Rw5G028290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000195
Physical Location & Seq
Reverse (-)
42790850 .. 42791518
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G028290.1

Sequence Viewer

Length: 669 bp
ATGGATGAGATGATCCTAGGGGATATGAGCAACAAAGTTATAATGGTGAAGGCTATCAAGAGTGGAATCCCTATGCTGAGAGTCCTATGCCTTGTTTCAACCAACCTTGTGCTTTATGTAATTCTCCGTGGCACTCGATCACCTTTTGAATGCTCTTTGAGATTTGAGTTCCAGGATTTTATGCGAGAGTATGAGTTCAAGATGGGCATCTATCAAGAGACATTTCTACCCCAGGCATATCCACAAGAGCAAGCTTTTGAGCCTCGAAAGCCATCACTTGAACAACAACTAGCTCAATTGGAAGCCTCTAATGATCAATTGCAAGCCTCTCAAGCTCAATGTCTAGCTTCCCAAGCCCGATTGCATGCTAAATTGCAAGCCTTCAATGCTCAATTGCAACCTTCTCAAGAAATGACTTCACATTCCAATGAGCAACTTGATCCTAGTTTTGCACAAGAGCCACCCTTCACCATTTCTCATGAGCAAGAGTCTTTCTTTGACCAAGTGGAGCCTTCTTTAAGAGGAGTGTATTATGAGCATCATGAGCAAGAATTGCCTATTCAAGATCGAGAGAGTGATGTTCATGTACAAGAAAGTGTGCTTGGTTATGGAAATTTGGAAGCAAGTGGGTTGAGAGACTACACTTCGGAGGAACCGGTGCAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.55

Weight (kDa)

4.64

Isoelectric Point (pI)

