Rroxscaffold_6G00423330

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000195
Physical Location & Seq
Reverse (-)
44440873 .. 44447228
6356 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423330.1

Sequence Viewer

Length: 714 bp
ATGTTTTTTCTTGCATTGCTTTTGCAGCAAACGTTTGCGGATCCGAAAAGCAAAGGTTGTCAATTTCTGGGTATGGATTGGTTGCCAAGACCATTTGCTATTCTCTGTATTGTTAATGGCTCCCAAAAACCAATGTTTCCTCAACATTCCTGCAAAGCGGGGGCACCGCTGCTAGTGATTACTTATTGCTGCATGGTATTGAGTCAAAAATGGGATCTTAATGATGCAACTTCTTCTGTTGGTTCTTTCTTTCAAAAATCATGGCTCCTTCAAAATCTAGGGCTGCCACTAGAGCAAGGCGAGAATATTATCAATGCATTGAAAGTGACAAGAGCGAGATCTGCACCACAACTAGCATATTCTGGTCAGTCAAATGCATCAGAAAATAAGCCATCACCAAAGAGAGCAACGACATCGTTAAGGGTCAGCAAGTCATTGACAAAGCATAAGAAGAAGCAGTCATCTAAGGCATCCAGCCCGAGAAAAAAGCGGCTTAAAGTTGTGAAGCGTGGAAAAGTCAAGAGACAAGTGAGTGATGGTGAGGTGACATCTTGTGGCACCGATGATGTATTGACAAAGGCTCTAGGTAACCATGAACACCATGGACGAGTGCGTGGTGTGGGGGGTCATGTCAAGCCTAGCGTATATTTTAACCTACCGAGGCAAAAAAGGAAAACGTTGAAGAGAGAATTAAGGAAGGCTGCAAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

237

Amino Acids

26.35

Weight (kDa)

