Rmu_sc0004941.1_g000047

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004941.1
OG0000195
Physical Location & Seq
Reverse (-)
152593 .. 153174
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004941.1_g000047.1.cds

Sequence Viewer

Length: 582 bp
atggacctatatcaagagacatttgtacccgacgcatatccacaagatgaagcttatgagcctaggaaggaattcgttgaaggactactagctcaattgcaagcctctcgagatcttttacaagtctctcaagttaggatttcacaagagaccatggtgtccgaaggatatcctcataagcaagagtacgagtctaggaagccttctcttgaagaattgctagctcaattgcaagcgtcccaagctcaattgcaagcttctcaagaaatacttatacataccaatgagcaacttgagactagtcttgcacaagagccacccttcaccatttatgagcatgaatctttctttgaccaagtggagcctatttccagagaagaagtgtatatcgagcatcttgagcaagaatcctttatgcaagttgaaaatgatgatagtgatgttgatgtacaagaaattgagcttggttatgaaagtttcaatgcaagtgaggtgagagactacacttcggaggaatgggtgcaatattggaaatctaaacttccaaatggaggagagatatttgaagatgattccgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.57

Weight (kDa)

4.07

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 71
AfaI GTAC 3 cut(s) 27, 188, 450
AfiI CCNNNNNNNGG 1 cut(s) 551
AgsI TTSAA 5 cut(s) 80, 212, 425, 481, 566
AhlI ACTAGT 1 cut(s) 299
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AluBI AGCT 6 cut(s) 53, 92, 224, 245, 257, 463
AluI AGCT 6 cut(s) 53, 92, 224, 245, 257, 463
Alw26I GTCTC 5 cut(s) 11, 130, 143, 290, 492
Ama87I CYCGRG 1 cut(s) 108
ApoI RAATTY 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 71
AspA2I CCTAGG 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 316, 505
AsuNHI GCTAGC 1 cut(s) 220
AvaI CYCGRG 1 cut(s) 108
AvaII GGWCC 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 62
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BcoDI GTCTC 5 cut(s) 11, 130, 143, 290, 492
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 5 cut(s) 63, 89, 195, 221, 300
BglII AGATCT 1 cut(s) 112
BlnI CCTAGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 363
BmsI GCATC 1 cut(s) 403
BmtI GCTAGC 1 cut(s) 224
BpuEI CTTGAG 4 cut(s) 114, 246, 314, 419
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 62, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 551
BseDI CCNNGG 2 cut(s) 62, 153
BseLI CCNNNNNNNGG 1 cut(s) 551
BseRI GAGGAG 1 cut(s) 567
BsiHKCI CYCGRG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 551
BsmAI GTCTC 5 cut(s) 11, 130, 143, 290, 492
BsmFI GGGAC 1 cut(s) 223
Bso31I GGTCTC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 448
Bsp143I GATC 1 cut(s) 112
Bsp19I CCATGG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 363
BspOI GCTAGC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 448
BssECI CCNNGG 2 cut(s) 62, 153
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 2 cut(s) 62, 153
BstAUI TGTACA 1 cut(s) 448
BstC8I GCNNGC 4 cut(s) 102, 222, 234, 255
BstDSI CCRYGG 1 cut(s) 153
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 5 cut(s) 11, 130, 143, 290, 492
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 242, 400
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BtgI CCRYGG 1 cut(s) 153
Cac8I GCNNGC 4 cut(s) 102, 222, 234, 255
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 2 cut(s) 41, 225
Csp6I GTAC 3 cut(s) 26, 187, 449
CviAII CATG 2 cut(s) 154, 338
CviQI GTAC 3 cut(s) 26, 187, 449
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
DrdI GACNNNNNNGTC 1 cut(s) 157
DseDI GACNNNNNNGTC 1 cut(s) 157
Eco130I CCWWGG 2 cut(s) 62, 153
Eco31I GGTCTC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 71
EcoRV GATATC 1 cut(s) 170
EcoT14I CCWWGG 2 cut(s) 62, 153
ErhI CCWWGG 2 cut(s) 62, 153
FaeI CATG 2 cut(s) 157, 341
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 153, 337
FspBI CTAG 5 cut(s) 63, 89, 195, 221, 300
HgaI GACGC 2 cut(s) 41, 225
Hin1II CATG 2 cut(s) 157, 341
HindIII AAGCTT 2 cut(s) 51, 255
HinfI GANTC 4 cut(s) 191, 341, 407, 572
HphI GGTGA 2 cut(s) 316, 505
Hpy188I TCNGA 3 cut(s) 163, 511, 577
Hpy188III TCNNGA 7 cut(s) 14, 108, 110, 209, 263, 372, 398
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 5 cut(s) 61, 74, 158, 213, 331
HpyCH4V TGCA 7 cut(s) 100, 232, 253, 308, 418, 485, 523
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 400
Hsp92II CATG 2 cut(s) 157, 341
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 1 cut(s) 385
LweI GCATC 1 cut(s) 403
MaeI CTAG 5 cut(s) 63, 89, 195, 221, 300
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 3 cut(s) 224, 389, 578
MfeI CAATTG 3 cut(s) 95, 227, 248
MflI RGATCY 1 cut(s) 112
MluCI AATT 6 cut(s) 71, 95, 215, 227, 248, 456
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 5 cut(s) 115, 183, 484, 505, 545
MroXI GAANNNNTTC 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 282
MunI CAATTG 3 cut(s) 95, 227, 248
MwoI GCNNNNNNNGC 2 cut(s) 242, 400
NcoI CCATGG 1 cut(s) 153
NdeII GATC 1 cut(s) 112
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 2 cut(s) 157, 341
NlaIV GGNNCC 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 3 cut(s) 341, 407, 572
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 3 cut(s) 27, 188, 450
RsaNI GTAC 3 cut(s) 26, 187, 449
RseI CAYNNNNRTG 1 cut(s) 282
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 200
SetI ASST 8 cut(s) 9, 55, 94, 226, 247, 259, 465, 495
SfaNI GCATC 1 cut(s) 403
Sfr274I CTCGAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 5 cut(s) 108, 129, 261, 293, 398
SmoI CTYRAG 5 cut(s) 108, 129, 261, 293, 398
SpeI ACTAGT 1 cut(s) 299
Sse9I AATT 6 cut(s) 71, 95, 215, 227, 248, 456
SspI AATATT 1 cut(s) 527
SspMI CTAG 5 cut(s) 63, 89, 195, 221, 300
StyI CCWWGG 2 cut(s) 62, 153
TaqI TCGA 2 cut(s) 109, 390
TasI AATT 6 cut(s) 71, 95, 215, 227, 248, 456
TatI WGTACW 1 cut(s) 448
TfiI GAWTC 3 cut(s) 341, 407, 572
TspDTI ATGAA 3 cut(s) 63, 354, 486
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 108
XmaJI CCTAGG 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 5 cut(s) 63, 89, 195, 221, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.