RchiOBHm_Chr2g0146841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000195
Physical Location & Seq
Forward (+)
64485818 .. 64486829
1012 bp
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UTR
Exon/CDS
Intron
PRQ51653

Sequence Viewer

Length: 747 bp
ATGGATCGATGGAATTATGGATGGGAAGACGCAATGAGATATGAGCAGCCTCCTCAAGATCAAGTTTATGCACCTATAAGTTCATCCATTGAAGAATTATTTGCTCAATTCAAAGCTATAAGTGAGAGTGTAGATCCAATCATTGAGCAATTCAAGGCTAGCCTACTTCAAGAGCAACCTCCCACCACTTTATATTTGCAAAAGCCTTTCTTTTATCAAGTGGAGCCTATTTCAAGAGAAGAAGTACATATCAAGCATCTTGAGCAAGAGTCGTTTATGCAAATTGATGATTATAGTGATGTTGATGTACAAGAAAGTGAGCTTGGTTATGAAAGTTTCAATGCAAGTGAGGTGAGAGACTACATTTCGGAGGAATGGGTGCAATATTGGAAATCTAAGCTTCCTAATGGAGGGGAGATATTTGAAGATGATTCCGATGAAGAGGATGTCTTTTCTAGTGAGGAGGATTCGGAGTTTGAAGTGATGCACCACAATCCCTTATTCATTGAGGCCGTACTTGAACATGATTCCGATGAGGAGGATGACTTATTCAGTAAGGGGAATGTGGAGTTTGAAGTCATACACCATAATCCCTTATTCATTGAGGTTGATATTCCCATGGAGGAAGAGAGTCTTTCAATACTTTGTGATGATGAAGAAATTGAAGAGCCAAAGACTTTCTTGCCTCCCACATCCATGGAGATCCATCATGAGCTTCCCAAGGTGGATTGTACTTTTACCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

29.15

Weight (kDa)

4.05

Isoelectric Point (pI)

