RchiOBHm_Chr6g0281431

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000195
Physical Location & Seq
Forward (+)
44686312 .. 44690256
3945 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25241

Sequence Viewer

Length: 1128 bp
ATGGATCAATGGAACTATGGATGGGAAGACTCATGGGGATATGAGCAAGAAAGTCTATATGGTGGAGGCTATCAAGCTTATGAGCCTAGGAAGGAATTCGTTGAAGGACTACTAGCTCAATTGCAAGCCTCCCAATCTCTATTGCAAGCCTCCCAAGCTCAATTGCAAGCTTCTCAAGAGATGCTTATACATTCCAATGAGCAACTTAAGGCTAGTCTTGCACAAGAGCCACCCTTCACCATTTATGAGCATGAATCTTTCTTTGACCAAGTGGAGCCTATTTCAAGAGAAGAAGTGTATATCGAGCATCTTGAGCAAGAATCCTTTATGCAAGTTGAAAATGATGATAGTGATGTTGATGTACAAGAAAGTGAGCTTGGTTATGAAAGTTCCGATGCAAGTGGGGTGAGTGACTACACTTCGGAGGAATTGGTGCAATATTGGGAATCTAAGCTTCCTAATGGAGTGGAGATATTTGAAGATGATTCCGAAGAAGATGATGTCTTGTCTAGTGAGGAGGATGCGAAATTTGGAGTTATACACCATAATCCTTTGTTCATTAAGGAGGATGCGGAGCTCGAAGTCATACACCATAATCCCTTATTTGTTGAGGTTGATATTCCCATGGGGGATAAGAGTCCTTCAATACTTTGTGATGGTGAAGAAATTGAAGAGGTAAGGACTTTCTCTTCTCCCACATCCATGGAGATCCATCATGAGCTTCCCAAGGTGGAGAGTAGGACATTCAGCACTTACATTCTTAATGAGAGGATTGGGATCAAGGTACTTTTACCTCCCAATCCACCATTAAGTGGTCAATGTTTTTACAATGAGGTGATAGATTGGAAAGGAAATGGAGCAATTGCACTCACCCTTTCCCATCACTGTCAAGAGCTTCTATCACCTATTGTTCCTATGAGCATCATTTCTACACCACTTGAGAAGGAGAAGGCAAGGAGATTGATCCATAGTAGAAAAATAGAAAAGAATGGGAAGATTAAGAAGCTACACTTTTGGCCACCAATTGGAGTATTCTTATGTAGCTCTTGGTCTTGCCTCTATGATACATCAATGAGTCCCTTAGCCCCAAACAATAGGGTGGTCGTACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

375

Amino Acids

42.79

Weight (kDa)

