Rmu_sc0008506.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008506.1
OG0000195
Physical Location & Seq
Reverse (-)
50821 .. 52284
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008506.1_g000012.1.cds

Sequence Viewer

Length: 1317 bp
atggatcaatggagctatggatgggaagatccgaggggatatgagcaaaaaaatttctatggtggaggtcaccaagagtggaattcttatgcggtgggttctatgtccttttgcaataaaacttgtgctttgtgtaattctccgtggcattcaccttttgagtgctcattgagatttgagtgctcggattttatgcaagggtgtgagtacaagatgggcatgtatcatgagatatttgtacccgatggatatccacaagatgaagcttatgagcctaggaaagaatttgttgacggactactagctcaattacaagcctcccgagatcttttacaagcctcccgagatcttttacaagcctctcaagttaggatttcacaagagaccatggtgcccgaagaatatcctcatgagcaagcatatgagtctaggaagccttctcttgaagaattgctagttcaattgcaagcttcccacacccaattgcaagccttccaagctcgattgcaagcttctcaagaaatgcttatacatttgaatgatgatgttgatgtacaagaaagagagcttggttatgaaagtttcaatgcaagtggggtgagagactgcacttcggaggaatgggtacaatattggaaatctaagcttccaaatgaaggggagatatttgaagatgattccgaagaagatgatgtcttgtctagtgaggaggatgcggaatttgaagttatacaccataatcccttattcatcgaggaggatgcggagcttgagatcatgcaccataatcccttattcattgaggtcgatattcccatggaggaagagagtccttcaatactttgtgacgatgaagaaattgaagagccaaagactttctctcctcctatatccaaggagatccatcatgagcttcccaaggtggagagtagagcattgagcacttatgttcttaatgagagcattaggatcaatgtacttttaccttccaatccaccattaagtggtcaatgtttctacaatgaggtgatggattggaaaggaaatggagcacttgcactcaccctttcccatcactctcaagaggttctaccacctatttttcctatgagcatcatttctacaccacttttgaaggagaaggcaaggttggctcctataagaacaattatgaagaagaggaagattaaaaagctacacttttgctcgccaattggaatattcatagttagctcttggtcttgcctctatgatacgtcaaggagtcccttagccccaaacaatagggtggtcgtacttgagcagtatccaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

438

Amino Acids

50.44

Weight (kDa)

4.63

Isoelectric Point (pI)

