Rroxscaffold_2G00089850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000195
Physical Location & Seq
Forward (+)
11750081 .. 11751169
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089850.1

Sequence Viewer

Length: 894 bp
ATGGGATATGAGCAACCTCCTCAAGATCAAGCTTATGAACCTACAAATCCATCCATTGAAGAATTGTTTGCTCAATTTAAAGCTATAAGTGAGAGTGTAGATCCAATCATGGAGCAAGTCAAGGCTAGCTTACTTCAAGAGCAACCTCCCACCACTTTATATTTGCAAGAGCCTTTCTTTGATCAAGTAGAGCCTATTTCAAGAGAAGATGTACATATCAAGCATCTTGATGAGGAGGATTCTGAGTTTGAAGTGATGCACCACAATCCCTTATTCATTGAGGCTGTACTTGAACATAATTCTAAAGAGGAGGATGACTTATCTAGTGAGGAGGATGCGGAGCTTCAAGTCATATACCATAATCCTTTATTCATTGAGGCCGATGTTTCCAAGGAGGAAGAGAGTCACTCAATAATTTGTGATGATGAAGAAGTTGAAGAGCCAAGGACTTTATCTCCTCCCACATCCACGGAGATCCATCATGTGCTTCCCAAGGTGGATTGTAGAATATTGAGCACTTATGTTTTTAATGAGAGGATTGGGATCAAGGTACTTTTACCTCCCAATCCACCATTAAGTGGTCAATGTTTCAACAAAGAGGTGATGGATTGGAAAGGAAATGGAGCACTTGCACTCACCCTTTCCCATCACTCTCAAGAGCTTCTACCACCTATTGTTCATATGAGCATCATTTCTAATCCACTTGAGAAGGAGAAGGCAAGGATATTGGCTCCTAGAAGAAAAATTGAGAAGAAGAGGAAGATTAAGAAGCTACACTTTTGTTCACCAATTGGATTATTCATGGACAACTCTTGGTCTTGTCTCTATGATACATCAAGGAGTCCCTTAGCCCCAAACAATAGGGTGATCGTACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

34.09

Weight (kDa)

4.84

Isoelectric Point (pI)

