Rmu_sc0003033.1_g000041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003033.1
OG0000195
Physical Location & Seq
Forward (+)
171660 .. 173030
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003033.1_g000041.1.cds

Sequence Viewer

Length: 1371 bp
atgaatcagtggagttatggatgggaagatccgaggggatatgagcaagaaaatttctatggtggatgtcatcaagagtggaattctcatgcggtgggttctatgtcttcttgcaatgaaacttgtgctttgtgtaatttttcatggcattcacattttgagtgctctatgagatttgaatgcccaaattttatgcaagagtgtgagtacaagatgggcatgtatcaagagacatttgtacccgatgcatattcgcaagatgaaccttatgagcctaggaagaaattcgttgaaggactactagctcaattgcaagcttcccgagatctattacaagcctctcaagctagaatttcacaagataccatagttcccgaagcatatcctcatgagcaagtgtatgagtctaggaggccttctcttgaagaatttctagctcaattgcaagcatcccaagctcgattgcaagcttctcaagaaatgcttatacattccaatgagcaacttgaggcgagtcttgcagaagagccactcttcaccaattatgagcatgaatcttcctttgaccaagtggaacctatttcaagagaagaggtacatatcaagcatcttgagcaagagtcatttatgcaagctgaagatgattatagtgatgttgatgtacaagaaagtgagcttgattatgaaattttcaatgcaagtggggtgagagactacacttcggaggaatgggtacaatattggaaatctaagcttccaaatgaaggggagatacttgaagataattccgaagagaaggatgacttgtctagtgaggaggatacagagtttgaagtcatacaccataatcccttattcattgaggtagatattcccatggaggaagagagttcttcaatactttgtgatgaggaagaaattgaagagccaaggactttctcgcctcccaaatccatggagatccatcatgagcttcccaaggtggagagtagaacattgagcacttatgtttttaatgagaggattgggatcaaggtacttttacctcccaatccacaattaagtggtcaatgtttctacaatgagatgatggattggaaaggaaaacttgcactcaacccttcccgtcacactcaagagcttctaccacatattattcctatgagcatcatttctacaccacttgagaaggagaaggcaaggatagctcctagaagaaaaattgagaagaagaggaagattaagaagctacacttttattcaccaattggattattcatggacagctcttggtcttgcctctatgacacatcgaggagtcccttagccccaaacaatagggtggtcgtacttgagaagtatccaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

456

Amino Acids

53.29

Weight (kDa)

4.66

Isoelectric Point (pI)

