Rmu_sc0000229.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000229.1
OG0000195
Physical Location & Seq
Forward (+)
26340 .. 27539
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000229.1_g000006.1.cds

Sequence Viewer

Length: 1200 bp
atggatcaatggaactatggaagggaagacccgtggagatatgagcaagaaagtttctatggtggaggtcaccaagagtggaattctcatgcggggggttctatgtcctcttgcaatgaaatttgtgctttgtgtaattctccttggcattcaccttttgagtgctctttgagatttgagtgcccggattttatgcaagagtgtgagtacaagatgggcatgtatcaagagacatttatacccaatgcatatccacaagaagcttatgagcctagtaaggaagttgttgacggactactagctcaattgcacgcctcccaagctccattacaagcctctcaagttagtatttcacaagagaccatggtttccgaagcatatcctcatgagcaaccgtatgagtctaggaagccttctcttgaagaattgctagctcaattgcaagcttcccaagcccaattgcaagcctcacaagctcaattgcaagcttctcaagaaatacttatacataccaatgagcaacttgagactagtcttgcacaagagccacccttcaccatttatgagcatgaatctttctttgaccaagtgcagcctatttcaagagaagaagtgcatatcgagcatcttgagcaagaatcctttatgcaagttgaaaatgatgatagtgatgttgatgtacaagaaattgaggttggttatgaaagtttcaatgcaagtggggtgagagactacacttcggaggaaccggtgcaatattggaaatctaatcttcacaatgaagaggaggtatatgaagttgattccgaagaagaggatagcttgtctagtgaggaagatgtggagcttgaagacttacaccatgatcccttaatcgttgaggtcgatattcccaactacaatgaggtgatagattggaaaggaagtgaacctcttgcactcaacctttcccatcacttgcaagagcttctaccacctattgtttgtaagagcattatttctataccacttgagaaggagaaggcaagtatattggctcctagaagaaaaattgagaagaagaggaaaattaagaagctacacttttgcttgccatttggaatattcataagtagttcttggtcttgcctctatgatacatcaaggagtcctttagccccaaacaatagggtggtcgtacttgagaagtatccaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

399

Amino Acids

45.94

Weight (kDa)

4.46

Isoelectric Point (pI)

