Rmu_ssc0000252.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000252.1
OG0000195
Physical Location & Seq
Forward (+)
147524 .. 148030
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000252.1_g000026.1.cds

Sequence Viewer

Length: 507 bp
atggatcgatggagctatggatgggatgactcgaggggatatgagcaagaatgtttctatggtggaggtcatcaagagtggaattctcatgcggtgggttctatgtctttttgtaatgaaacttgtgctttgtgtaattctccgtggcattcacgttttgagtgctctatgagatttgaatgccgaaattttatgcaagagcatgagtacatgtatcaagagacatttgtacccgacacatatccacaagatgaagcttatgagcctagtaagggattcgttgaaggactactagctcaattgcaagcctcccgagatctattacatgcctctcaagctagaatttcacaagagaccatggttcccgaagcatatcctcatgagcaagcatatgagtctaggaggccttctcttgaagaattgctagctcaattgcaagcttcccaaacccaattgcaagcctcacaagctcaattgcaagcttctcaagaaatgcttgcacattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

19.5

Weight (kDa)

4.67

Isoelectric Point (pI)

74.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 3 cut(s) 82, 187, 342
AfaI GTAC 2 cut(s) 209, 231
AfiI CCNNNNNNNGG 1 cut(s) 272
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 3 cut(s) 179, 284, 416
AluBI AGCT 8 cut(s) 15, 257, 296, 338, 428, 440, 470, 482
AluI AGCT 8 cut(s) 15, 257, 296, 338, 428, 440, 470, 482
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 2 cut(s) 215, 347
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 2 cut(s) 31, 312
AoxI GGCC 1 cut(s) 404
ApoI RAATTY 3 cut(s) 82, 187, 342
AsuNHI GCTAGC 1 cut(s) 424
AvaI CYCGRG 2 cut(s) 31, 312
BaeI ACNNNNGTAYC 2 cut(s) 213, 246
Bbv12I GWGCWC 1 cut(s) 167
BccI CCATC 2 cut(s) 3, 15
BcoDI GTCTC 2 cut(s) 215, 347
BfaI CTAG 5 cut(s) 267, 293, 339, 399, 425
BglII AGATCT 1 cut(s) 316
BmeT110I CYCGRG 2 cut(s) 31, 312
BmiI GGNNCC 1 cut(s) 363
BmtI GCTAGC 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 394, 426
BpuEI CTTGAG 2 cut(s) 318, 471
Bsa29I ATCGAT 1 cut(s) 7
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 143, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 272
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 143, 357
BseGI GGATG 2 cut(s) 26, 31
BseLI CCNNNNNNNGG 1 cut(s) 272
BshFI GGCC 1 cut(s) 406
BshVI ATCGAT 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 2 cut(s) 31, 312
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 2 cut(s) 215, 347
BsmI GAATGC 2 cut(s) 148, 185
BsnI GGCC 1 cut(s) 406
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 2 cut(s) 31, 312
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 2 cut(s) 4, 316
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 7
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 363
BspOI GCTAGC 1 cut(s) 428
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 347
BssECI CCNNGG 2 cut(s) 143, 357
BssMI GATC 2 cut(s) 4, 316
BssT1I CCWWGG 1 cut(s) 357
BstC8I GCNNGC 7 cut(s) 306, 387, 426, 438, 459, 480, 498
BstDSI CCRYGG 2 cut(s) 143, 357
BstF5I GGATG 2 cut(s) 26, 31
BstKTI GATC 2 cut(s) 7, 319
BstMAI GTCTC 2 cut(s) 215, 347
BstMBI GATC 2 cut(s) 4, 316
BstMWI GCNNNNNNNGC 2 cut(s) 335, 467
BstNSI RCATGY 2 cut(s) 214, 329
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
Bsu15I ATCGAT 1 cut(s) 7
BsuRI GGCC 1 cut(s) 406
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 2 cut(s) 143, 357
BtsCI GGATG 2 cut(s) 26, 31