59.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 41
AclWI GGATC 2 cut(s) 7, 434
AcsI RAATTY 1 cut(s) 613
AfaI GTAC 1 cut(s) 588
AgeI ACCGGT 1 cut(s) 655
AgsI TTSAA 6 cut(s) 99, 149, 199, 281, 385, 563
AjnI CCWGG 2 cut(s) 171, 231
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AluBI AGCT 4 cut(s) 254, 293, 335, 347
AluI AGCT 4 cut(s) 254, 293, 335, 347
Alw26I GTCTC 2 cut(s) 212, 630
AlwI GGATC 2 cut(s) 7, 434
ApoI RAATTY 1 cut(s) 613
AsiGI ACCGGT 1 cut(s) 655
AspA2I CCTAGG 1 cut(s) 16
AsuHPI GGTGA 3 cut(s) 58, 132, 460
AvrII CCTAGG 1 cut(s) 16
BccI CCATC 2 cut(s) 196, 280
BciT130I CCWGG 2 cut(s) 173, 233
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 212, 630
BfaI CTAG 4 cut(s) 17, 290, 344, 444
BlnI CCTAGG 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 173, 233
BmiI GGNNCC 2 cut(s) 510, 654
BmrFI CCNGG 2 cut(s) 173, 233
BmsI GCATC 2 cut(s) 216, 547
BpuEI CTTGAG 2 cut(s) 315, 390
BsaBI GATNNNNATC 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 16, 127, 231
BsaWI WCCGGW 1 cut(s) 655
Bse118I RCCGGY 1 cut(s) 655
Bse8I GATNNNNATC 1 cut(s) 206
BseBI CCWGG 2 cut(s) 173, 233
BseDI CCNNGG 3 cut(s) 16, 127, 231
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 206
BseMII CTCAG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 537
BshTI ACCGGT 1 cut(s) 655
BsiSI CCGG 1 cut(s) 656
BsmAI GTCTC 2 cut(s) 212, 630
BsmI GAATGC 1 cut(s) 155
Bsp1407I TGTACA 1 cut(s) 586
Bsp143I GATC 5 cut(s) 12, 137, 313, 439, 565
BspCNI CTCAG 1 cut(s) 69
BspHI TCATGA 2 cut(s) 478, 541
BspLI GGNNCC 2 cut(s) 510, 654
BspPI GGATC 2 cut(s) 7, 434
BsrFI RCCGGY 1 cut(s) 655
BsrGI TGTACA 1 cut(s) 586
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 3 cut(s) 16, 127, 231
BssMI GATC 5 cut(s) 12, 137, 313, 439, 565
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 2 cut(s) 173, 233
BstAPI GCANNNNNTGC 1 cut(s) 553
BstAUI TGTACA 1 cut(s) 586
BstC8I GCNNGC 4 cut(s) 252, 324, 366, 378
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 5 cut(s) 15, 140, 316, 442, 568
BstMAI GTCTC 2 cut(s) 212, 630
BstMBI GATC 5 cut(s) 12, 137, 313, 439, 565
BstMWI GCNNNNNNNGC 6 cut(s) 268, 332, 353, 386, 544, 553
BstNI CCWGG 2 cut(s) 173, 233
BstNSI RCATGY 1 cut(s) 368
BstSCI CCNGG 2 cut(s) 171, 231
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 4 cut(s) 252, 324, 366, 378
CciI TCATGA 2 cut(s) 478, 541
Cfr10I RCCGGY 1 cut(s) 655
Csp6I GTAC 1 cut(s) 587
CspAI ACCGGT 1 cut(s) 655
CviAII CATG 4 cut(s) 365, 479, 542, 584
CviQI GTAC 1 cut(s) 587
DdeI CTNAG 1 cut(s) 77
DpnI GATC 5 cut(s) 14, 139, 315, 441, 567
DpnII GATC 5 cut(s) 12, 137, 313, 439, 565
Eco130I CCWWGG 1 cut(s) 16
EcoRII CCWGG 2 cut(s) 171, 231
EcoT14I CCWWGG 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 4 cut(s) 368, 482, 545, 587
FatI CATG 4 cut(s) 364, 478, 541, 583
FbaI TGATCA 1 cut(s) 313
FokI GGATG 1 cut(s) 17
FspBI CTAG 4 cut(s) 17, 290, 344, 444
HapII CCGG 1 cut(s) 656
Hin1II CATG 4 cut(s) 368, 482, 545, 587
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 3 cut(s) 66, 81, 488
HpaII CCGG 1 cut(s) 656
HphI GGTGA 3 cut(s) 58, 132, 460
Hpy188I TCNGA 1 cut(s) 649
Hpy188III TCNNGA 8 cut(s) 58, 199, 215, 407, 479, 542, 563, 569
HpyAV CCTTC 5 cut(s) 43, 391, 411, 475, 522
HpyCH4V TGCA 6 cut(s) 322, 364, 376, 397, 452, 661
HpyF10VI GCNNNNNNNGC 6 cut(s) 268, 332, 353, 386, 544, 553
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 4 cut(s) 368, 482, 545, 587
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 5 cut(s) 12, 137, 313, 439, 565
LmnI GCTCC 1 cut(s) 508
LpnPI CCDG 4 cut(s) 158, 185, 218, 245
LweI GCATC 2 cut(s) 216, 547
MaeI CTAG 4 cut(s) 17, 290, 344, 444
MalI GATC 5 cut(s) 14, 139, 315, 441, 567
MboI GATC 5 cut(s) 12, 137, 313, 439, 565
MfeI CAATTG 3 cut(s) 296, 317, 392
MluCI AATT 7 cut(s) 120, 296, 317, 371, 392, 551, 613
MlyI GAGTC 2 cut(s) 90, 497
MnlI CCTC 5 cut(s) 273, 316, 337, 515, 643
MseI TTAA 1 cut(s) 518
MslI CAYNNNNRTG 1 cut(s) 426
MspI CCGG 1 cut(s) 656
MspR9I CCNGG 2 cut(s) 173, 233
MunI CAATTG 3 cut(s) 296, 317, 392
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 2 cut(s) 173, 233
MwoI GCNNNNNNNGC 6 cut(s) 268, 332, 353, 386, 544, 553
NdeII GATC 5 cut(s) 12, 137, 313, 439, 565
NlaIII CATG 4 cut(s) 368, 482, 545, 587
NlaIV GGNNCC 2 cut(s) 510, 654
NspI RCATGY 1 cut(s) 368
PaeI GCATGC 1 cut(s) 368
PagI TCATGA 2 cut(s) 478, 541
PctI GAATGC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 66
PfoI TCCNGGA 1 cut(s) 171
PinAI ACCGGT 1 cut(s) 655
PleI GAGTC 2 cut(s) 89, 496
PpsI GAGTC 2 cut(s) 89, 496
PsiI TTATAA 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 171, 231
PspGI CCWGG 2 cut(s) 171, 231
PspN4I GGNNCC 2 cut(s) 510, 654
RsaI GTAC 1 cut(s) 588
RsaNI GTAC 1 cut(s) 587
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 1 cut(s) 518
Sau3AI GATC 5 cut(s) 12, 137, 313, 439, 565
SchI GAGTC 2 cut(s) 90, 497
ScrFI CCNGG 2 cut(s) 173, 233
SetI ASST 7 cut(s) 108, 145, 256, 295, 337, 349, 403
SfaNI GCATC 2 cut(s) 216, 547
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 2 cut(s) 330, 405
SmoI CTYRAG 2 cut(s) 330, 405
SphI GCATGC 1 cut(s) 368
Sse9I AATT 7 cut(s) 120, 296, 317, 371, 392, 551, 613
SspI AATATT 1 cut(s) 665
SspMI CTAG 4 cut(s) 17, 290, 344, 444
StyD4I CCNGG 2 cut(s) 171, 231
StyI CCWWGG 1 cut(s) 16
TaqI TCGA 3 cut(s) 136, 265, 568
TasI AATT 7 cut(s) 120, 296, 317, 371, 392, 551, 613
TatI WGTACW 1 cut(s) 586
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TspDTI ATGAA 1 cut(s) 572
TspGWI ACGGA 1 cut(s) 116
XapI RAATTY 1 cut(s) 613
XceI RCATGY 1 cut(s) 368
XmaJI CCTAGG 1 cut(s) 16
XspI CTAG 4 cut(s) 17, 290, 344, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.