71.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AclWI GGATC 2 cut(s) 12, 860
AcsI RAATTY 2 cut(s) 82, 120
AfaI GTAC 3 cut(s) 209, 681, 1179
AgeI ACCGGT 1 cut(s) 748
AgsI TTSAA 5 cut(s) 422, 603, 656, 712, 851
AhlI ACTAGT 1 cut(s) 530
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 4 cut(s) 224, 353, 521, 723
AlwI GGATC 2 cut(s) 12, 860
ApeKI GCWGC 1 cut(s) 592
ApoI RAATTY 2 cut(s) 82, 120
AsiGI ACCGGT 1 cut(s) 748
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 5 cut(s) 62, 144, 547, 736, 919
AsuNHI GCTAGC 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 185
BbsI GAAGAC 2 cut(s) 33, 858
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 604
BccI CCATC 2 cut(s) 208, 960
BciVI GTATCC 1 cut(s) 1200
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 4 cut(s) 224, 353, 521, 723
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 7 cut(s) 273, 299, 405, 431, 531, 828, 1041
BfuI GTATCC 1 cut(s) 1200
BisI GCNGC 1 cut(s) 593
BlsI GCNGC 1 cut(s) 594
Bme1390I CCNGG 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 747, 1038
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 634
BmtI GCTAGC 1 cut(s) 434
BpiI GAAGAC 2 cut(s) 33, 858
BpuEI CTTGAG 5 cut(s) 324, 477, 545, 650, 1031
BpuMI CCSGG 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 32, 143, 363
BsaWI WCCGGW 1 cut(s) 748
Bse118I RCCGGY 1 cut(s) 748
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 3 cut(s) 32, 143, 363
BseMI GCAATG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 800
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 1 cut(s) 604
BsgI GTGCAG 1 cut(s) 611
BshTI ACCGGT 1 cut(s) 748
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 2 cut(s) 185, 749
BsmAI GTCTC 4 cut(s) 224, 353, 521, 723
BsmI GAATGC 1 cut(s) 148
Bso31I GGTCTC 1 cut(s) 353
Bsp1286I GDGCHC 2 cut(s) 167, 185
Bsp1407I TGTACA 1 cut(s) 679
Bsp143I GATC 2 cut(s) 4, 865
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 1 cut(s) 92
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 2 cut(s) 747, 1038
BspOI GCTAGC 1 cut(s) 434
BspPI GGATC 2 cut(s) 12, 860
BspTNI GGTCTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 748
BsrGI TGTACA 1 cut(s) 679
BssAI RCCGGY 1 cut(s) 748
BssECI CCNNGG 3 cut(s) 32, 143, 363
BssMI GATC 2 cut(s) 4, 865
BssT1I CCWWGG 2 cut(s) 143, 363
Bst4CI ACNGT 1 cut(s) 396
Bst6I CTCTTC 3 cut(s) 777, 807, 1055
BstAUI TGTACA 1 cut(s) 679
BstC8I GCNNGC 6 cut(s) 312, 432, 444, 465, 486, 1091
BstDSI CCRYGG 2 cut(s) 32, 363
BstEII GGTNACC 1 cut(s) 68
BstKTI GATC 2 cut(s) 7, 868
BstMAI GTCTC 4 cut(s) 224, 353, 521, 723
BstMBI GATC 2 cut(s) 4, 865
BstMWI GCNNNNNNNGC 5 cut(s) 320, 452, 473, 622, 631
BstNSI RCATGY 1 cut(s) 223
BstPI GGTNACC 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 604
BstV2I GAAGAC 2 cut(s) 33, 858
BsuI GTATCC 1 cut(s) 1200
BtgI CCRYGG 2 cut(s) 32, 363
Cac8I GCNNGC 6 cut(s) 312, 432, 444, 465, 486, 1091
CciI TCATGA 1 cut(s) 385
Cfr10I RCCGGY 1 cut(s) 748
Csp6I GTAC 3 cut(s) 208, 680, 1178
CspAI ACCGGT 1 cut(s) 748
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviAII CATG 6 cut(s) 89, 220, 364, 386, 569, 863
CviQI GTAC 3 cut(s) 208, 680, 1178
DpnI GATC 2 cut(s) 6, 867
DpnII GATC 2 cut(s) 4, 865
Eam1104I CTCTTC 3 cut(s) 777, 807, 1055
EarI CTCTTC 3 cut(s) 777, 807, 1055
Eco130I CCWWGG 2 cut(s) 143, 363
Eco31I GGTCTC 1 cut(s) 353
Eco91I GGTNACC 1 cut(s) 68
EcoO65I GGTNACC 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 143, 363
