Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000195

Physical Location & Seq

Genomic Coordinates Forward (+)

6853380 .. 6856903

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCCCATTGTCCAATATGTGGGCAAACTTGTCGAGGAATCACTATCTTGGAACAACAGACTCCAAATATCAGTTGGAGCTGCTCGGGGATTAACTTTTTTGCACAGTATAGAAATCATACACAGAAATGTCACCCTCAAAGACATTTGTATCCGATCCATATCCACAAATGAAGGTTATGAGCCTAGTAAGGAATTTGTTGAAGGACTACTAGCTCAATTGCAAGCCTCCCGAGATCTATTACAAGCCTCTCAAGCTAGAATTTCACAAGAGACCATGGTTCCCGAAGCATATCCTCATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

101

Amino Acids

11.36

Weight (kDa)

5.58

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000195)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g25780 FvH4_6g25920
rosa_chinensis	RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora	Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii	Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa	Rorug07G0321500
rosa_samantha	Rh3BG349100 Rh4AG240700
rosa_wichuraiana	Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	19
AclWI	GGATC	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	194, 261
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	3 cut(s)	80, 215, 257
AluI	AGCT	3 cut(s)	80, 215, 257
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	150
Ama87I	CYCGRG	2 cut(s)	84, 231
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	2 cut(s)	194, 261
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	2 cut(s)	84, 231
BaeI	ACNNNNGTAYC	2 cut(s)	133, 166
BbvI	GCAGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciVI	GTATCC	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	3 cut(s)	186, 212, 258
BfuI	GTATCC	1 cut(s)	161
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmeT110I	CYCGRG	2 cut(s)	84, 231
BmiI	GGNNCC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	237
BsaBI	GATNNNNATC	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	276
BseJI	GATNNNNATC	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	67
BsiHKCI	CYCGRG	2 cut(s)	84, 231
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	2 cut(s)	84, 231
Bsp143I	GATC	2 cut(s)	155, 235
Bsp19I	CCATGG	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	150
BspTNI	GGTCTC	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	2 cut(s)	155, 235
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	225
BstDSI	CCRYGG	1 cut(s)	276
BstKTI	GATC	2 cut(s)	158, 238
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	2 cut(s)	155, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuI	GTATCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	225
CciI	TCATGA	1 cut(s)	298
CviAII	CATG	2 cut(s)	277, 299
CviJI	RGCY	6 cut(s)	80, 184, 215, 227, 248, 257
CviKI_1	RGCY	6 cut(s)	80, 184, 215, 227, 248, 257
DpnI	GATC	2 cut(s)	157, 237
DpnII	GATC	2 cut(s)	155, 235
Eco130I	CCWWGG	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	266
Eco88I	CYCGRG	2 cut(s)	84, 231
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	2 cut(s)	280, 302
FaiI	YATR	8 cut(s)	18, 110, 119, 161, 180, 278, 292, 300
FatI	CATG	2 cut(s)	276, 298
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	3 cut(s)	186, 212, 258
GluI	GCNGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	280, 302
HinfI	GANTC	2 cut(s)	38, 60
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	155
Hpy188III	TCNNGA	3 cut(s)	231, 284, 299
HpyAV	CCTTC	2 cut(s)	167, 197
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4V	TGCA	2 cut(s)	103, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	280, 302
Kzo9I	GATC	2 cut(s)	155, 235
LmnI	GCTCC	1 cut(s)	77
Lsp1109I	GCAGC	1 cut(s)	67
MaeI	CTAG	3 cut(s)	186, 212, 258
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	157, 237
MboI	GATC	2 cut(s)	155, 235
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	1 cut(s)	235
MluCI	AATT	3 cut(s)	194, 218, 261
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	28, 146, 238, 259, 306
MseI	TTAA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	2 cut(s)	155, 235
NlaIII	CATG	2 cut(s)	280, 302
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	130
PagI	TCATGA	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	155, 235
SchI	GAGTC	1 cut(s)	54
SetI	ASST	4 cut(s)	82, 178, 217, 259
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	194, 218, 261
SspMI	CTAG	3 cut(s)	186, 212, 258
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	33
TasI	AATT	3 cut(s)	194, 218, 261
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	186
Van91I	CCANNNNNTGG	1 cut(s)	19
XapI	RAATTY	2 cut(s)	194, 261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XspI	CTAG	3 cut(s)	186, 212, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.