66.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 391
AccB7I CCANNNNNTGG 1 cut(s) 1004
AciI CCGC 3 cut(s) 92, 716, 764
AclWI GGATC 4 cut(s) 12, 23, 895, 977
AcsI RAATTY 4 cut(s) 52, 82, 284, 719
AfaI GTAC 6 cut(s) 209, 240, 555, 627, 978, 1296
AfiI CCNNNNNNNGG 2 cut(s) 656, 1004
AgsI TTSAA 9 cut(s) 446, 461, 538, 586, 671, 725, 837, 863, 1135
AjuI GAANNNNNNNTTGG 4 cut(s) 552, 584, 1133, 1165
Alw21I GWGCWC 4 cut(s) 167, 185, 944, 1054
Alw26I GTCTC 2 cut(s) 377, 597
AlwI GGATC 4 cut(s) 12, 23, 895, 977
Ama87I CYCGRG 2 cut(s) 321, 342
ApoI RAATTY 4 cut(s) 52, 82, 284, 719
AspA2I CCTAGG 1 cut(s) 275
AsuHPI GGTGA 5 cut(s) 62, 144, 610, 1039, 1054
AvaI CYCGRG 2 cut(s) 321, 342
AvrII CCTAGG 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 396
BanI GGYRCC 1 cut(s) 391
Bbv12I GWGCWC 4 cut(s) 167, 185, 944, 1054
BccI CCATC 6 cut(s) 15, 208, 239, 912, 1024, 1080
BcgI CGANNNNNNTGC 2 cut(s) 743, 777
BciVI GTATCC 1 cut(s) 1317
BcoDI GTCTC 2 cut(s) 377, 597
BfaI CTAG 5 cut(s) 276, 302, 429, 455, 702
BfuI GTATCC 1 cut(s) 1317
BglII AGATCT 2 cut(s) 325, 346
BlnI CCTAGG 1 cut(s) 275
BmeT110I CYCGRG 2 cut(s) 321, 342
BmiI GGNNCC 2 cut(s) 393, 1155
BmsI GCATC 3 cut(s) 703, 751, 1122
Bpu10I CCTNAGC 1 cut(s) 1270
BpuEI CTTGAG 4 cut(s) 348, 501, 791, 1065
BsaBI GATNNNNATC 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 7 cut(s) 32, 143, 275, 387, 816, 894, 918
BsaXI ACNNNNNCTCC 2 cut(s) 865, 895
Bsc4I CCNNNNNNNGG 2 cut(s) 656, 1004
Bse8I GATNNNNATC 1 cut(s) 249
BseDI CCNNGG 7 cut(s) 32, 143, 275, 387, 816, 894, 918
BseGI GGATG 3 cut(s) 26, 718, 766
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 2 cut(s) 656, 1004
BseRI GAGGAG 3 cut(s) 722, 770, 873
BseSI GKGCMC 1 cut(s) 396
BsgI GTGCAG 1 cut(s) 592
BshNI GGYRCC 1 cut(s) 391
BsiHKAI GWGCWC 4 cut(s) 167, 185, 944, 1054
BsiHKCI CYCGRG 2 cut(s) 321, 342
BslFI GGGAC 1 cut(s) 1251
BslI CCNNNNNNNGG 2 cut(s) 656, 1004
BsmAI GTCTC 2 cut(s) 377, 597
BsmFI GGGAC 1 cut(s) 1251
BsmI GAATGC 1 cut(s) 148
Bso31I GGTCTC 1 cut(s) 377
BsoBI CYCGRG 2 cut(s) 321, 342
Bsp1286I GDGCHC 5 cut(s) 167, 185, 396, 944, 1054
Bsp1407I TGTACA 1 cut(s) 553
Bsp143I GATC 7 cut(s) 4, 28, 325, 346, 774, 900, 969
Bsp19I CCATGG 2 cut(s) 387, 816
BspACI CCGC 3 cut(s) 92, 716, 764
BspHI TCATGA 3 cut(s) 226, 409, 907
BspLI GGNNCC 2 cut(s) 393, 1155
BspPI GGATC 4 cut(s) 12, 23, 895, 977
BspQI GCTCTTC 1 cut(s) 858
BspT107I GGYRCC 1 cut(s) 391
BspTNI GGTCTC 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 553
BssECI CCNNGG 7 cut(s) 32, 143, 275, 387, 816, 894, 918
BssMI GATC 7 cut(s) 4, 28, 325, 346, 774, 900, 969
BssT1I CCWWGG 5 cut(s) 275, 387, 816, 894, 918
Bst6I CTCTTC 3 cut(s) 819, 858, 1172
BstAUI TGTACA 1 cut(s) 553
BstC8I GCNNGC 5 cut(s) 417, 468, 489, 510, 1208
BstDEI CTNAG 2 cut(s) 642, 1270
BstDSI CCRYGG 3 cut(s) 143, 387, 816
BstEII GGTNACC 1 cut(s) 68
BstF5I GGATG 3 cut(s) 26, 718, 766
BstKTI GATC 7 cut(s) 7, 31, 328, 349, 777, 903, 972
BstMAI GTCTC 2 cut(s) 377, 597
BstMBI GATC 7 cut(s) 4, 28, 325, 346, 774, 900, 969
BstMWI GCNNNNNNNGC 2 cut(s) 497, 1151
BstNSI RCATGY 1 cut(s) 223
BstPI GGTNACC 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 396
BstX2I RGATCY 4 cut(s) 28, 325, 346, 900
BstYI RGATCY 4 cut(s) 28, 325, 346, 900
BsuI GTATCC 1 cut(s) 1317
BtgI CCRYGG 3 cut(s) 143, 387, 816
BtsCI GGATG 3 cut(s) 26, 718, 766
Cac8I GCNNGC 5 cut(s) 417, 468, 489, 510, 1208
CciI TCATGA 3 cut(s) 226, 409, 907
Csp6I GTAC 6 cut(s) 208, 239, 554, 626, 977, 1295
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 7 cut(s) 220, 227, 388, 410, 778, 817, 908
CviQI GTAC 6 cut(s) 208, 239, 554, 626, 977, 1295
DdeI CTNAG 2 cut(s) 642, 1270
DpnI GATC 7 cut(s) 6, 30, 327, 348, 776, 902, 971
DpnII GATC 7 cut(s) 4, 28, 325, 346, 774, 900, 969
Eam1104I CTCTTC 3 cut(s) 819, 858, 1172
EarI CTCTTC 3 cut(s) 819, 858, 1172
