Rmu_sc0003304.1_g000034

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003304.1
OG0000195
Physical Location & Seq
Reverse (-)
143352 .. 144773
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003304.1_g000034.1.cds

Sequence Viewer

Length: 1317 bp
atggatcgatggagctatggatgggaagatccgagagcatatgagcaagaaagtttctatggtggaggtcatcaagagtggaattctcatgcggtgggttctatgtcttcttgcaatgaaacttgtgctttgtgtaattctccttggcattcatcttttgagtgctctttgagatttgagtgcccggattttatgcaagagtgtgagtacaagatgggcatgtatcaagagacatttatacccaatgcatatccacaagaagaagcttatgagcctagtaaggaatttgttgacggactactagctcaattgcacgcctcccgagatcttttacatgcctctcaagctagaatttcacaagagaccatggttcccgaagcatatcctcatgagcaagtgtatgagtctaggaagccttctcttgaagaattgctagctcaattgcaagcgtcccaagctcgattgcaagcttctcaagaaatacttatacagaccaatgagcaacttgaggctagtctcgcacaagagccacccttcaccatttatgagcatgaatctttctttgaccaagtggagcctatttcaagagaagaagttgaggtgagagactacacttcggaggaatgggtgcaatattggaaatctaagcttccaaatggaggagacatatttgaagatgattccgaagaagaggatgtcttgtctaatgaggaggatgcggagcttgaagttatacaccataatcccttgttcatagaggaggatgcggagcttcaagtcatataccataatcccttattcattgaggtagatattcccatggaggaagagagtccttcaatactttgtgatgatgaaaaaattgaagagccaaggactttctcgcctcccaaatccatggagatccatcatgagcttcctaaggtggattgtagaatattgagcacttacattcttaatgagatgattgggatcaaggtacttttacctcccaatccaccattaagtggtcaatgtttctacaatgaggtgatggattggaaaggaaataaagcacttgcactcaccctttcccatcactctcaagagcttctaccacctattgttcctatgagcatcatttctaatccacttgagatggagaaggcaaggttggctcctagaagaaaaattgagaagagggggaagactaagaagctacacttttggccaccaattggagtattcttatgttcttggtcttgtctctatgacacatcgatgagtcccttagccccaaacaatagggtggtcgcacttgagaagtatccaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

438

Amino Acids

50.61

Weight (kDa)

4.58

Isoelectric Point (pI)