Cac8I GCNNGC 7 cut(s) 306, 387, 426, 438, 459, 480, 498
CciI TCATGA 1 cut(s) 379
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 2 cut(s) 208, 230
CviAII CATG 6 cut(s) 89, 203, 211, 326, 358, 380
CviQI GTAC 2 cut(s) 208, 230
DpnI GATC 2 cut(s) 6, 318
DpnII GATC 2 cut(s) 4, 316
Eco130I CCWWGG 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 406
Eco31I GGTCTC 1 cut(s) 347
Eco88I CYCGRG 2 cut(s) 31, 312
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 6 cut(s) 92, 206, 214, 329, 361, 383
FalI AAGNNNNNCTT 1 cut(s) 480
FatI CATG 6 cut(s) 88, 202, 210, 325, 357, 379
FauNDI CATATG 1 cut(s) 391
FokI GGATG 2 cut(s) 33, 38
FspBI CTAG 5 cut(s) 267, 293, 339, 399, 425
HaeIII GGCC 1 cut(s) 406
Hin1II CATG 6 cut(s) 92, 206, 214, 329, 361, 383
HindIII AAGCTT 3 cut(s) 255, 438, 480
HinfI GANTC 3 cut(s) 29, 276, 395
Hpy188III TCNNGA 7 cut(s) 74, 218, 312, 365, 380, 413, 488
HpyAV CCTTC 2 cut(s) 278, 417
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 6 cut(s) 196, 304, 436, 457, 478, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 467
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 6 cut(s) 92, 206, 214, 329, 361, 383
Kzo9I GATC 2 cut(s) 4, 316
LmnI GCTCC 1 cut(s) 12
MaeI CTAG 5 cut(s) 267, 293, 339, 399, 425
MaeII ACGT 1 cut(s) 154
MalI GATC 2 cut(s) 6, 318
MboI GATC 2 cut(s) 4, 316
MboII GAAGA 1 cut(s) 428
MfeI CAATTG 4 cut(s) 299, 431, 452, 473
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 9 cut(s) 82, 136, 187, 299, 342, 419, 431, 452, 473
MlyI GAGTC 2 cut(s) 23, 404
MnlI CCTC 7 cut(s) 27, 59, 319, 340, 387, 396, 472
MseI TTAA 1 cut(s) 505
MunI CAATTG 4 cut(s) 299, 431, 452, 473
Mva1269I GAATGC 2 cut(s) 148, 185
MwoI GCNNNNNNNGC 2 cut(s) 335, 467
NcoI CCATGG 1 cut(s) 357
NdeI CATATG 1 cut(s) 391
NdeII GATC 2 cut(s) 4, 316
NheI GCTAGC 1 cut(s) 424
NlaIII CATG 6 cut(s) 92, 206, 214, 329, 361, 383
NlaIV GGNNCC 1 cut(s) 363
NspI RCATGY 2 cut(s) 214, 329
PaeR7I CTCGAG 1 cut(s) 31
PagI TCATGA 1 cut(s) 379
PceI AGGCCT 1 cut(s) 406
PciI ACATGT 1 cut(s) 210
PctI GAATGC 2 cut(s) 148, 185
PfeI GAWTC 1 cut(s) 276
PleI GAGTC 2 cut(s) 23, 403
PpsI GAGTC 2 cut(s) 23, 403
PscI ACATGT 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 363
PspXI VCTCGAGB 1 cut(s) 31
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 2 cut(s) 209, 231
RsaNI GTAC 2 cut(s) 208, 230
SaqAI TTAA 1 cut(s) 505
Sau3AI GATC 2 cut(s) 4, 316
SchI GAGTC 2 cut(s) 23, 404
SduI GDGCHC 1 cut(s) 167
Sfr274I CTCGAG 1 cut(s) 31
SlaI CTCGAG 1 cut(s) 31
SmlI CTYRAG 3 cut(s) 31, 333, 486
SmoI CTYRAG 3 cut(s) 31, 333, 486
Sse9I AATT 9 cut(s) 82, 136, 187, 299, 342, 419, 431, 452, 473
SseBI AGGCCT 1 cut(s) 406
SsiI CCGC 1 cut(s) 92
SspMI CTAG 5 cut(s) 267, 293, 339, 399, 425
StuI AGGCCT 1 cut(s) 406
StyI CCWWGG 1 cut(s) 357
TaiI ACGT 1 cut(s) 157
TaqI TCGA 2 cut(s) 7, 32
TasI AATT 9 cut(s) 82, 136, 187, 299, 342, 419, 431, 452, 473
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 1 cut(s) 505
Tru9I TTAA 1 cut(s) 505
TspDTI ATGAA 2 cut(s) 132, 267
TspGWI ACGGA 1 cut(s) 132
XapI RAATTY 3 cut(s) 82, 187, 342
XceI RCATGY 2 cut(s) 214, 329
XhoI CTCGAG 1 cut(s) 31
XspI CTAG 5 cut(s) 267, 293, 339, 399, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.