Rroxscaffold_5G00350530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000195
Physical Location & Seq
Forward (+)
24651354 .. 24652233
880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350530.1

Sequence Viewer

Length: 789 bp
ATGAGCAACTTGAGTCTAGTCTTCAAGCAAGAGCCACCATTCACCATTTGTCATGAGCAAGATTCTTTCTTTGATCAAGTGGAGCCTATTTCAAGAGAAGGAGTATATTTTGAGCATCATGAGCAAGAGTTGCCTCTTCAAGATCGAGAGAGTGATGTTCATGTACTTGAAAGTGTGTTTGGTTATGGAAATTTTGAAGCAAAAGATGATAGCTTGTCTAGTGAGGAGGATGCGGAGCTTGAAGAGCTACACCATGATCCCTTAATCCTTGAGGCCGATATTCCCAAGGAGGAAGAGAGTCCTTTAATGCATTGTAATGGTAATGAAGAAATTGAAGAGTCATTGACTTTCTCTCCTCCCACATCCACGGAGATCCATCATGTGCTTCCCAAGGTAGAGAGTAGAACATTGAGCACTTATGTTCTTAGTGAGAAGATTGAGATTAAGGTACTTTTACCTCTCAATCCACCATTAAGTGGTCAATGTTTCTACAATGAAGTGATGGATTGGAAAGGAAGTGGAGCACTTGCACTCACTATTTCCCATCACTCTCAAGAGTTTCTACCACCTATTGTTCCTAAGAGCATTATTTCTACATCACTTGAGAAGGAGAATGCAAGGTTGGCTTCTAGAAGAAAAATAGAGAAGAGGAGGAAGATTAAGAAGCTACACTTTTGGTCACCCATTGGAATCTTTATGGATAGCTCTTGGTCTTGTCTCTATGACATGTTAAGGAGTCCCTTAGCCCCTAACAATAGGGTGGTCGCGCTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

30.04

Weight (kDa)

4.96

Isoelectric Point (pI)