10.49

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 163, 557
AciI CCGC 4 cut(s) 38, 158, 167, 490
AclI AACGTT 2 cut(s) 32, 677
AclWI GGATC 3 cut(s) 35, 48, 222
AgsI TTSAA 4 cut(s) 254, 272, 322, 682
Alw26I GTCTC 1 cut(s) 517
AlwI GGATC 3 cut(s) 35, 48, 222
Ama87I CYCGRG 1 cut(s) 478
ApeKI GCWGC 5 cut(s) 25, 169, 189, 283, 701
AsuHPI GGTGA 3 cut(s) 387, 551, 556
AvaI CYCGRG 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 166
BamHI GGATCC 1 cut(s) 40
BanI GGYRCC 2 cut(s) 163, 557
BbvI GCAGC 5 cut(s) 37, 156, 176, 270, 688
BccI CCATC 2 cut(s) 400, 530
BcgI CGANNNNNNTGC 2 cut(s) 396, 430
BcoDI GTCTC 1 cut(s) 517
BfaI CTAG 6 cut(s) 173, 278, 290, 353, 584, 639
BglII AGATCT 1 cut(s) 338
BisI GCNGC 6 cut(s) 26, 170, 190, 284, 491, 702
BlsI GCNGC 6 cut(s) 27, 171, 191, 285, 492, 703
BmeT110I CYCGRG 1 cut(s) 478
BmiI GGNNCC 5 cut(s) 42, 121, 165, 266, 559
BmsI GCATC 3 cut(s) 214, 386, 479
BsaJI CCNNGG 2 cut(s) 601, 659
Bse3DI GCAATG 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 601, 659
BseGI GGATG 1 cut(s) 470
BseMI GCAATG 1 cut(s) 14
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 5 cut(s) 37, 156, 176, 270, 688
BsgI GTGCAG 1 cut(s) 327
BshNI GGYRCC 2 cut(s) 163, 557
BsiHKCI CYCGRG 1 cut(s) 478
BsmAI GTCTC 1 cut(s) 517
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 40, 214, 338
Bsp19I CCATGG 1 cut(s) 601
BspACI CCGC 4 cut(s) 38, 158, 167, 490
BspLI GGNNCC 5 cut(s) 42, 121, 165, 266, 559
BspPI GGATC 3 cut(s) 35, 48, 222
BspT107I GGYRCC 2 cut(s) 163, 557
BsrDI GCAATG 1 cut(s) 14
BssECI CCNNGG 2 cut(s) 601, 659
BssMI GATC 3 cut(s) 40, 214, 338
BssT1I CCWWGG 1 cut(s) 601
Bst6I CTCTTC 1 cut(s) 677
BstDEI CTNAG 1 cut(s) 465
BstDSI CCRYGG 1 cut(s) 601
BstEII GGTNACC 1 cut(s) 587
BstF5I GGATG 1 cut(s) 470
BstKTI GATC 3 cut(s) 43, 217, 341
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 3 cut(s) 40, 214, 338
BstMWI GCNNNNNNNGC 3 cut(s) 25, 292, 341
BstPI GGTNACC 1 cut(s) 587
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 5 cut(s) 37, 156, 176, 270, 688
BstX2I RGATCY 3 cut(s) 40, 214, 338
BstYI RGATCY 3 cut(s) 40, 214, 338
BtgI CCRYGG 1 cut(s) 601
BtsCI GGATG 1 cut(s) 470
CviAII CATG 5 cut(s) 193, 261, 593, 602, 629
CviJI RGCY 9 cut(s) 120, 265, 283, 391, 477, 493, 581, 637, 701
CviKI_1 RGCY 9 cut(s) 120, 265, 283, 391, 477, 493, 581, 637, 701
DdeI CTNAG 1 cut(s) 465
DpnI GATC 3 cut(s) 42, 216, 340
DpnII GATC 3 cut(s) 40, 214, 338
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
Eco130I CCWWGG 1 cut(s) 601
Eco88I CYCGRG 1 cut(s) 478
Eco91I GGTNACC 1 cut(s) 587
EcoO65I GGTNACC 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 601
EcoT22I ATGCAT 2 cut(s) 319, 379
ErhI CCWWGG 1 cut(s) 601
FaeI CATG 5 cut(s) 196, 264, 596, 605, 632
FaiI YATR 9 cut(s) 74, 194, 262, 358, 447, 594, 603, 630, 646
FatI CATG 5 cut(s) 192, 260, 592, 601, 628
FauI CCCGC 1 cut(s) 151
Fnu4HI GCNGC 6 cut(s) 26, 170, 190, 284, 491, 702
FokI GGATG 1 cut(s) 457
Fsp4HI GCNGC 6 cut(s) 26, 170, 190, 284, 491, 702
FspBI CTAG 6 cut(s) 173, 278, 290, 353, 584, 639
GluI GCNGC 6 cut(s) 26, 170, 190, 284, 491, 702
Hin1II CATG 5 cut(s) 196, 264, 596, 605, 632
HinfI GANTC 1 cut(s) 202
HphI GGTGA 3 cut(s) 387, 551, 556
Hpy188I TCNGA 2 cut(s) 45, 382
Hpy188III TCNNGA 1 cut(s) 520
HpyAV CCTTC 2 cut(s) 278, 691
HpyCH4IV ACGT 2 cut(s) 32, 677
HpyCH4V TGCA 9 cut(s) 14, 25, 153, 192, 227, 317, 344, 377, 704
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 292, 341
HpyF3I CTNAG 1 cut(s) 465
HpySE526I ACGT 2 cut(s) 32, 677
Hsp92II CATG 5 cut(s) 196, 264, 596, 605, 632
Kzo9I GATC 3 cut(s) 40, 214, 338
LmnI GCTCC 2 cut(s) 125, 270
LpnPI CCDG 4 cut(s) 53, 163, 348, 487
Lsp1109I GCAGC 5 cut(s) 37, 156, 176, 270, 688
LweI GCATC 3 cut(s) 214, 386, 479
MaeI CTAG 6 cut(s) 173, 278, 290, 353, 584, 639
MaeII ACGT 2 cut(s) 32, 677
MaeIII GTNAC 3 cut(s) 325, 544, 587
MalI GATC 3 cut(s) 42, 216, 340
MboI GATC 3 cut(s) 40, 214, 338
MboII GAAGA 3 cut(s) 225, 463, 694
MflI RGATCY 3 cut(s) 40, 214, 338
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 3 cut(s) 62, 689, 709
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 3 cut(s) 150, 535, 654
Mph1103I ATGCAT 2 cut(s) 319, 379
MseI TTAA 7 cut(s) 114, 219, 419, 495, 651, 692, 712
MspA1I CMGCKG 1 cut(s) 169
MwoI GCNNNNNNNGC 3 cut(s) 25, 292, 341
NcoI CCATGG 1 cut(s) 601
NdeII GATC 3 cut(s) 40, 214, 338
NlaIII CATG 5 cut(s) 196, 264, 596, 605, 632
NlaIV GGNNCC 5 cut(s) 42, 121, 165, 266, 559
NmuCI GTSAC 2 cut(s) 325, 544
NsiI ATGCAT 2 cut(s) 319, 379
PkrI GCNGC 6 cut(s) 27, 171, 191, 285, 492, 703
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
Psp1406I AACGTT 2 cut(s) 32, 677
PspEI GGTNACC 1 cut(s) 587
PspN4I GGNNCC 5 cut(s) 42, 121, 165, 266, 559
PsuI RGATCY 3 cut(s) 40, 214, 338
SaqAI TTAA 7 cut(s) 114, 219, 419, 495, 651, 692, 712
SatI GCNGC 6 cut(s) 26, 170, 190, 284, 491, 702
Sau3AI GATC 3 cut(s) 40, 214, 338
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 1 cut(s) 166
SetI ASST 6 cut(s) 35, 58, 546, 589, 657, 680
SfaNI GCATC 3 cut(s) 214, 386, 479
Sse9I AATT 3 cut(s) 62, 689, 709
SsiI CCGC 4 cut(s) 38, 158, 167, 490
SspI AATATT 1 cut(s) 307
SspMI CTAG 6 cut(s) 173, 278, 290, 353, 584, 639
StyI CCWWGG 1 cut(s) 601
TaiI ACGT 2 cut(s) 35, 680
TasI AATT 3 cut(s) 62, 689, 709
TauI GCSGC 1 cut(s) 493
Tru1I TTAA 7 cut(s) 114, 219, 419, 495, 651, 692, 712
Tru9I TTAA 7 cut(s) 114, 219, 419, 495, 651, 692, 712
TseFI GTSAC 2 cut(s) 325, 544
TseI GCWGC 5 cut(s) 25, 169, 189, 283, 701
Tsp45I GTSAC 2 cut(s) 325, 544
TspDTI ATGAA 1 cut(s) 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 599
XspI CTAG 6 cut(s) 173, 278, 290, 353, 584, 639
Zsp2I ATGCAT 2 cut(s) 319, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.