Rmu_sc0000082.1_g000052

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000082.1
OG0000195
Physical Location & Seq
Forward (+)
182123 .. 182527
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000082.1_g000052.1.cds

Sequence Viewer

Length: 405 bp
atggatcaatggagctatggatgggatgatcgtaggggatatgagcaacaaaatttctatagtggagattatcaagaatggaatacatatgccgagagtcctatgccttgttacaaccaagcttgtgccttgtgtaattctccatggcattcaccttttgaatgctctttgagatttgagcatccggattttatgcgagagtatgagtacaagatgggggtgtatcaagagacatttgtacccgaagcatatccacaagagcaagcttttgagcctaggaagccatcacttgaagaacaactagctcaattggaagcctctaatgctcaattgcaagcctcccaagctcaatgtctagcctcccaagctcgattgcatgctaaattggaagccttcaatgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.78

Weight (kDa)

4.53

Isoelectric Point (pI)

62.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 184
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 52
AfaI GTAC 2 cut(s) 209, 240
AgsI TTSAA 3 cut(s) 161, 293, 397
AluBI AGCT 6 cut(s) 15, 122, 266, 305, 347, 368
AluI AGCT 6 cut(s) 15, 122, 266, 305, 347, 368
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 184
ApoI RAATTY 1 cut(s) 52
AspA2I CCTAGG 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 144
AvrII CCTAGG 1 cut(s) 275
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BccI CCATC 3 cut(s) 15, 208, 292
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 3 cut(s) 276, 302, 356
BfmI CTRYAG 1 cut(s) 58
BlnI CCTAGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 143, 275
BsaWI WCCGGW 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 143, 275
BseGI GGATG 3 cut(s) 26, 31, 181
BsiSI CCGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 224
BsmI GAATGC 2 cut(s) 148, 167
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 2 cut(s) 4, 28
Bsp19I CCATGG 1 cut(s) 143
BspEI TCCGGA 1 cut(s) 184
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 143, 275
BssMI GATC 2 cut(s) 4, 28
BssT1I CCWWGG 2 cut(s) 143, 275
BstC8I GCNNGC 3 cut(s) 264, 336, 378
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 3 cut(s) 26, 31, 181
BstKTI GATC 2 cut(s) 7, 31
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 4, 28
BstMWI GCNNNNNNNGC 5 cut(s) 280, 323, 344, 365, 398
BstNSI RCATGY 1 cut(s) 380
BstSFI CTRYAG 1 cut(s) 58
BtgI CCRYGG 1 cut(s) 143
BtsCI GGATG 3 cut(s) 26, 31, 181
Cac8I GCNNGC 3 cut(s) 264, 336, 378
Csp6I GTAC 2 cut(s) 208, 239
CviAII CATG 2 cut(s) 144, 377
CviQI GTAC 2 cut(s) 208, 239
DpnI GATC 2 cut(s) 6, 30
DpnII GATC 2 cut(s) 4, 28
Eco130I CCWWGG 2 cut(s) 143, 275
EcoT14I CCWWGG 2 cut(s) 143, 275
ErhI CCWWGG 2 cut(s) 143, 275
FaeI CATG 2 cut(s) 147, 380
FatI CATG 2 cut(s) 143, 376
FauNDI CATATG 1 cut(s) 88
FokI GGATG 3 cut(s) 33, 38, 168
FspBI CTAG 3 cut(s) 276, 302, 356
HapII CCGG 1 cut(s) 185
Hin1II CATG 2 cut(s) 147, 380
HindIII AAGCTT 2 cut(s) 120, 264
HinfI GANTC 1 cut(s) 97
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 144
Hpy188III TCNNGA 3 cut(s) 74, 185, 227
HpyAV CCTTC 1 cut(s) 403
HpyCH4V TGCA 2 cut(s) 334, 376
HpyF10VI GCNNNNNNNGC 5 cut(s) 280, 323, 344, 365, 398
Hsp92II CATG 2 cut(s) 147, 380
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 4, 28
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 1 cut(s) 198
LweI GCATC 1 cut(s) 190
MaeI CTAG 3 cut(s) 276, 302, 356
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 6, 30
MboI GATC 2 cut(s) 4, 28
MboII GAAGA 1 cut(s) 305
MfeI CAATTG 2 cut(s) 308, 329
MluCI AATT 5 cut(s) 52, 136, 308, 329, 383
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 3 cut(s) 328, 349, 370
MroI TCCGGA 1 cut(s) 184
MseI TTAA 1 cut(s) 403
MspI CCGG 1 cut(s) 185
MunI CAATTG 2 cut(s) 308, 329
Mva1269I GAATGC 2 cut(s) 148, 167
MwoI GCNNNNNNNGC 5 cut(s) 280, 323, 344, 365, 398
NcoI CCATGG 1 cut(s) 143
NdeI CATATG 1 cut(s) 88
NdeII GATC 2 cut(s) 4, 28
NlaIII CATG 2 cut(s) 147, 380
NmeAIII GCCGAG 1 cut(s) 118
NspI RCATGY 1 cut(s) 380
PaeI GCATGC 1 cut(s) 380
PctI GAATGC 2 cut(s) 148, 167
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
RsaI GTAC 2 cut(s) 209, 240
RsaNI GTAC 2 cut(s) 208, 239
SaqAI TTAA 1 cut(s) 403
Sau3AI GATC 2 cut(s) 4, 28
SchI GAGTC 1 cut(s) 106
SetI ASST 7 cut(s) 17, 124, 157, 268, 307, 349, 370
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 58
SphI GCATGC 1 cut(s) 380
Sse9I AATT 5 cut(s) 52, 136, 308, 329, 383
SspMI CTAG 3 cut(s) 276, 302, 356
StyI CCWWGG 2 cut(s) 143, 275
TaqI TCGA 1 cut(s) 370
TasI AATT 5 cut(s) 52, 136, 308, 329, 383
TatI WGTACW 1 cut(s) 207
Tru1I TTAA 1 cut(s) 403
Tru9I TTAA 1 cut(s) 403
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 380
XmaJI CCTAGG 1 cut(s) 275
XspI CTAG 3 cut(s) 276, 302, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.