4.46

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 812, 1025
AciI CCGC 1 cut(s) 572
AclWI GGATC 4 cut(s) 12, 703, 785, 958
AcoI YGGCCR 1 cut(s) 1016
AcsI RAATTY 2 cut(s) 95, 527
AfaI GTAC 3 cut(s) 363, 786, 1107
AfiI CCNNNNNNNGG 2 cut(s) 812, 1025
AflII CTTAAG 1 cut(s) 206
AgsI TTSAA 6 cut(s) 104, 285, 338, 479, 645, 671
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
Alw21I GWGCWC 1 cut(s) 579
AlwI GGATC 4 cut(s) 12, 703, 785, 958
AoxI GGCC 1 cut(s) 1016
ApoI RAATTY 2 cut(s) 95, 527
Asp700I GAANNNNTTC 1 cut(s) 95
AspA2I CCTAGG 1 cut(s) 86
AsuHPI GGTGA 6 cut(s) 229, 418, 671, 847, 862, 894
AvrII CCTAGG 1 cut(s) 86
BalI TGGCCA 1 cut(s) 1018
BanII GRGCYC 1 cut(s) 579
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 579
BccI CCATC 4 cut(s) 15, 650, 720, 888
BciVI GTATCC 1 cut(s) 1128
BfaI CTAG 4 cut(s) 87, 113, 213, 510
BfrI CTTAAG 1 cut(s) 206
BfuI GTATCC 1 cut(s) 1128
BlnI CCTAGG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 276
BmsI GCATC 6 cut(s) 171, 316, 385, 511, 559, 930
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 1081
BpuEI CTTGAG 3 cut(s) 159, 332, 959
BsaBI GATNNNNATC 1 cut(s) 776
BsaJI CCNNGG 4 cut(s) 86, 624, 702, 726
Bsc4I CCNNNNNNNGG 2 cut(s) 812, 1025
Bse8I GATNNNNATC 1 cut(s) 776
BseDI CCNNGG 4 cut(s) 86, 624, 702, 726
BseGI GGATG 4 cut(s) 26, 526, 574, 698
BseJI GATNNNNATC 1 cut(s) 776
BseLI CCNNNNNNNGG 2 cut(s) 812, 1025
BseRI GAGGAG 1 cut(s) 530
BshFI GGCC 1 cut(s) 1018
BsiHKAI GWGCWC 1 cut(s) 579
BslFI GGGAC 1 cut(s) 1062
BslI CCNNNNNNNGG 2 cut(s) 812, 1025
BsmFI GGGAC 1 cut(s) 1062
BsnI GGCC 1 cut(s) 1018
Bsp1286I GDGCHC 1 cut(s) 579
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 4 cut(s) 4, 708, 777, 963
Bsp19I CCATGG 2 cut(s) 624, 702
BspACI CCGC 1 cut(s) 572
BspANI GGCC 1 cut(s) 1018
BspHI TCATGA 1 cut(s) 715
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 4 cut(s) 12, 703, 785, 958
BspTI CTTAAG 1 cut(s) 206
BsrGI TGTACA 1 cut(s) 361
BssECI CCNNGG 4 cut(s) 86, 624, 702, 726
BssMI GATC 4 cut(s) 4, 708, 777, 963
BssT1I CCWWGG 4 cut(s) 86, 624, 702, 726
Bst4CI ACNGT 1 cut(s) 887
Bst6I CTCTTC 2 cut(s) 666, 694
BstAFI CTTAAG 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 126, 147, 168
BstDEI CTNAG 2 cut(s) 450, 1081
BstDSI CCRYGG 2 cut(s) 624, 702
BstF5I GGATG 4 cut(s) 26, 526, 574, 698
BstKTI GATC 4 cut(s) 7, 711, 780, 966
BstMBI GATC 4 cut(s) 4, 708, 777, 963
BstMWI GCNNNNNNNGC 3 cut(s) 155, 218, 313
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 708
BstXI CCANNNNNNTGG 1 cut(s) 703
BstYI RGATCY 1 cut(s) 708
BsuI GTATCC 1 cut(s) 1128
BsuRI GGCC 1 cut(s) 1018
BtgI CCRYGG 2 cut(s) 624, 702
BtsCI GGATG 4 cut(s) 26, 526, 574, 698
BtsIMutI CAGTG 1 cut(s) 883
Cac8I GCNNGC 3 cut(s) 126, 147, 168
CciI TCATGA 1 cut(s) 715
Csp6I GTAC 3 cut(s) 362, 785, 1106
CviAII CATG 5 cut(s) 33, 251, 625, 703, 716
CviQI GTAC 3 cut(s) 362, 785, 1106
DdeI CTNAG 2 cut(s) 450, 1081
DpnI GATC 4 cut(s) 6, 710, 779, 965
DpnII GATC 4 cut(s) 4, 708, 777, 963
EaeI YGGCCR 1 cut(s) 1016
Eam1104I CTCTTC 2 cut(s) 666, 694
EarI CTCTTC 2 cut(s) 666, 694
Ecl136II GAGCTC 1 cut(s) 577
Eco130I CCWWGG 4 cut(s) 86, 624, 702, 726
Eco24I GRGCYC 1 cut(s) 579
Eco53kI GAGCTC 1 cut(s) 577
EcoICRI GAGCTC 1 cut(s) 577
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 4 cut(s) 86, 624, 702, 726
EcoT38I GRGCYC 1 cut(s) 579
ErhI CCWWGG 4 cut(s) 86, 624, 702, 726
FaeI CATG 5 cut(s) 36, 254, 628, 706, 719
