC 1 cut(s) 177
PspN4I GGNNCC 3 cut(s) 126, 328, 809
PspPI GGNCC 2 cut(s) 326, 807
PspPPI RGGWCCY 1 cut(s) 326
PstI CTGCAG 2 cut(s) 702, 792
PsuI RGATCY 2 cut(s) 753, 777
RseI CAYNNNNRTG 1 cut(s) 717
SalI GTCGAC 2 cut(s) 395, 512
SaqAI TTAA 6 cut(s) 33, 159, 318, 438, 878, 976
SatI GCNGC 1 cut(s) 791
Sau3AI GATC 3 cut(s) 301, 753, 777
Sau96I GGNCC 2 cut(s) 326, 807
SbfI CCTGCAGG 1 cut(s) 702
SchI GAGTC 2 cut(s) 244, 402
SdaI CCTGCAGG 1 cut(s) 702
SduI GDGCHC 2 cut(s) 25, 413
SfaNI GCATC 3 cut(s) 93, 619, 900
SfcI CTRYAG 2 cut(s) 698, 788
SinI GGWCC 2 cut(s) 326, 807
SmiMI CAYNNNNRTG 1 cut(s) 717
SmlI CTYRAG 4 cut(s) 51, 269, 461, 599
SmoI CTYRAG 4 cut(s) 51, 269, 461, 599
SphI GCATGC 1 cut(s) 538
Sse8387I CCTGCAGG 1 cut(s) 702
Sse9I AATT 6 cut(s) 138, 183, 544, 571, 746, 840
SseBI AGGCCT 2 cut(s) 452, 704
SspI AATATT 1 cut(s) 192
SspMI CTAG 2 cut(s) 129, 369
StuI AGGCCT 2 cut(s) 452, 704
StyI CCWWGG 2 cut(s) 637, 781
TaqI TCGA 4 cut(s) 396, 513, 627, 820
TasI AATT 6 cut(s) 138, 183, 544, 571, 746, 840
Tru1I TTAA 6 cut(s) 33, 159, 318, 438, 878, 976
Tru9I TTAA 6 cut(s) 33, 159, 318, 438, 878, 976
TseFI GTSAC 2 cut(s) 177, 355
TseI GCWGC 1 cut(s) 790
Tsp45I GTSAC 2 cut(s) 177, 355
TspDTI ATGAA 4 cut(s) 184, 673, 718, 729
VpaK11BI GGWCC 2 cut(s) 326, 807
XagI CCTNNNNNAGG 1 cut(s) 698
XapI RAATTY 3 cut(s) 571, 746, 840
XceI RCATGY 2 cut(s) 229, 538
XmiI GTMKAC 2 cut(s) 396, 513
XmnI GAANNNNTTC 2 cut(s) 746, 769
XspI CTAG 2 cut(s) 129, 369
Zsp2I ATGCAT 2 cut(s) 536, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.