68.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1007, 1217
AciI CCGC 3 cut(s) 92, 719, 767
AclWI GGATC 4 cut(s) 12, 23, 898, 980
AcoI YGGCCR 1 cut(s) 1208
AcsI RAATTY 3 cut(s) 82, 284, 351
AfaI GTAC 2 cut(s) 209, 981
AfiI CCNNNNNNNGG 3 cut(s) 659, 1007, 1217
AgsI TTSAA 7 cut(s) 425, 585, 674, 728, 776, 840, 866
AjuI GAANNNNNNNTTGG 2 cut(s) 1136, 1168
Alw21I GWGCWC 2 cut(s) 167, 947
Alw26I GTCTC 6 cut(s) 224, 356, 521, 600, 657, 1250
AlwI GGATC 4 cut(s) 12, 23, 898, 980
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 1 cut(s) 1208
ApoI RAATTY 3 cut(s) 82, 284, 351
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 4 cut(s) 529, 613, 1042, 1057
AsuNHI GCTAGC 1 cut(s) 433
AvaI CYCGRG 1 cut(s) 321
AxyI CCTNAGG 1 cut(s) 921
BaeGI GKGCMC 1 cut(s) 185
BalI TGGCCA 1 cut(s) 1210
BbsI GAAGAC 2 cut(s) 99, 1193
Bbv12I GWGCWC 2 cut(s) 167, 947
BccI CCATC 7 cut(s) 3, 15, 208, 915, 1027, 1083, 1132
BciVI GTATCC 1 cut(s) 1317
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 6 cut(s) 224, 356, 521, 600, 657, 1250
BfaI CTAG 7 cut(s) 276, 302, 348, 408, 434, 513, 1161
BfuI GTATCC 1 cut(s) 1317
BglII AGATCT 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 321
BmiI GGNNCC 3 cut(s) 372, 576, 1158
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 3 cut(s) 706, 754, 1125
BmtI GCTAGC 1 cut(s) 437
BpiI GAAGAC 2 cut(s) 99, 1193
Bpu10I CCTNAGC 1 cut(s) 1270
BpuEI CTTGAG 5 cut(s) 327, 459, 527, 1068, 1154
BpuMI CCSGG 1 cut(s) 185
Bsa29I ATCGAT 2 cut(s) 7, 1259
BsaBI GATNNNNATC 1 cut(s) 971
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 5 cut(s) 143, 366, 819, 872, 897
Bsc4I CCNNNNNNNGG 3 cut(s) 659, 1007, 1217
Bse21I CCTNAGG 1 cut(s) 921
Bse3DI GCAATG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 971
BseCI ATCGAT 2 cut(s) 7, 1259
BseDI CCNNGG 5 cut(s) 143, 366, 819, 872, 897
BseGI GGATG 4 cut(s) 26, 700, 721, 769
BseJI GATNNNNATC 1 cut(s) 971
BseLI CCNNNNNNNGG 3 cut(s) 659, 1007, 1217
BseMI GCAATG 1 cut(s) 121
BseRI GAGGAG 3 cut(s) 675, 725, 773
BseSI GKGCMC 1 cut(s) 185
BshFI GGCC 1 cut(s) 1210
BshVI ATCGAT 2 cut(s) 7, 1259
BsiHKAI GWGCWC 2 cut(s) 167, 947
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 2 cut(s) 436, 1251
BslI CCNNNNNNNGG 3 cut(s) 659, 1007, 1217
BsmAI GTCTC 6 cut(s) 224, 356, 521, 600, 657, 1250
BsmFI GGGAC 2 cut(s) 436, 1251
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 1 cut(s) 1210
Bso31I GGTCTC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 321
Bsp1286I GDGCHC 3 cut(s) 167, 185, 947
Bsp143I GATC 5 cut(s) 4, 28, 325, 903, 972
Bsp19I CCATGG 3 cut(s) 366, 819, 897
BspACI CCGC 3 cut(s) 92, 719, 767
BspANI GGCC 1 cut(s) 1210
BspDI ATCGAT 2 cut(s) 7, 1259
BspHI TCATGA 2 cut(s) 388, 910
BspLI GGNNCC 3 cut(s) 372, 576, 1158
BspOI GCTAGC 1 cut(s) 437