Eco130I CCWWGG 5 cut(s) 275, 387, 816, 894, 918
Eco31I GGTCTC 1 cut(s) 377
Eco32I GATATC 1 cut(s) 251
Eco88I CYCGRG 2 cut(s) 321, 342
Eco91I GGTNACC 1 cut(s) 68
EcoO65I GGTNACC 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 82
EcoRV GATATC 1 cut(s) 251
EcoT14I CCWWGG 5 cut(s) 275, 387, 816, 894, 918
ErhI CCWWGG 5 cut(s) 275, 387, 816, 894, 918
FaeI CATG 7 cut(s) 223, 230, 391, 413, 781, 820, 911
FalI AAGNNNNNCTT 4 cut(s) 510, 542, 1184, 1216
FaqI GGGAC 1 cut(s) 1251
FatI CATG 7 cut(s) 219, 226, 387, 409, 777, 816, 907
FauNDI CATATG 1 cut(s) 421
FokI GGATG 3 cut(s) 33, 725, 773
FspBI CTAG 5 cut(s) 276, 302, 429, 455, 702
Hin1II CATG 7 cut(s) 223, 230, 391, 413, 781, 820, 911
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 4 cut(s) 264, 468, 510, 644
HinfI GANTC 4 cut(s) 425, 677, 829, 1264
HphI GGTGA 5 cut(s) 62, 144, 610, 1039, 1054
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 4 cut(s) 33, 187, 616, 682
Hpy188III TCNNGA 8 cut(s) 227, 321, 342, 410, 443, 518, 908, 1082
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 7 cut(s) 447, 502, 650, 843, 996, 1129, 1135
HpyCH4IV ACGT 1 cut(s) 1256
HpyCH4V TGCA 9 cut(s) 114, 196, 466, 487, 508, 590, 609, 781, 1058
HpyF10VI GCNNNNNNNGC 2 cut(s) 497, 1151
HpyF3I CTNAG 2 cut(s) 642, 1270
HpySE526I ACGT 1 cut(s) 1256
Hsp92II CATG 7 cut(s) 223, 230, 391, 413, 781, 820, 911
Kzo9I GATC 7 cut(s) 4, 28, 325, 346, 774, 900, 969
LguI GCTCTTC 1 cut(s) 858
LmnI GCTCC 4 cut(s) 12, 766, 1049, 1159
LweI GCATC 3 cut(s) 703, 751, 1122
MaeI CTAG 5 cut(s) 276, 302, 429, 455, 702
MaeII ACGT 1 cut(s) 1256
MaeIII GTNAC 2 cut(s) 68, 845
MalI GATC 7 cut(s) 6, 30, 327, 348, 776, 902, 971
MboI GATC 7 cut(s) 4, 28, 325, 346, 774, 900, 969
MfeI CAATTG 3 cut(s) 461, 482, 1212
MflI RGATCY 4 cut(s) 28, 325, 346, 900
MhlI GDGCHC 5 cut(s) 167, 185, 396, 944, 1054
MlyI GAGTC 3 cut(s) 434, 838, 1273
MseI TTAA 3 cut(s) 954, 1001, 1188
MslI CAYNNNNRTG 1 cut(s) 537
MunI CAATTG 3 cut(s) 461, 482, 1212
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 497, 1151
NcoI CCATGG 2 cut(s) 387, 816
NdeI CATATG 1 cut(s) 421
NdeII GATC 7 cut(s) 4, 28, 325, 346, 774, 900, 969
NlaIII CATG 7 cut(s) 223, 230, 391, 413, 781, 820, 911
NlaIV GGNNCC 2 cut(s) 393, 1155
NmuCI GTSAC 2 cut(s) 68, 845
NspI RCATGY 1 cut(s) 223
PagI TCATGA 3 cut(s) 226, 409, 907
PciSI GCTCTTC 1 cut(s) 858
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 677
PflMI CCANNNNNTGG 1 cut(s) 1004
PleI GAGTC 3 cut(s) 433, 837, 1272
PpsI GAGTC 3 cut(s) 433, 837, 1272
PspEI GGTNACC 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 393, 1155
PsuI RGATCY 4 cut(s) 28, 325, 346, 900
RsaI GTAC 6 cut(s) 209, 240, 555, 627, 978, 1296
RsaNI GTAC 6 cut(s) 208, 239, 554, 626, 977, 1295
RseI CAYNNNNRTG 1 cut(s) 537
SapI GCTCTTC 1 cut(s) 858
SaqAI TTAA 3 cut(s) 954, 1001, 1188
Sau3AI GATC 7 cut(s) 4, 28, 325, 346, 774, 900, 969
SchI GAGTC 3 cut(s) 434, 838, 1273
SduI GDGCHC 5 cut(s) 167, 185, 396, 944, 1054
SfaNI GCATC 3 cut(s) 703, 751, 1122
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 5 cut(s) 363, 516, 770, 1080, 1298
SmoI CTYRAG 5 cut(s) 363, 516, 770, 1080, 1298
SsiI CCGC 3 cut(s) 92, 716, 764
SspI AATATT 2 cut(s) 632, 1221
SspMI CTAG 5 cut(s) 276, 302, 429, 455, 702
StyI CCWWGG 5 cut(s) 275, 387, 816, 894, 918
TaiI ACGT 1 cut(s) 1259
TaqI TCGA 3 cut(s) 502, 753, 807
TatI WGTACW 3 cut(s) 207, 553, 976
TfiI GAWTC 1 cut(s) 677
Tru1I TTAA 3 cut(s) 954, 1001, 1188
Tru9I TTAA 3 cut(s) 954, 1001, 1188
TseFI GTSAC 2 cut(s) 68, 845
Tsp45I GTSAC 2 cut(s) 68, 845
TspDTI ATGAA 8 cut(s) 276, 591, 669, 739, 787, 867, 1187, 1213
TspGWI ACGGA 2 cut(s) 132, 309
Van91I CCANNNNNTGG 1 cut(s) 1004
XapI RAATTY 4 cut(s) 52, 82, 284, 719
XceI RCATGY 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 275
XspI CTAG 5 cut(s) 276, 302, 429, 455, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.