72.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 476
AccII CGCG 1 cut(s) 767
AciI CCGC 1 cut(s) 233
AclWI GGATC 2 cut(s) 251, 367
AcsI RAATTY 1 cut(s) 190
AfaI GTAC 2 cut(s) 165, 450
AfiI CCNNNNNNNGG 1 cut(s) 476
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 7 cut(s) 25, 93, 140, 170, 197, 242, 335
AjuI GAANNNNNNNTTGG 4 cut(s) 162, 194, 605, 637
AluBI AGCT 5 cut(s) 213, 238, 247, 667, 705
AluI AGCT 5 cut(s) 213, 238, 247, 667, 705
Alw21I GWGCWC 2 cut(s) 416, 526
Alw26I GTCTC 1 cut(s) 722
AlwI GGATC 2 cut(s) 251, 367
AoxI GGCC 1 cut(s) 273
ApoI RAATTY 1 cut(s) 190
AspLEI GCGC 1 cut(s) 769
AsuHPI GGTGA 2 cut(s) 34, 672
BbsI GAAGAC 1 cut(s) 13
Bbv12I GWGCWC 2 cut(s) 416, 526
BccI CCATC 3 cut(s) 384, 496, 552
BciVI GTATCC 1 cut(s) 789
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 722
BfaI CTAG 3 cut(s) 17, 219, 630
BfuI GTATCC 1 cut(s) 789
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 2 cut(s) 124, 220
BpiI GAAGAC 1 cut(s) 13
Bpu10I CCTNAGC 1 cut(s) 742
BpuEI CTTGAG 4 cut(s) 31, 290, 537, 623
BsaJI CCNNGG 3 cut(s) 285, 366, 390
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bsc4I CCNNNNNNNGG 1 cut(s) 476
BseDI CCNNGG 3 cut(s) 285, 366, 390
BseGI GGATG 2 cut(s) 235, 362
BseLI CCNNNNNNNGG 1 cut(s) 476
BseRI GAGGAG 3 cut(s) 239, 345, 664
Bsh1236I CGCG 1 cut(s) 767
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 2 cut(s) 416, 526
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 1 cut(s) 722
BsmFI GGGAC 1 cut(s) 723
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 1 cut(s) 275
Bsp1286I GDGCHC 2 cut(s) 416, 526
Bsp143I GATC 4 cut(s) 73, 142, 256, 372
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 275
BspFNI CGCG 1 cut(s) 767
BspHI TCATGA 2 cut(s) 52, 118
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 2 cut(s) 251, 367
BspQI GCTCTTC 1 cut(s) 237
BssECI CCNNGG 3 cut(s) 285, 366, 390
BssMI GATC 4 cut(s) 73, 142, 256, 372
BssT1I CCWWGG 2 cut(s) 285, 390
Bst6I CTCTTC 5 cut(s) 141, 237, 288, 330, 641
BstAPI GCANNNNNTGC 1 cut(s) 130
BstDEI CTNAG 3 cut(s) 425, 579, 742
BstDSI CCRYGG 1 cut(s) 366
BstEII GGTNACC 1 cut(s) 678
BstF5I GGATG 2 cut(s) 235, 362
BstFNI CGCG 1 cut(s) 767
BstHHI GCGC 1 cut(s) 769
BstKTI GATC 4 cut(s) 76, 145, 259, 375
BstMAI GTCTC 1 cut(s) 722
BstMBI GATC 4 cut(s) 73, 142, 256, 372
BstMWI GCNNNNNNNGC 4 cut(s) 121, 130, 244, 623
BstNSI RCATGY 1 cut(s) 730
BstPI GGTNACC 1 cut(s) 678
BstUI CGCG 1 cut(s) 767
BstV2I GAAGAC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuI GTATCC 1 cut(s) 789
BsuRI GGCC 1 cut(s) 275
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 2 cut(s) 235, 362
CciI TCATGA 2 cut(s) 52, 118
CfoI GCGC 1 cut(s) 769
Csp6I GTAC 2 cut(s) 164, 449
CviAII CATG 6 cut(s) 53, 119, 161, 254, 380, 727
CviQI GTAC 2 cut(s) 164, 449
DdeI CTNAG 3 cut(s) 425, 579, 742
DpnI GATC 4 cut(s) 75, 144, 258, 374
DpnII GATC 4 cut(s) 73, 142, 256, 372
Eam1104I CTCTTC 5 cut(s) 141, 237, 288, 330, 641
EarI CTCTTC 5 cut(s) 141, 237, 288, 330, 641
Eco130I CCWWGG 2 cut(s) 285, 390
Eco91I GGTNACC 1 cut(s) 678
EcoO65I GGTNACC 1 cut(s) 678
EcoT14I CCWWGG 2 cut(s) 285, 390
EcoT22I ATGCAT 1 cut(s) 312
ErhI CCWWGG 2 cut(s) 285, 390
