Rroxscaffold_2G00088550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000195
Physical Location & Seq
Forward (+)
10478569 .. 10481702
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088550.1

Sequence Viewer

Length: 402 bp
ATGCAAGACTGTGAGTACAAGATGGGCGTGTATCAAGAGACATTTGTTGTTACGTCCCATGAAGCTTATGAGCCTAGGAAAGAATTCGTTGAAGGACTACTAGCTCAATTGCAAGCCTCCCGAGATCTATTACAAGCCTCTCAAGCTAGAATTTCACAAGATACCATGGTTCCCGAAGCATATCCTCATGAGCAAGTATATGAGTGTAGGAAGCCTTCTCTTGACGAATTGCTAGCTCAATTGCAAGCATCCCAAGCTCGATTGCAAGCTTCTCAAGAATTGCTTATACATTCCAATGAGCAACTTGAACCAAGTTTTGCACAAGAGCCACCCTTCACCATTTATGAGCATGAATCTTTCTTTGACCAAGTGGAGCCTATTTCAAGATATAAAGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.39

Weight (kDa)

4.61

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 83, 150
AfaI GTAC 1 cut(s) 17
AgsI TTSAA 3 cut(s) 92, 308, 384
AluBI AGCT 6 cut(s) 65, 104, 146, 236, 257, 269
AluI AGCT 6 cut(s) 65, 104, 146, 236, 257, 269
Alw26I GTCTC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 120
ApoI RAATTY 2 cut(s) 83, 150
Asp700I GAANNNNTTC 1 cut(s) 83
AspA2I CCTAGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 328
AsuNHI GCTAGC 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 120
AvrII CCTAGG 1 cut(s) 74
BaeI ACNNNNGTAYC 2 cut(s) 153, 186
BarI GAAGNNNNNNTAC 2 cut(s) 199, 231
BccI CCATC 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 4 cut(s) 75, 101, 147, 233
BglII AGATCT 1 cut(s) 124
BlnI CCTAGG 1 cut(s) 74
BmeT110I CYCGRG 1 cut(s) 120
BmiI GGNNCC 2 cut(s) 171, 375
BmsI GCATC 1 cut(s) 257
BmtI GCTAGC 1 cut(s) 236
BpuEI CTTGAG 2 cut(s) 126, 258
BsaJI CCNNGG 2 cut(s) 74, 165
BseDI CCNNGG 2 cut(s) 74, 165
BseGI GGATG 1 cut(s) 248
BsiHKCI CYCGRG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 120
Bsp143I GATC 1 cut(s) 124
Bsp19I CCATGG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 171, 375
BspOI GCTAGC 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 74, 165
BssMI GATC 1 cut(s) 124
BssT1I CCWWGG 2 cut(s) 74, 165
Bst4CI ACNGT 1 cut(s) 11
BstC8I GCNNGC 4 cut(s) 114, 234, 246, 267
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 248
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 2 cut(s) 143, 254
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 248
Cac8I GCNNGC 4 cut(s) 114, 234, 246, 267
CciI TCATGA 1 cut(s) 187
Csp6I GTAC 1 cut(s) 16
CviAII CATG 4 cut(s) 59, 166, 188, 350
CviQI GTAC 1 cut(s) 16
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 74, 165
Eco88I CYCGRG 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 83
EcoT14I CCWWGG 2 cut(s) 74, 165
ErhI CCWWGG 2 cut(s) 74, 165
FaeI CATG 4 cut(s) 62, 169, 191, 353
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 1 cut(s) 40
FatI CATG 4 cut(s) 58, 165, 187, 349
FokI GGATG 1 cut(s) 235
FspBI CTAG 4 cut(s) 75, 101, 147, 233
Hin1II CATG 4 cut(s) 62, 169, 191, 353
HindIII AAGCTT 2 cut(s) 63, 267
HinfI GANTC 1 cut(s) 353
HphI GGTGA 1 cut(s) 328
Hpy188III TCNNGA 8 cut(s) 35, 120, 173, 188, 221, 275, 384, 399
HpyAV CCTTC 3 cut(s) 86, 225, 343
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 5 cut(s) 4, 112, 244, 265, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 254
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 4 cut(s) 62, 169, 191, 353
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 373
LweI GCATC 1 cut(s) 257
MaeI CTAG 4 cut(s) 75, 101, 147, 233
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 49
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MfeI CAATTG 2 cut(s) 107, 239
MflI RGATCY 1 cut(s) 124
MluCI AATT 6 cut(s) 83, 107, 150, 227, 239, 278
MnlI CCTC 3 cut(s) 127, 148, 195
MroXI GAANNNNTTC 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 294
MunI CAATTG 2 cut(s) 107, 239
MwoI GCNNNNNNNGC 2 cut(s) 143, 254
NcoI CCATGG 1 cut(s) 165
NdeII GATC 1 cut(s) 124
NheI GCTAGC 1 cut(s) 232
NlaIII CATG 4 cut(s) 62, 169, 191, 353
NlaIV GGNNCC 2 cut(s) 171, 375
PagI TCATGA 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 171, 375
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 294
Sau3AI GATC 1 cut(s) 124
SetI ASST 7 cut(s) 56, 67, 106, 148, 238, 259, 271
SfaNI GCATC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 2 cut(s) 141, 273
SmoI CTYRAG 2 cut(s) 141, 273
Sse9I AATT 6 cut(s) 83, 107, 150, 227, 239, 278
SspMI CTAG 4 cut(s) 75, 101, 147, 233
StyI CCWWGG 2 cut(s) 74, 165
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 259
TasI AATT 6 cut(s) 83, 107, 150, 227, 239, 278
TatI WGTACW 1 cut(s) 15
TfiI GAWTC 1 cut(s) 353
TspDTI ATGAA 2 cut(s) 75, 366
XapI RAATTY 2 cut(s) 83, 150
XmaJI CCTAGG 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 4 cut(s) 75, 101, 147, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.