Rmu_sc0008479.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008479.1
OG0000195
Physical Location & Seq
Forward (+)
8267 .. 9208
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008479.1_g000003.1.cds

Sequence Viewer

Length: 942 bp
atgtatcaagagacatttgtgcccgacgcatatccacaaaatgaagctaatgagcctaggaaggaatttgttggaggactactggctcaattgcaagcctcccgagatcttttacaagcctctcaagctaaaatttcacaagagaccatgattcccgaagcatttcctcatgagaaagcgtatgagtctaggaagccttctcttgaagaattgctagctcaattgcaagcgtcccaagctcgattgcaagcttctcaagaaatacttatacataccaatgagcaacttgagactagtcttgcacaagagtcacccttcaccatttatgagcatgaatctttctttgaccaagtggagcctatttcaagagaagaagtgtatatcgagcatcttgagcaagagtcctttatgcaagttgaaaattatgatagtgatgttgatgtacaagaaagtgagcttgattatgaaagtttcaatgcaagtgaggtgagagactacacttcggaggaatgggtgcaatattggaaatctaagtttccaaatggaggggagatattatttgaagatgattccgaagaagaggatgtcttgtctagtgaggaggatgtggagcttgaagttatacaccataatcccttgttcatcgaggaagatgcagagcttcaagtaatataccataatcctttattcattgaggtcgatgttcccaaggaggaagagagtccttcaatactttgtgatagtcaagaaattgaagagccaaggactttctctcctcctacatccaaggtgatccatcatgagtttcccaaggtggagagtagaacgttgagtacttatgtacttaatgagaagattgagcttaaggtacttttacctctcaatccaccatttagtgaccaatgtttctacaatgaggtgatggattggaaaggaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

36.44

Weight (kDa)

4.23

Isoelectric Point (pI)