EcoT22I ATGCAT 1 cut(s) 250
ErhI CCWWGG 2 cut(s) 143, 363
FaeI CATG 6 cut(s) 92, 223, 367, 389, 572, 866
FalI AAGNNNNNCTT 8 cut(s) 486, 518, 1067, 1099, 1102, 1134, 1135, 1167
FatI CATG 6 cut(s) 88, 219, 363, 385, 568, 862
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 593
Fsp4HI GCNGC 1 cut(s) 593
FspBI CTAG 7 cut(s) 273, 299, 405, 431, 531, 828, 1041
GluI GCNGC 1 cut(s) 593
HapII CCGG 2 cut(s) 185, 749
Hin1II CATG 6 cut(s) 92, 223, 367, 389, 572, 866
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 3 cut(s) 261, 444, 486
HinfI GANTC 5 cut(s) 401, 572, 638, 803, 1147
HpaII CCGG 2 cut(s) 185, 749
HphI GGTGA 5 cut(s) 62, 144, 547, 736, 919
Hpy166II GTNNAC 2 cut(s) 289, 929
Hpy188I TCNGA 3 cut(s) 373, 742, 808
Hpy188III TCNNGA 6 cut(s) 227, 386, 419, 494, 603, 629
Hpy8I GTNNAC 2 cut(s) 289, 929
HpyAV CCTTC 5 cut(s) 15, 423, 562, 1009, 1015
HpyCH4III ACNGT 1 cut(s) 396
HpyF10VI GCNNNNNNNGC 5 cut(s) 320, 452, 473, 622, 631
Hsp92II CATG 6 cut(s) 92, 223, 367, 389, 572, 866
Kzo9I GATC 2 cut(s) 4, 865
LmnI GCTCC 3 cut(s) 328, 844, 1042
LpnPI CCDG 2 cut(s) 198, 762
Lsp1109I GCAGC 1 cut(s) 604
LweI GCATC 1 cut(s) 634
MaeI CTAG 7 cut(s) 273, 299, 405, 431, 531, 828, 1041
MaeIII GTNAC 1 cut(s) 68
MalI GATC 2 cut(s) 6, 867
MboI GATC 2 cut(s) 4, 865
MfeI CAATTG 4 cut(s) 305, 437, 458, 479
MhlI GDGCHC 2 cut(s) 167, 185
MlyI GAGTC 2 cut(s) 410, 1156
Mph1103I ATGCAT 1 cut(s) 250
MseI TTAA 2 cut(s) 872, 1071
MslI CAYNNNNRTG 1 cut(s) 513
MspI CCGG 2 cut(s) 185, 749
MspR9I CCNGG 1 cut(s) 185
MunI CAATTG 4 cut(s) 305, 437, 458, 479
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 5 cut(s) 320, 452, 473, 622, 631
NciI CCSGG 1 cut(s) 185
NcoI CCATGG 1 cut(s) 363
NdeII GATC 2 cut(s) 4, 865
NheI GCTAGC 1 cut(s) 430
NlaIII CATG 6 cut(s) 92, 223, 367, 389, 572, 866
NlaIV GGNNCC 2 cut(s) 747, 1038
NmuCI GTSAC 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 1 cut(s) 223
PagI TCATGA 1 cut(s) 385
PcsI WCGNNNNNNNCGW 1 cut(s) 882
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 3 cut(s) 572, 638, 803
PinAI ACCGGT 1 cut(s) 748
PkrI GCNGC 1 cut(s) 594
PleI GAGTC 2 cut(s) 409, 1155
PpsI GAGTC 2 cut(s) 409, 1155
PspEI GGTNACC 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 747, 1038
RsaI GTAC 3 cut(s) 209, 681, 1179
RsaNI GTAC 3 cut(s) 208, 680, 1178
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 2 cut(s) 872, 1071
SatI GCNGC 1 cut(s) 593
Sau3AI GATC 2 cut(s) 4, 865
SchI GAGTC 2 cut(s) 410, 1156
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 2 cut(s) 167, 185
SfaNI GCATC 1 cut(s) 634
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 6 cut(s) 339, 492, 524, 629, 1010, 1181
SmoI CTYRAG 6 cut(s) 339, 492, 524, 629, 1010, 1181
SpeI ACTAGT 1 cut(s) 530
SsiI CCGC 1 cut(s) 92
SspI AATATT 2 cut(s) 758, 1104
SspMI CTAG 7 cut(s) 273, 299, 405, 431, 531, 828, 1041
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 2 cut(s) 143, 363
TaaI ACNGT 1 cut(s) 396
TaqI TCGA 2 cut(s) 621, 885
TatI WGTACW 2 cut(s) 207, 679
TfiI GAWTC 3 cut(s) 572, 638, 803
Tru1I TTAA 2 cut(s) 872, 1071
Tru9I TTAA 2 cut(s) 872, 1071
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 592
Tsp45I GTSAC 1 cut(s) 68
TspDTI ATGAA 6 cut(s) 132, 585, 717, 795, 810, 1096
TspGWI ACGGA 1 cut(s) 306
XapI RAATTY 2 cut(s) 82, 120
XceI RCATGY 1 cut(s) 223
XspI CTAG 7 cut(s) 273, 299, 405, 431, 531, 828, 1041
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.