BspPI GGATC 4 cut(s) 12, 23, 898, 980
BspQI GCTCTTC 1 cut(s) 861
BspTNI GGTCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 121
BssECI CCNNGG 5 cut(s) 143, 366, 819, 872, 897
BssMI GATC 5 cut(s) 4, 28, 325, 903, 972
BssT1I CCWWGG 5 cut(s) 143, 366, 819, 872, 897
Bst6I CTCTTC 4 cut(s) 684, 822, 861, 1172
BstC8I GCNNGC 4 cut(s) 315, 435, 447, 468
BstDEI CTNAG 4 cut(s) 645, 921, 1191, 1270
BstDSI CCRYGG 3 cut(s) 366, 819, 897
BstF5I GGATG 4 cut(s) 26, 700, 721, 769
BstKTI GATC 5 cut(s) 7, 31, 328, 906, 975
BstMAI GTCTC 6 cut(s) 224, 356, 521, 600, 657, 1250
BstMBI GATC 5 cut(s) 4, 28, 325, 903, 972
BstMWI GCNNNNNNNGC 4 cut(s) 344, 455, 518, 1154
BstNSI RCATGY 2 cut(s) 223, 338
BstSCI CCNGG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 185
BstV2I GAAGAC 2 cut(s) 99, 1193
BstX2I RGATCY 3 cut(s) 28, 325, 903
BstXI CCANNNNNNTGG 1 cut(s) 898
BstYI RGATCY 3 cut(s) 28, 325, 903
Bsu15I ATCGAT 2 cut(s) 7, 1259
Bsu36I CCTNAGG 1 cut(s) 921
BsuI GTATCC 1 cut(s) 1317
BsuRI GGCC 1 cut(s) 1210
BsuTUI ATCGAT 2 cut(s) 7, 1259
BtgI CCRYGG 3 cut(s) 366, 819, 897
BtsCI GGATG 4 cut(s) 26, 700, 721, 769
Cac8I GCNNGC 4 cut(s) 315, 435, 447, 468
CciI TCATGA 2 cut(s) 388, 910
ClaI ATCGAT 2 cut(s) 7, 1259
CseI GACGC 1 cut(s) 438
Csp6I GTAC 2 cut(s) 208, 980
CviAII CATG 9 cut(s) 89, 220, 335, 367, 389, 551, 820, 898, 911
CviQI GTAC 2 cut(s) 208, 980
DdeI CTNAG 4 cut(s) 645, 921, 1191, 1270
DpnI GATC 5 cut(s) 6, 30, 327, 905, 974
DpnII GATC 5 cut(s) 4, 28, 325, 903, 972
EaeI YGGCCR 1 cut(s) 1208
Eam1104I CTCTTC 4 cut(s) 684, 822, 861, 1172
EarI CTCTTC 4 cut(s) 684, 822, 861, 1172
Eco130I CCWWGG 5 cut(s) 143, 366, 819, 872, 897
Eco31I GGTCTC 1 cut(s) 356
Eco81I CCTNAGG 1 cut(s) 921
Eco88I CYCGRG 1 cut(s) 321
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 5 cut(s) 143, 366, 819, 872, 897
EcoT22I ATGCAT 1 cut(s) 250
ErhI CCWWGG 5 cut(s) 143, 366, 819, 872, 897
FaeI CATG 9 cut(s) 92, 223, 338, 370, 392, 554, 823, 901, 914
FalI AAGNNNNNCTT 4 cut(s) 468, 500, 1187, 1219
FaqI GGGAC 2 cut(s) 436, 1251
FatI CATG 9 cut(s) 88, 219, 334, 366, 388, 550, 819, 897, 910
FauNDI CATATG 1 cut(s) 40
FokI GGATG 4 cut(s) 33, 707, 728, 776
FspBI CTAG 7 cut(s) 276, 302, 348, 408, 434, 513, 1161
HaeIII GGCC 1 cut(s) 1210
HapII CCGG 1 cut(s) 185
HgaI GACGC 1 cut(s) 438
Hin1II CATG 9 cut(s) 92, 223, 338, 370, 392, 554, 823, 901, 914
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 3 cut(s) 264, 468, 647
HinfI GANTC 5 cut(s) 404, 554, 680, 832, 1264
HpaII CCGG 1 cut(s) 185
HphI GGTGA 4 cut(s) 529, 613, 1042, 1057
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 3 cut(s) 33, 619, 685
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 4 cut(s) 426, 544, 846, 1138
HpyCH4V TGCA 8 cut(s) 114, 196, 248, 313, 445, 466, 631, 1061