FalI AAGNNNNNCTT 4 cut(s) 168, 200, 995, 1027
FaqI GGGAC 1 cut(s) 1062
FatI CATG 5 cut(s) 32, 250, 624, 702, 715
FokI GGATG 4 cut(s) 33, 533, 581, 685
FriOI GRGCYC 1 cut(s) 579
FspBI CTAG 4 cut(s) 87, 113, 213, 510
HaeIII GGCC 1 cut(s) 1018
Hin1II CATG 5 cut(s) 36, 254, 628, 706, 719
HindIII AAGCTT 3 cut(s) 75, 168, 452
HinfI GANTC 7 cut(s) 29, 254, 320, 446, 485, 637, 1075
HphI GGTGA 6 cut(s) 229, 418, 671, 847, 862, 894
Hpy188I TCNGA 3 cut(s) 394, 424, 490
Hpy188III TCNNGA 5 cut(s) 176, 285, 311, 716, 890
HpyAV CCTTC 6 cut(s) 85, 98, 244, 651, 937, 943
HpyCH4III ACNGT 1 cut(s) 887
HpyCH4V TGCA 8 cut(s) 124, 145, 166, 221, 331, 398, 436, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 218, 313
HpyF3I CTNAG 2 cut(s) 450, 1081
Hsp92II CATG 5 cut(s) 36, 254, 628, 706, 719
Kzo9I GATC 4 cut(s) 4, 708, 777, 963
LmnI GCTCC 3 cut(s) 274, 574, 857
LweI GCATC 6 cut(s) 171, 316, 385, 511, 559, 930
MaeI CTAG 4 cut(s) 87, 113, 213, 510
MaeIII GTNAC 1 cut(s) 410
MalI GATC 4 cut(s) 6, 710, 779, 965
MboI GATC 4 cut(s) 4, 708, 777, 963
MboII GAAGA 9 cut(s) 38, 302, 491, 503, 506, 674, 681, 683, 1006
MfeI CAATTG 4 cut(s) 119, 161, 861, 1023
MflI RGATCY 1 cut(s) 708
MhlI GDGCHC 1 cut(s) 579
MlsI TGGCCA 1 cut(s) 1018
MluCI AATT 8 cut(s) 95, 119, 161, 428, 527, 666, 861, 1023
MluNI TGGCCA 1 cut(s) 1018
MlyI GAGTC 3 cut(s) 23, 646, 1084
Mox20I TGGCCA 1 cut(s) 1018
MroXI GAANNNNTTC 1 cut(s) 95
MscI TGGCCA 1 cut(s) 1018
MseI TTAA 5 cut(s) 207, 561, 762, 809, 999
MslI CAYNNNNRTG 2 cut(s) 195, 701
Msp20I TGGCCA 1 cut(s) 1018
MspCI CTTAAG 1 cut(s) 206
MunI CAATTG 4 cut(s) 119, 161, 861, 1023
MwoI GCNNNNNNNGC 3 cut(s) 155, 218, 313
NcoI CCATGG 2 cut(s) 624, 702
NdeII GATC 4 cut(s) 4, 708, 777, 963
NlaIII CATG 5 cut(s) 36, 254, 628, 706, 719
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 410
PagI TCATGA 1 cut(s) 715
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 4 cut(s) 254, 320, 446, 485
PflMI CCANNNNNTGG 2 cut(s) 812, 1025
PleI GAGTC 3 cut(s) 23, 645, 1083
PpsI GAGTC 3 cut(s) 23, 645, 1083
Psp124BI GAGCTC 1 cut(s) 579
PspN4I GGNNCC 1 cut(s) 276
PsuI RGATCY 1 cut(s) 708
RsaI GTAC 3 cut(s) 363, 786, 1107
RsaNI GTAC 3 cut(s) 362, 785, 1106
RseI CAYNNNNRTG 2 cut(s) 195, 701
SacI GAGCTC 1 cut(s) 579
SaqAI TTAA 5 cut(s) 207, 561, 762, 809, 999
Sau3AI GATC 4 cut(s) 4, 708, 777, 963
SchI GAGTC 3 cut(s) 23, 646, 1084
SduI GDGCHC 1 cut(s) 579
SfaNI GCATC 6 cut(s) 171, 316, 385, 511, 559, 930
SmiMI CAYNNNNRTG 2 cut(s) 195, 701
SmlI CTYRAG 5 cut(s) 174, 206, 311, 938, 1109
SmoI CTYRAG 5 cut(s) 174, 206, 311, 938, 1109
Sse9I AATT 8 cut(s) 95, 119, 161, 428, 527, 666, 861, 1023
SsiI CCGC 1 cut(s) 572
SspI AATATT 1 cut(s) 440
SspMI CTAG 4 cut(s) 87, 113, 213, 510
SstI GAGCTC 1 cut(s) 579
StyI CCWWGG 4 cut(s) 86, 624, 702, 726
TaaI ACNGT 1 cut(s) 887
TaqI TCGA 2 cut(s) 303, 579
TasI AATT 8 cut(s) 95, 119, 161, 428, 527, 666, 861, 1023
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 4 cut(s) 254, 320, 446, 485
Tru1I TTAA 5 cut(s) 207, 561, 762, 809, 999
Tru9I TTAA 5 cut(s) 207, 561, 762, 809, 999
TscAI CASTG 1 cut(s) 890
TseFI GTSAC 1 cut(s) 410
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 267, 399, 547
TspRI CASTG 1 cut(s) 890
Van91I CCANNNNNTGG 2 cut(s) 812, 1025
Vha464I CTTAAG 1 cut(s) 206
XapI RAATTY 2 cut(s) 95, 527
XmaJI CCTAGG 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 4 cut(s) 87, 113, 213, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.