67.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AclWI GGATC 3 cut(s) 23, 955, 1037
AcsI RAATTY 7 cut(s) 52, 82, 187, 284, 351, 428, 687
AcuI CTGAAG 1 cut(s) 657
AfaI GTAC 7 cut(s) 209, 240, 597, 663, 735, 1038, 1350
AfiI CCNNNNNNNGG 1 cut(s) 764
AgsI TTSAA 9 cut(s) 179, 293, 425, 585, 694, 779, 833, 897, 923
Alw21I GWGCWC 2 cut(s) 167, 1004
Alw26I GTCTC 2 cut(s) 224, 705
AlwI GGATC 3 cut(s) 23, 955, 1037
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 1 cut(s) 413
ApoI RAATTY 7 cut(s) 52, 82, 187, 284, 351, 428, 687
Asp700I GAANNNNTTC 2 cut(s) 284, 429
AspA2I CCTAGG 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 529, 718, 1254
AvaI CYCGRG 1 cut(s) 321
AvrII CCTAGG 1 cut(s) 275
BaeI ACNNNNGTAYC 4 cut(s) 222, 255, 354, 387
BarI GAAGNNNNNNTAC 2 cut(s) 756, 788
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 167, 1004
BccI CCATC 4 cut(s) 15, 208, 972, 1084
BciVI GTATCC 2 cut(s) 814, 1371
BcoDI GTCTC 2 cut(s) 224, 705
BfaI CTAG 7 cut(s) 276, 302, 348, 408, 434, 810, 1212
BfuI GTATCC 2 cut(s) 814, 1371
BglII AGATCT 1 cut(s) 325
BlnI CCTAGG 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 576
BmsI GCATC 4 cut(s) 235, 458, 616, 1176
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 403, 435
Bpu10I CCTNAGC 1 cut(s) 1324
BpuEI CTTGAG 6 cut(s) 327, 459, 527, 632, 1119, 1205
BsaBI GATNNNNATC 1 cut(s) 1028
BsaJI CCNNGG 6 cut(s) 32, 275, 876, 929, 954, 978
Bsc4I CCNNNNNNNGG 1 cut(s) 764
Bse3DI GCAATG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 1028
BseDI CCNNGG 6 cut(s) 32, 275, 876, 929, 954, 978
BseGI GGATG 4 cut(s) 26, 71, 449, 805
BseJI GATNNNNATC 1 cut(s) 1028
BseLI CCNNNNNNNGG 1 cut(s) 764
BseMI GCAATG 1 cut(s) 121
BseRI GAGGAG 2 cut(s) 830, 1330
BshFI GGCC 1 cut(s) 415
BsiHKAI GWGCWC 2 cut(s) 167, 1004
BsiHKCI CYCGRG 1 cut(s) 321
BslFI GGGAC 1 cut(s) 1305
BslI CCNNNNNNNGG 1 cut(s) 764
BsmAI GTCTC 2 cut(s) 224, 705
BsmFI GGGAC 1 cut(s) 1305
BsmI GAATGC 2 cut(s) 148, 185
BsnI GGCC 1 cut(s) 415
BsoBI CYCGRG 1 cut(s) 321
Bsp1286I GDGCHC 2 cut(s) 167, 1004
Bsp1407I TGTACA 1 cut(s) 661
Bsp143I GATC 4 cut(s) 28, 325, 960, 1029
Bsp19I CCATGG 2 cut(s) 876, 954
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 415
BspHI TCATGA 2 cut(s) 388, 967
BspLI GGNNCC 1 cut(s) 576
BspPI GGATC 3 cut(s) 23, 955, 1037
BspQI GCTCTTC 2 cut(s) 519, 918
BsrDI GCAATG 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 661
BssECI CCNNGG 6 cut(s) 32, 275, 876, 929, 954, 978
BssMI GATC 4 cut(s) 28, 325, 960, 1029
BssT1I CCWWGG 5 cut(s) 275, 876, 929, 954, 978
Bst6I CTCTTC 7 cut(s) 519, 539, 585, 786, 879, 918, 1226
BstAUI TGTACA 1 cut(s) 661
BstC8I GCNNGC 4 cut(s) 315, 447, 468, 633
BstDEI CTNAG 2 cut(s) 750, 1324
BstDSI CCRYGG 2 cut(s) 876, 954
BstF5I GGATG 4 cut(s) 26, 71, 449, 805
BstKTI GATC 4 cut(s) 31, 328, 963, 1032
BstMAI GTCTC 2 cut(s) 224, 705
BstMBI GATC 4 cut(s) 28, 325, 960, 1029
BstMWI GCNNNNNNNGC 5 cut(s) 344, 455, 518, 613, 1205
BstNSI RCATGY 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 3 cut(s) 28, 325, 960
BstXI CCANNNNNNTGG 1 cut(s) 955
BstYI RGATCY 3 cut(s) 28, 325, 960
BsuI GTATCC 2 cut(s) 814, 1371
BsuRI GGCC 1 cut(s) 415
BtgI CCRYGG 2 cut(s) 876, 954
BtsCI GGATG 4 cut(s) 26, 71, 449, 805
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 4 cut(s) 315, 447, 468, 633
CciI TCATGA 2 cut(s) 388, 967
Csp6I GTAC 7 cut(s) 208, 239, 596, 662, 734, 1037, 1349
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 9 cut(s) 89, 144, 220, 389, 551, 877, 955, 968, 1279
CviQI GTAC 7 cut(s) 208, 239, 596, 662, 734, 1037, 1349
DdeI CTNAG 2 cut(s) 750, 1324
DpnI GATC 4 cut(s) 30, 327, 962, 1031
DpnII GATC 4 cut(s) 28, 325, 960, 1029
Eam1104I CTCTTC 7 cut(s) 519, 539, 585, 786, 879, 918, 1226