68.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 578
AciI CCGC 1 cut(s) 338
AclWI GGATC 3 cut(s) 95, 469, 551
AfaI GTAC 4 cut(s) 213, 288, 552, 873
AfiI CCNNNNNNNGG 1 cut(s) 578
AgsI TTSAA 8 cut(s) 59, 137, 201, 251, 293, 347, 437, 592
AluBI AGCT 6 cut(s) 32, 83, 129, 343, 661, 772
AluI AGCT 6 cut(s) 32, 83, 129, 343, 661, 772
Alw21I GWGCWC 2 cut(s) 518, 628
Alw26I GTCTC 1 cut(s) 827
AlwI GGATC 3 cut(s) 95, 469, 551
AoxI GGCC 1 cut(s) 378
AsuHPI GGTGA 4 cut(s) 613, 628, 777, 877
AsuNHI GCTAGC 1 cut(s) 125
Bbv12I GWGCWC 2 cut(s) 518, 628
BccI CCATC 4 cut(s) 58, 486, 598, 654
BciVI GTATCC 1 cut(s) 894
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 827
BfaI CTAG 3 cut(s) 126, 324, 735
BfuI GTATCC 1 cut(s) 894
BmiI GGNNCC 1 cut(s) 732
BmsI GCATC 4 cut(s) 232, 246, 325, 696
BmtI GCTAGC 1 cut(s) 129
BplI GAGNNNNNCTC 2 cut(s) 392, 424
Bpu10I CCTNAGC 1 cut(s) 847
BpuEI CTTGAG 3 cut(s) 6, 639, 725
BsaBI GATNNNNATC 1 cut(s) 542
BsaJI CCNNGG 4 cut(s) 390, 443, 468, 492
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse8I GATNNNNATC 1 cut(s) 542
BseDI CCNNGG 4 cut(s) 390, 443, 468, 492
BseGI GGATG 4 cut(s) 50, 319, 340, 464
BseJI GATNNNNATC 1 cut(s) 542
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMII CTCAG 1 cut(s) 234
BseRI GAGGAG 5 cut(s) 9, 248, 323, 344, 447
BshFI GGCC 1 cut(s) 380
BsiHKAI GWGCWC 2 cut(s) 518, 628
BslFI GGGAC 1 cut(s) 828
BslI CCNNNNNNNGG 1 cut(s) 578
BsmAI GTCTC 1 cut(s) 827
BsmFI GGGAC 1 cut(s) 828
BsnI GGCC 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 518, 628
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 6 cut(s) 25, 100, 181, 474, 543, 867
BspACI CCGC 1 cut(s) 338
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 732
BspOI GCTAGC 1 cut(s) 129
BspPI GGATC 3 cut(s) 95, 469, 551
BspQI GCTCTTC 1 cut(s) 432
BsrGI TGTACA 1 cut(s) 211
BssECI CCNNGG 4 cut(s) 390, 443, 468, 492
BssMI GATC 6 cut(s) 25, 100, 181, 474, 543, 867
BssT1I CCWWGG 3 cut(s) 390, 443, 492
Bst6I CTCTTC 3 cut(s) 393, 432, 749
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 2 cut(s) 243, 847
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 4 cut(s) 50, 319, 340, 464
BstKTI GATC 6 cut(s) 28, 103, 184, 477, 546, 870
BstMAI GTCTC 1 cut(s) 827
BstMBI GATC 6 cut(s) 25, 100, 181, 474, 543, 867
BstX2I RGATCY 2 cut(s) 100, 474
BstYI RGATCY 2 cut(s) 100, 474
BsuI GTATCC 1 cut(s) 894
BsuRI GGCC 1 cut(s) 380
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 4 cut(s) 50, 319, 340, 464
Cac8I GCNNGC 1 cut(s) 127
Csp6I GTAC 4 cut(s) 212, 287, 551, 872
CviAII CATG 3 cut(s) 109, 482, 802
CviQI GTAC 4 cut(s) 212, 287, 551, 872
DdeI CTNAG 2 cut(s) 243, 847
DpnI GATC 6 cut(s) 27, 102, 183, 476, 545, 869
DpnII GATC 6 cut(s) 25, 100, 181, 474, 543, 867
DraI TTTAAA 1 cut(s) 79
Eam1104I CTCTTC 3 cut(s) 393, 432, 749
EarI CTCTTC 3 cut(s) 393, 432, 749
Eco130I CCWWGG 3 cut(s) 390, 443, 492
EcoT14I CCWWGG 3 cut(s) 390, 443, 492
ErhI CCWWGG 3 cut(s) 390, 443, 492
FaeI CATG 3 cut(s) 112, 485, 805
FalI AAGNNNNNCTT 4 cut(s) 113, 145, 761, 793
FaqI GGGAC 1 cut(s) 828
FatI CATG 3 cut(s) 108, 481, 801
FauNDI CATATG 1 cut(s) 681
FbaI TGATCA 1 cut(s) 181
FokI GGATG 4 cut(s) 37, 326, 347, 451
FspBI CTAG 3 cut(s) 126, 324, 735
HaeIII GGCC 1 cut(s) 380
Hin1II CATG 3 cut(s) 112, 485, 805
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 3 cut(s) 239, 403, 841
HphI GGTGA 4 cut(s) 613, 628, 777, 877
Hpy166II GTNNAC 1 cut(s) 785
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 5 cut(s) 23, 137, 201, 227, 656
Hpy8I GTNNAC 1 cut(s) 785
HpyAV CCTTC 2 cut(s) 703, 709
HpyCH4V TGCA 3 cut(s) 166, 259, 632
HpyF3I CTNAG 2 cut(s) 243, 847
Hsp92II CATG 3 cut(s) 112, 485, 805
Ksp22I TGATCA 1 cut(s) 181
Kzo9I GATC 6 cut(s) 25, 100, 181, 474, 543, 867
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 4 cut(s) 112, 340, 623, 736
LweI GCATC 4 cut(s) 232, 246, 325, 696
MaeI CTAG 3 cut(s) 126, 324, 735
MaeIII GTNAC 1 cut(s) 404
MalI GATC 6 cut(s) 27, 102, 183, 476, 545, 869
MboI GATC 6 cut(s) 25, 100, 181, 474, 543, 867
MboII GAAGA 9 cut(s) 71, 218, 410, 440, 449, 750, 763, 766, 772
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 2 cut(s) 100, 474
MhlI GDGCHC 2 cut(s) 518, 628
MluCI AATT 6 cut(s) 62, 74, 298, 414, 744, 789
MlyI GAGTC 2 cut(s) 412, 850
MseI TTAA 4 cut(s) 78, 528, 575, 765
MslI CAYNNNNRTG 1 cut(s) 228
MunI CAATTG 1 cut(s) 789
NdeI CATATG 1 cut(s) 681
NdeII GATC 6 cut(s) 25, 100, 181, 474, 543, 867
NheI GCTAGC 1 cut(s) 125
NlaIII CATG 3 cut(s) 112, 485, 805
NlaIV GGNNCC 1 cut(s) 732
NmuCI GTSAC 1 cut(s) 404
PciSI GCTCTTC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 578
PleI GAGTC 2 cut(s) 411, 849
PpsI GAGTC 2 cut(s) 411, 849
PspN4I GGNNCC 1 cut(s) 732
PsuI RGATCY 2 cut(s) 100, 474
RsaI GTAC 4 cut(s) 213, 288, 552, 873
RsaNI GTAC 4 cut(s) 212, 287, 551, 872
RseI CAYNNNNRTG 1 cut(s) 228
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 4 cut(s) 78, 528, 575, 765
Sau3AI GATC 6 cut(s) 25, 100, 181, 474, 543, 867
SchI GAGTC 2 cut(s) 412, 850
SduI GDGCHC 2 cut(s) 518, 628
SfaNI GCATC 4 cut(s) 232, 246, 325, 696
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 4 cut(s) 21, 654, 704, 875
SmoI CTYRAG 4 cut(s) 21, 654, 704, 875
Sse9I AATT 6 cut(s) 62, 74, 298, 414, 744, 789
SsiI CCGC 1 cut(s) 338
SspI AATATT 1 cut(s) 510
SspMI CTAG 3 cut(s) 126, 324, 735
StyI CCWWGG 3 cut(s) 390, 443, 492
TasI AATT 6 cut(s) 62, 74, 298, 414, 744, 789
TatI WGTACW 2 cut(s) 211, 286
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 4 cut(s) 78, 528, 575, 765
Tru9I TTAA 4 cut(s) 78, 528, 575, 765
TseFI GTSAC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 6 cut(s) 51, 265, 361, 441, 668, 790
TspGWI ACGGA 1 cut(s) 485
Van91I CCANNNNNTGG 1 cut(s) 578
XspI CTAG 3 cut(s) 126, 324, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.