73.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 827
AclWI GGATC 1 cut(s) 787
AcsI RAATTY 2 cut(s) 65, 132
AfaI GTAC 4 cut(s) 444, 835, 843, 870
AfiI CCNNNNNNNGG 1 cut(s) 545
AflII CTTAAG 1 cut(s) 863
AgsI TTSAA 9 cut(s) 206, 366, 419, 475, 563, 617, 665, 729, 755
AhlI ACTAGT 1 cut(s) 293
AluBI AGCT 9 cut(s) 47, 128, 218, 239, 251, 457, 613, 661, 862
AluI AGCT 9 cut(s) 47, 128, 218, 239, 251, 457, 613, 661, 862
Alw26I GTCTC 4 cut(s) 5, 137, 284, 486
AlwI GGATC 1 cut(s) 787
Ama87I CYCGRG 1 cut(s) 102
ApoI RAATTY 2 cut(s) 65, 132
Asp700I GAANNNNTTC 1 cut(s) 162
AspA2I CCTAGG 1 cut(s) 56
AsuHPI GGTGA 5 cut(s) 303, 310, 499, 802, 931
AsuNHI GCTAGC 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 102
AvrII CCTAGG 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 24
BccI CCATC 2 cut(s) 804, 916
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BcoDI GTCTC 4 cut(s) 5, 137, 284, 486
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 5 cut(s) 57, 189, 215, 294, 594
BfrI CTTAAG 1 cut(s) 863
BglII AGATCT 1 cut(s) 106
BlnI CCTAGG 1 cut(s) 56
BmcAI AGTACT 1 cut(s) 835
BmeT110I CYCGRG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 357
BmsI GCATC 2 cut(s) 397, 643
BmtI GCTAGC 1 cut(s) 218
BpuEI CTTGAG 4 cut(s) 108, 240, 308, 413
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 5 cut(s) 56, 708, 761, 786, 810
BsaXI ACNNNNNCTCC 2 cut(s) 757, 787
Bsc4I CCNNNNNNNGG 1 cut(s) 545
Bse1I ACTGG 1 cut(s) 87
BseDI CCNNGG 5 cut(s) 56, 708, 761, 786, 810
BseGI GGATG 3 cut(s) 589, 610, 782
BseLI CCNNNNNNNGG 1 cut(s) 545
BseNI ACTGG 1 cut(s) 87
BseRI GAGGAG 2 cut(s) 614, 765
BseSI GKGCMC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 545
BsmAI GTCTC 4 cut(s) 5, 137, 284, 486
BsmFI GGGAC 1 cut(s) 217
Bso31I GGTCTC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 24
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 2 cut(s) 106, 792
BspHI TCATGA 2 cut(s) 169, 799
BspLI GGNNCC 1 cut(s) 357
BspOI GCTAGC 1 cut(s) 218
BspPI GGATC 1 cut(s) 787
BspQI GCTCTTC 1 cut(s) 750
BspTI CTTAAG 1 cut(s) 863
BspTNI GGTCTC 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 442
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 5 cut(s) 56, 708, 761, 786, 810
BssMI GATC 2 cut(s) 106, 792
BssT1I CCWWGG 5 cut(s) 56, 708, 761, 786, 810
Bst6I CTCTTC 3 cut(s) 573, 711, 750
BstAFI CTTAAG 1 cut(s) 863
BstAUI TGTACA 1 cut(s) 442
BstC8I GCNNGC 4 cut(s) 96, 216, 228, 249
BstDEI CTNAG 1 cut(s) 531
BstF5I GGATG 3 cut(s) 589, 610, 782
BstKTI GATC 2 cut(s) 109, 795
BstMAI GTCTC 4 cut(s) 5, 137, 284, 486
BstMBI GATC 2 cut(s) 106, 792
BstMWI GCNNNNNNNGC 3 cut(s) 125, 236, 394
BstSLI GKGCMC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BtsCI GGATG 3 cut(s) 589, 610, 782
Cac8I GCNNGC 4 cut(s) 96, 216, 228, 249
CciI TCATGA 2 cut(s) 169, 799
CseI GACGC 2 cut(s) 35, 219
Csp6I GTAC 4 cut(s) 443, 834, 842, 869
CviAII CATG 4 cut(s) 148, 170, 332, 800
CviQI GTAC 4 cut(s) 443, 834, 842, 869
DdeI CTNAG 1 cut(s) 531
DpnI GATC 2 cut(s) 108, 794
DpnII GATC 2 cut(s) 106, 792
Eam1104I CTCTTC 3 cut(s) 573, 711, 750
EarI CTCTTC 3 cut(s) 573, 711, 750
Eco130I CCWWGG 5 cut(s) 56, 708, 761, 786, 810
Eco31I GGTCTC 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 102
EcoT14I CCWWGG 5 cut(s) 56, 708, 761, 786, 810
ErhI CCWWGG 5 cut(s) 56, 708, 761, 786, 810
FaeI CATG 4 cut(s) 151, 173, 335, 803
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FaqI GGGAC 1 cut(s) 217
FatI CATG 4 cut(s) 147, 169, 331, 799
FokI GGATG 3 cut(s) 596, 617, 769
FspBI CTAG 5 cut(s) 57, 189, 215, 294, 594
HgaI GACGC 2 cut(s) 35, 219
Hin1II CATG 4 cut(s) 151, 173, 335, 803
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 7 cut(s) 151, 185, 308, 335, 401, 569, 721
HphI GGTGA 5 cut(s) 303, 310, 499, 802, 931
Hpy188I TCNGA 2 cut(s) 505, 574
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 4 cut(s) 55, 207, 325, 735
HpyCH4IV ACGT 1 cut(s) 827
HpyCH4V TGCA 8 cut(s) 94, 226, 247, 302, 412, 479, 517, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 236, 394
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 1 cut(s) 827
Hsp92II CATG 4 cut(s) 151, 173, 335, 803
Kzo9I GATC 2 cut(s) 106, 792
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 2 cut(s) 355, 610
LpnPI CCDG 1 cut(s) 68
LweI GCATC 2 cut(s) 397, 643
MaeI CTAG 5 cut(s) 57, 189, 215, 294, 594
MaeII ACGT 1 cut(s) 827
MaeIII GTNAC 2 cut(s) 309, 896
MalI GATC 2 cut(s) 108, 794
MboI GATC 2 cut(s) 106, 792
MboII GAAGA 9 cut(s) 218, 383, 575, 587, 590, 662, 728, 767, 865
MfeI CAATTG 2 cut(s) 89, 221
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 7 cut(s) 65, 89, 132, 209, 221, 421, 750
MlyI GAGTC 4 cut(s) 194, 317, 410, 730
MmeI TCCRAC 1 cut(s) 52
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 2 cut(s) 846, 864
MslI CAYNNNNRTG 1 cut(s) 276
MspCI CTTAAG 1 cut(s) 863
MunI CAATTG 2 cut(s) 89, 221
MwoI GCNNNNNNNGC 3 cut(s) 125, 236, 394
NdeII GATC 2 cut(s) 106, 792
NheI GCTAGC 1 cut(s) 214
NlaIII CATG 4 cut(s) 151, 173, 335, 803
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 2 cut(s) 309, 896
PagI TCATGA 2 cut(s) 169, 799
PciSI GCTCTTC 1 cut(s) 750
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 3 cut(s) 151, 335, 569
PleI GAGTC 4 cut(s) 193, 316, 409, 729
PpsI GAGTC 4 cut(s) 193, 316, 409, 729
Psp1406I AACGTT 1 cut(s) 827
PspN4I GGNNCC 1 cut(s) 357
PsrI GAACNNNNNNTAC 2 cut(s) 817, 849
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 4 cut(s) 444, 835, 843, 870
RsaNI GTAC 4 cut(s) 443, 834, 842, 869
RseI CAYNNNNRTG 1 cut(s) 276
SapI GCTCTTC 1 cut(s) 750
SaqAI TTAA 2 cut(s) 846, 864
Sau3AI GATC 2 cut(s) 106, 792
ScaI AGTACT 1 cut(s) 835
SchI GAGTC 4 cut(s) 194, 317, 410, 730
SduI GDGCHC 1 cut(s) 24
SfaNI GCATC 2 cut(s) 397, 643
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 5 cut(s) 123, 255, 287, 392, 863
SmoI CTYRAG 5 cut(s) 123, 255, 287, 392, 863
SpeI ACTAGT 1 cut(s) 293
Sse9I AATT 7 cut(s) 65, 89, 132, 209, 221, 421, 750
SspI AATATT 1 cut(s) 521
SspMI CTAG 5 cut(s) 57, 189, 215, 294, 594
StyI CCWWGG 5 cut(s) 56, 708, 761, 786, 810
TaiI ACGT 1 cut(s) 830
TaqI TCGA 4 cut(s) 241, 384, 645, 699
TasI AATT 7 cut(s) 65, 89, 132, 209, 221, 421, 750
TatI WGTACW 3 cut(s) 442, 833, 841
TfiI GAWTC 3 cut(s) 151, 335, 569
Tru1I TTAA 2 cut(s) 846, 864
Tru9I TTAA 2 cut(s) 846, 864
TseFI GTSAC 2 cut(s) 309, 896
Tsp45I GTSAC 2 cut(s) 309, 896
TspDTI ATGAA 5 cut(s) 57, 348, 480, 631, 679
Vha464I CTTAAG 1 cut(s) 863
XapI RAATTY 2 cut(s) 65, 132
XmaJI CCTAGG 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 5 cut(s) 57, 189, 215, 294, 594
ZrmI AGTACT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.