FaeI CATG 6 cut(s) 56, 122, 164, 257, 383, 730
FalI AAGNNNNNCTT 4 cut(s) 610, 642, 656, 688
FaqI GGGAC 1 cut(s) 723
FatI CATG 6 cut(s) 52, 118, 160, 253, 379, 726
FbaI TGATCA 1 cut(s) 73
FokI GGATG 2 cut(s) 242, 349
FspBI CTAG 3 cut(s) 17, 219, 630
GlaI GCGC 1 cut(s) 768
HaeIII GGCC 1 cut(s) 275
HhaI GCGC 1 cut(s) 769
Hin1II CATG 6 cut(s) 56, 122, 164, 257, 383, 730
Hin6I GCGC 1 cut(s) 767
HinP1I GCGC 1 cut(s) 767
HinfI GANTC 6 cut(s) 13, 62, 298, 338, 690, 736
HphI GGTGA 2 cut(s) 34, 672
Hpy188III TCNNGA 7 cut(s) 53, 93, 119, 140, 146, 554, 630
HpyAV CCTTC 2 cut(s) 92, 601
HpyCH4V TGCA 3 cut(s) 310, 530, 617
HpyF10VI GCNNNNNNNGC 4 cut(s) 121, 130, 244, 623
HpyF3I CTNAG 3 cut(s) 425, 579, 742
Hsp92II CATG 6 cut(s) 56, 122, 164, 257, 383, 730
HspAI GCGC 1 cut(s) 767
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 4 cut(s) 73, 142, 256, 372
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 3 cut(s) 82, 235, 521
LweI GCATC 2 cut(s) 124, 220
MaeI CTAG 3 cut(s) 17, 219, 630
MaeIII GTNAC 1 cut(s) 678
MalI GATC 4 cut(s) 75, 144, 258, 374
MboI GATC 4 cut(s) 73, 142, 256, 372
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 416, 526
MluCI AATT 2 cut(s) 190, 330
MlyI GAGTC 4 cut(s) 22, 307, 347, 745
MnlI CCTC 9 cut(s) 144, 217, 220, 265, 283, 366, 468, 642, 645
Mph1103I ATGCAT 1 cut(s) 312
MseI TTAA 6 cut(s) 263, 305, 444, 473, 660, 731
MslI CAYNNNNRTG 1 cut(s) 315
Mva1269I GAATGC 1 cut(s) 619
MvnI CGCG 1 cut(s) 767
MwoI GCNNNNNNNGC 4 cut(s) 121, 130, 244, 623
NdeII GATC 4 cut(s) 73, 142, 256, 372
NlaIII CATG 6 cut(s) 56, 122, 164, 257, 383, 730
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 678
NsiI ATGCAT 1 cut(s) 312
NspI RCATGY 1 cut(s) 730
PagI TCATGA 2 cut(s) 52, 118
PciI ACATGT 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 237
PctI GAATGC 1 cut(s) 619
PfeI GAWTC 2 cut(s) 62, 690
PflMI CCANNNNNTGG 1 cut(s) 476
PleI GAGTC 4 cut(s) 21, 306, 346, 744
PpsI GAGTC 4 cut(s) 21, 306, 346, 744
PscI ACATGT 1 cut(s) 726
PspEI GGTNACC 1 cut(s) 678
PspN4I GGNNCC 1 cut(s) 84
PsuI RGATCY 1 cut(s) 372
RsaI GTAC 2 cut(s) 165, 450
RsaNI GTAC 2 cut(s) 164, 449
RseI CAYNNNNRTG 1 cut(s) 315
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 6 cut(s) 263, 305, 444, 473, 660, 731
Sau3AI GATC 4 cut(s) 73, 142, 256, 372
SchI GAGTC 4 cut(s) 22, 307, 347, 745
SduI GDGCHC 2 cut(s) 416, 526
SfaNI GCATC 2 cut(s) 124, 220
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 5 cut(s) 10, 269, 552, 602, 770
SmoI CTYRAG 5 cut(s) 10, 269, 552, 602, 770
Sse9I AATT 2 cut(s) 190, 330
SsiI CCGC 1 cut(s) 233
SspMI CTAG 3 cut(s) 17, 219, 630
StyI CCWWGG 2 cut(s) 285, 390
TaqI TCGA 1 cut(s) 145
TasI AATT 2 cut(s) 190, 330
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 2 cut(s) 62, 690
Tru1I TTAA 6 cut(s) 263, 305, 444, 473, 660, 731
Tru9I TTAA 6 cut(s) 263, 305, 444, 473, 660, 731
TseFI GTSAC 1 cut(s) 678
Tsp45I GTSAC 1 cut(s) 678
TspDTI ATGAA 3 cut(s) 149, 339, 510
TspGWI ACGGA 1 cut(s) 383
Van91I CCANNNNNTGG 1 cut(s) 476
XapI RAATTY 1 cut(s) 190
XbaI TCTAGA 1 cut(s) 629
XceI RCATGY 1 cut(s) 730
XspI CTAG 3 cut(s) 17, 219, 630
Zsp2I ATGCAT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.