74.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 12, 128, 697
AfaI GTAC 4 cut(s) 246, 309, 516, 733
AfiI CCNNNNNNNGG 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 306, 338
AluBI AGCT 4 cut(s) 116, 322, 400, 715
AluI AGCT 4 cut(s) 116, 322, 400, 715
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 3 cut(s) 12, 128, 697
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 364
AsuNHI GCTAGC 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 58
BccI CCATC 3 cut(s) 3, 15, 714
BceAI ACGGC 1 cut(s) 497
BcoDI GTCTC 1 cut(s) 351
BfaI CTAG 2 cut(s) 159, 456
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 2 cut(s) 265, 474
BmtI GCTAGC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 39, 281
Bsa29I ATCGAT 1 cut(s) 7
BsaJI CCNNGG 3 cut(s) 618, 696, 720
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse3DI GCAATG 1 cut(s) 39
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 3 cut(s) 618, 696, 720
BseGI GGATG 5 cut(s) 26, 83, 451, 547, 692
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMI GCAATG 1 cut(s) 39
BseRI GAGGAG 3 cut(s) 42, 476, 551
BseXI GCAGC 1 cut(s) 58
BshFI GGCC 1 cut(s) 512
BshVI ATCGAT 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 1 cut(s) 351
BsnI GGCC 1 cut(s) 512
Bsp1407I TGTACA 1 cut(s) 307
Bsp143I GATC 4 cut(s) 4, 58, 133, 702
Bsp19I CCATGG 2 cut(s) 618, 696
BspANI GGCC 1 cut(s) 512
BspDI ATCGAT 1 cut(s) 7
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 1 cut(s) 225
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 3 cut(s) 12, 128, 697
BspQI GCTCTTC 1 cut(s) 660
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 307
BssECI CCNNGG 3 cut(s) 618, 696, 720
BssMI GATC 4 cut(s) 4, 58, 133, 702
BssT1I CCWWGG 3 cut(s) 618, 696, 720
Bst6I CTCTTC 3 cut(s) 435, 621, 660
BstAUI TGTACA 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 396
BstDSI CCRYGG 2 cut(s) 618, 696
BstENI CCTNNNNNAGG 1 cut(s) 408
BstF5I GGATG 5 cut(s) 26, 83, 451, 547, 692
BstKTI GATC 4 cut(s) 7, 61, 136, 705
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 4 cut(s) 4, 58, 133, 702
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 2 cut(s) 133, 702
BstXI CCANNNNNNTGG 1 cut(s) 697
BstYI RGATCY 2 cut(s) 133, 702
Bsu15I ATCGAT 1 cut(s) 7
BsuRI GGCC 1 cut(s) 512
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 2 cut(s) 618, 696
BtsCI GGATG 5 cut(s) 26, 83, 451, 547, 692
Cac8I GCNNGC 1 cut(s) 160
CciI TCATGA 1 cut(s) 709
ClaI ATCGAT 1 cut(s) 7
CseI GACGC 1 cut(s) 38
Csp6I GTAC 4 cut(s) 245, 308, 515, 732
CviAII CATG 4 cut(s) 524, 619, 697, 710
CviQI GTAC 4 cut(s) 245, 308, 515, 732
DdeI CTNAG 1 cut(s) 396
DpnI GATC 4 cut(s) 6, 60, 135, 704
DpnII GATC 4 cut(s) 4, 58, 133, 702
Eam1104I CTCTTC 3 cut(s) 435, 621, 660
EarI CTCTTC 3 cut(s) 435, 621, 660
Eco130I CCWWGG 3 cut(s) 618, 696, 720
EcoNI CCTNNNNNAGG 1 cut(s) 408
EcoT14I CCWWGG 3 cut(s) 618, 696, 720
ErhI CCWWGG 3 cut(s) 618, 696, 720
FaeI CATG 4 cut(s) 527, 622, 700, 713
FalI AAGNNNNNCTT 6 cut(s) 194, 226, 618, 650, 665, 697
FatI CATG 4 cut(s) 523, 618, 696, 709
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 5 cut(s) 33, 70, 458, 554, 679
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 2 cut(s) 159, 456
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 1 cut(s) 512
HgaI GACGC 1 cut(s) 38
Hin1II CATG 4 cut(s) 527, 622, 700, 713
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 5 cut(s) 269, 431, 467, 527, 631
HphI GGTGA 1 cut(s) 364
Hpy188I TCNGA 4 cut(s) 370, 436, 472, 532
Hpy188III TCNNGA 5 cut(s) 56, 170, 234, 260, 710
HpyCH4V TGCA 6 cut(s) 71, 199, 280, 344, 382, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 1 cut(s) 396
Hsp92II CATG 4 cut(s) 527, 622, 700, 713
Kzo9I GATC 4 cut(s) 4, 58, 133, 702
LguI GCTCTTC 1 cut(s) 660
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 265, 474
MaeI CTAG 2 cut(s) 159, 456
MalI GATC 4 cut(s) 6, 60, 135, 704
MboI GATC 4 cut(s) 4, 58, 133, 702
MboII GAAGA 8 cut(s) 38, 104, 251, 437, 452, 638, 668, 677
MflI RGATCY 2 cut(s) 133, 702
MluCI AATT 6 cut(s) 13, 95, 107, 149, 282, 660
MlyI GAGTC 2 cut(s) 278, 640
MslI CAYNNNNRTG 1 cut(s) 695
MwoI GCNNNNNNNGC 1 cut(s) 262
NcoI CCATGG 2 cut(s) 618, 696
NdeII GATC 4 cut(s) 4, 58, 133, 702
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 4 cut(s) 527, 622, 700, 713
NlaIV GGNNCC 1 cut(s) 225
PagI TCATGA 1 cut(s) 709
PciSI GCTCTTC 1 cut(s) 660
PfeI GAWTC 3 cut(s) 431, 467, 527
PkrI GCNGC 1 cut(s) 48
PleI GAGTC 2 cut(s) 277, 639
PpsI GAGTC 2 cut(s) 277, 639
PspN4I GGNNCC 1 cut(s) 225
PsuI RGATCY 2 cut(s) 133, 702
RsaI GTAC 4 cut(s) 246, 309, 516, 733
RsaNI GTAC 4 cut(s) 245, 308, 515, 732
RseI CAYNNNNRTG 1 cut(s) 695
SapI GCTCTTC 1 cut(s) 660
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 4 cut(s) 4, 58, 133, 702
SchI GAGTC 2 cut(s) 278, 640
SfaNI GCATC 2 cut(s) 265, 474
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 2 cut(s) 54, 260
SmoI CTYRAG 2 cut(s) 54, 260
Sse9I AATT 6 cut(s) 13, 95, 107, 149, 282, 660
SspI AATATT 1 cut(s) 386
SspMI CTAG 2 cut(s) 159, 456
StyI CCWWGG 3 cut(s) 618, 696, 720
TaqI TCGA 1 cut(s) 7
TasI AATT 6 cut(s) 13, 95, 107, 149, 282, 660
TatI WGTACW 3 cut(s) 244, 307, 731
TfiI GAWTC 3 cut(s) 431, 467, 527
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 6 cut(s) 72, 345, 453, 493, 589, 669
XagI CCTNNNNNAGG 1 cut(s) 408
XspI CTAG 2 cut(s) 159, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.