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 455, 518, 1154
HpyF3I CTNAG 4 cut(s) 645, 921, 1191, 1270
Hsp92II CATG 9 cut(s) 92, 223, 338, 370, 392, 554, 823, 901, 914
Kzo9I GATC 5 cut(s) 4, 28, 325, 903, 972
LguI GCTCTTC 1 cut(s) 861
LmnI GCTCC 5 cut(s) 12, 574, 721, 769, 1162
LpnPI CCDG 1 cut(s) 198
LweI GCATC 3 cut(s) 706, 754, 1125
MaeI CTAG 7 cut(s) 276, 302, 348, 408, 434, 513, 1161
MalI GATC 5 cut(s) 6, 30, 327, 905, 974
MboI GATC 5 cut(s) 4, 28, 325, 903, 972
MfeI CAATTG 3 cut(s) 308, 440, 1215
MflI RGATCY 3 cut(s) 28, 325, 903
MhlI GDGCHC 3 cut(s) 167, 185, 947
MlsI TGGCCA 1 cut(s) 1210
MluNI TGGCCA 1 cut(s) 1210
MlyI GAGTC 3 cut(s) 413, 841, 1273
Mox20I TGGCCA 1 cut(s) 1210
Mph1103I ATGCAT 1 cut(s) 250
MscI TGGCCA 1 cut(s) 1210
MseI TTAA 2 cut(s) 957, 1004
MslI CAYNNNNRTG 1 cut(s) 1259
Msp20I TGGCCA 1 cut(s) 1210
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 185
MunI CAATTG 3 cut(s) 308, 440, 1215
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 4 cut(s) 344, 455, 518, 1154
NciI CCSGG 1 cut(s) 185
NcoI CCATGG 3 cut(s) 366, 819, 897
NdeI CATATG 1 cut(s) 40
NdeII GATC 5 cut(s) 4, 28, 325, 903, 972
NheI GCTAGC 1 cut(s) 433
NlaIII CATG 9 cut(s) 92, 223, 338, 370, 392, 554, 823, 901, 914
NlaIV GGNNCC 3 cut(s) 372, 576, 1158
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 2 cut(s) 223, 338
PagI TCATGA 2 cut(s) 388, 910
PciSI GCTCTTC 1 cut(s) 861
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 2 cut(s) 554, 680
PflMI CCANNNNNTGG 2 cut(s) 1007, 1217
PleI GAGTC 3 cut(s) 412, 840, 1272
PpsI GAGTC 3 cut(s) 412, 840, 1272
PspN4I GGNNCC 3 cut(s) 372, 576, 1158
PsuI RGATCY 3 cut(s) 28, 325, 903
RsaI GTAC 2 cut(s) 209, 981
RsaNI GTAC 2 cut(s) 208, 980
RseI CAYNNNNRTG 1 cut(s) 1259
SapI GCTCTTC 1 cut(s) 861
SaqAI TTAA 2 cut(s) 957, 1004
Sau3AI GATC 5 cut(s) 4, 28, 325, 903, 972
SchI GAGTC 3 cut(s) 413, 841, 1273
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 3 cut(s) 167, 185, 947
SfaNI GCATC 3 cut(s) 706, 754, 1125
SmiMI CAYNNNNRTG 1 cut(s) 1259
SmlI CTYRAG 6 cut(s) 342, 474, 506, 1083, 1133, 1298
SmoI CTYRAG 6 cut(s) 342, 474, 506, 1083, 1133, 1298
SsiI CCGC 3 cut(s) 92, 719, 767
SspI AATATT 2 cut(s) 635, 939
SspMI CTAG 7 cut(s) 276, 302, 348, 408, 434, 513, 1161
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 5 cut(s) 143, 366, 819, 872, 897
TaqI TCGA 3 cut(s) 7, 460, 1259
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 2 cut(s) 554, 680
Tru1I TTAA 2 cut(s) 957, 1004
Tru9I TTAA 2 cut(s) 957, 1004
TspDTI ATGAA 6 cut(s) 132, 141, 567, 742, 790, 870
TspGWI ACGGA 1 cut(s) 309
Van91I CCANNNNNTGG 2 cut(s) 1007, 1217
XapI RAATTY 3 cut(s) 82, 284, 351
XceI RCATGY 2 cut(s) 223, 338
XspI CTAG 7 cut(s) 276, 302, 348, 408, 434, 513, 1161
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.