EarI CTCTTC 7 cut(s) 519, 539, 585, 786, 879, 918, 1226
Eco130I CCWWGG 5 cut(s) 275, 876, 929, 954, 978
Eco147I AGGCCT 1 cut(s) 415
Eco57I CTGAAG 1 cut(s) 657
Eco88I CYCGRG 1 cut(s) 321
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 5 cut(s) 275, 876, 929, 954, 978
EcoT22I ATGCAT 1 cut(s) 250
ErhI CCWWGG 5 cut(s) 275, 876, 929, 954, 978
FaeI CATG 9 cut(s) 92, 147, 223, 392, 554, 880, 958, 971, 1282
FalI AAGNNNNNCTT 8 cut(s) 468, 500, 788, 820, 1092, 1124, 1238, 1270
FaqI GGGAC 1 cut(s) 1305
FatI CATG 9 cut(s) 88, 143, 219, 388, 550, 876, 954, 967, 1278
FokI GGATG 4 cut(s) 33, 78, 436, 812
FspBI CTAG 7 cut(s) 276, 302, 348, 408, 434, 810, 1212
HaeIII GGCC 1 cut(s) 415
Hin1II CATG 9 cut(s) 92, 147, 223, 392, 554, 880, 958, 971, 1282
HindIII AAGCTT 3 cut(s) 315, 468, 752
HinfI GANTC 6 cut(s) 4, 404, 514, 554, 620, 1318
HphI GGTGA 3 cut(s) 529, 718, 1254
Hpy188I TCNGA 3 cut(s) 33, 724, 790
HpyAV CCTTC 7 cut(s) 287, 426, 758, 790, 1131, 1183, 1189
HpyF10VI GCNNNNNNNGC 5 cut(s) 344, 455, 518, 613, 1205
HpyF3I CTNAG 2 cut(s) 750, 1324
Hsp92II CATG 9 cut(s) 92, 147, 223, 392, 554, 880, 958, 971, 1282
Kzo9I GATC 4 cut(s) 28, 325, 960, 1029
LguI GCTCTTC 2 cut(s) 519, 918
LmnI GCTCC 1 cut(s) 1213
LweI GCATC 4 cut(s) 235, 458, 616, 1176
MaeI CTAG 7 cut(s) 276, 302, 348, 408, 434, 810, 1212
MaeIII GTNAC 1 cut(s) 1127
MalI GATC 4 cut(s) 30, 327, 962, 1031
MboI GATC 4 cut(s) 28, 325, 960, 1029
MfeI CAATTG 3 cut(s) 308, 440, 1266
MflI RGATCY 3 cut(s) 28, 325, 960
MhlI GDGCHC 2 cut(s) 167, 1004
MlyI GAGTC 4 cut(s) 413, 523, 629, 1327
Mph1103I ATGCAT 1 cut(s) 250
MroXI GAANNNNTTC 2 cut(s) 284, 429
MseI TTAA 3 cut(s) 1014, 1061, 1242
MslI CAYNNNNRTG 1 cut(s) 495
MunI CAATTG 3 cut(s) 308, 440, 1266
Mva1269I GAATGC 2 cut(s) 148, 185
MwoI GCNNNNNNNGC 5 cut(s) 344, 455, 518, 613, 1205
NcoI CCATGG 2 cut(s) 876, 954
NdeII GATC 4 cut(s) 28, 325, 960, 1029
NlaIII CATG 9 cut(s) 92, 147, 223, 392, 554, 880, 958, 971, 1282
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 1127
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 1 cut(s) 223
PagI TCATGA 2 cut(s) 388, 967
PceI AGGCCT 1 cut(s) 415
PciSI GCTCTTC 2 cut(s) 519, 918
PctI GAATGC 2 cut(s) 148, 185
PdmI GAANNNNTTC 2 cut(s) 284, 429
PfeI GAWTC 2 cut(s) 4, 554
PleI GAGTC 4 cut(s) 412, 522, 628, 1326
PpsI GAGTC 4 cut(s) 412, 522, 628, 1326
PspN4I GGNNCC 1 cut(s) 576
PsuI RGATCY 3 cut(s) 28, 325, 960
RsaI GTAC 7 cut(s) 209, 240, 597, 663, 735, 1038, 1350
RsaNI GTAC 7 cut(s) 208, 239, 596, 662, 734, 1037, 1349
RseI CAYNNNNRTG 1 cut(s) 495
SapI GCTCTTC 2 cut(s) 519, 918
SaqAI TTAA 3 cut(s) 1014, 1061, 1242
Sau3AI GATC 4 cut(s) 28, 325, 960, 1029
SchI GAGTC 4 cut(s) 413, 523, 629, 1327
SduI GDGCHC 2 cut(s) 167, 1004
SfaNI GCATC 4 cut(s) 235, 458, 616, 1176
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 7 cut(s) 342, 474, 506, 611, 1134, 1184, 1352
SmoI CTYRAG 7 cut(s) 342, 474, 506, 611, 1134, 1184, 1352
SseBI AGGCCT 1 cut(s) 415
SsiI CCGC 1 cut(s) 92
SspI AATATT 1 cut(s) 740
SspMI CTAG 7 cut(s) 276, 302, 348, 408, 434, 810, 1212
StuI AGGCCT 1 cut(s) 415
StyI CCWWGG 5 cut(s) 275, 876, 929, 954, 978
TaqI TCGA 2 cut(s) 460, 1313
TatI WGTACW 2 cut(s) 207, 661
TfiI GAWTC 2 cut(s) 4, 554
Tru1I TTAA 3 cut(s) 1014, 1061, 1242
Tru9I TTAA 3 cut(s) 1014, 1061, 1242
TscAI CASTG 1 cut(s) 14
TseFI GTSAC 1 cut(s) 1127
Tsp45I GTSAC 1 cut(s) 1127
TspDTI ATGAA 9 cut(s) 17, 132, 132, 276, 567, 699, 777, 847, 1267
TspRI CASTG 1 cut(s) 14
XapI RAATTY 7 cut(s) 52, 82, 187, 284, 351, 428, 687
XceI RCATGY 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 275
XmnI GAANNNNTTC 2 cut(s) 284, 429
XspI CTAG 7 cut(s) 276, 302, 348, 408, 434, 810, 1212
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.