Rmu_sc0001464.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001464.1
OG0000195
Physical Location & Seq
Reverse (-)
112082 .. 112849
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001464.1_g000025.1.cds

Sequence Viewer

Length: 768 bp
atggttcccgaagtatatcctcatgagcaagcatttgagtctaggaagccttctcttgaagaattgctagctcaattacaagcttcccaagcccaattgcaagcctcacaagctcaattgcaagcttctcaagaaatacttgcacattccaatgagcaacttgaggcaagtcttgcacaagagccatccctcgccatttatgagcatgagtctttctttgaccaagtagagcctatttcaagagaagaagtgcatatcaagcatcttaagcaagagtcttttactcaagttgaagatgattctagtgatgttgatgtacaagaaagtgagtttggttatgaaagtttcaatgcaagtggggtgagagactacacttcggcggaatgggtacaatattggaaatctaagcttccaaatgaaggggagatatttgaagatgattccgaagaagaagatgtcttatctagtgaggaggatgtgaagtttgaagttatacaccataatcccttgttcaccgagaaggatgtggagcttgaagtcatacaccataatcccttatttgttgaggttgatattcccatagaggaagagagtgcttcagtgtcttgtgatggtgaagaaattaaagaggcaaggactttctcttctcccacatccatggagatccatcatgagcttcccaaggtggagagtagaacattgagtacttatgttctttatgagaagattgagattaaggtattttttacctctcaatccaccaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

29.25

Weight (kDa)

4.31

Isoelectric Point (pI)

65.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 380
AclWI GGATC 1 cut(s) 658
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 3 cut(s) 318, 390, 706
AfiI CCNNNNNNNGG 1 cut(s) 419
AflII CTTAAG 1 cut(s) 266
AgsI TTSAA 7 cut(s) 59, 240, 293, 349, 434, 488, 536
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 7 cut(s) 71, 83, 113, 125, 409, 532, 676
AluI AGCT 7 cut(s) 71, 83, 113, 125, 409, 532, 676
Alw26I GTCTC 1 cut(s) 360
AlwI GGATC 1 cut(s) 658
AsuHPI GGTGA 3 cut(s) 373, 505, 626
AsuNHI GCTAGC 1 cut(s) 67
BccI CCATC 3 cut(s) 193, 605, 675
BcoDI GTCTC 1 cut(s) 360
BfaI CTAG 4 cut(s) 42, 68, 303, 465
BfrI CTTAAG 1 cut(s) 266
BmcAI AGTACT 1 cut(s) 706
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 271
BmtI GCTAGC 1 cut(s) 71
BpuEI CTTGAG 3 cut(s) 114, 182, 270
BsaJI CCNNGG 2 cut(s) 657, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 419
BseDI CCNNGG 2 cut(s) 657, 681
BseGI GGATG 4 cut(s) 185, 481, 529, 653
BseLI CCNNNNNNNGG 1 cut(s) 419
BseRI GAGGAG 1 cut(s) 485
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 1 cut(s) 360
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 1 cut(s) 663
Bsp19I CCATGG 1 cut(s) 657
BspACI CCGC 1 cut(s) 380
BspHI TCATGA 2 cut(s) 22, 670
BspLI GGNNCC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 71
BspPI GGATC 1 cut(s) 658
BspTI CTTAAG 1 cut(s) 266
BsrGI TGTACA 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 657, 681
BssMI GATC 1 cut(s) 663
BssT1I CCWWGG 2 cut(s) 657, 681
Bst6I CTCTTC 2 cut(s) 582, 649
BstAFI CTTAAG 1 cut(s) 266
BstAPI GCANNNNNTGC 1 cut(s) 173
BstAUI TGTACA 1 cut(s) 316
BstC8I GCNNGC 4 cut(s) 30, 69, 102, 123
BstDEI CTNAG 1 cut(s) 405
BstDSI CCRYGG 1 cut(s) 657
BstF5I GGATG 4 cut(s) 185, 481, 529, 653
BstKTI GATC 1 cut(s) 666
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 1 cut(s) 663
BstMWI GCNNNNNNNGC 5 cut(s) 89, 110, 173, 259, 268
BstX2I RGATCY 1 cut(s) 663
BstXI CCANNNNNNTGG 1 cut(s) 658
BstYI RGATCY 1 cut(s) 663
BtgI CCRYGG 1 cut(s) 657
BtsCI GGATG 4 cut(s) 185, 481, 529, 653
BtsIMutI CAGTG 1 cut(s) 606
Cac8I GCNNGC 4 cut(s) 30, 69, 102, 123
CciI TCATGA 2 cut(s) 22, 670
Csp6I GTAC 3 cut(s) 317, 389, 705
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 4 cut(s) 23, 206, 658, 671
CviQI GTAC 3 cut(s) 317, 389, 705
DdeI CTNAG 1 cut(s) 405
DpnI GATC 1 cut(s) 665
DpnII GATC 1 cut(s) 663
Eam1104I CTCTTC 2 cut(s) 582, 649
EarI CTCTTC 2 cut(s) 582, 649
EciI GGCGGA 1 cut(s) 395
Eco130I CCWWGG 2 cut(s) 657, 681
Eco57I CTGAAG 1 cut(s) 582
EcoT14I CCWWGG 2 cut(s) 657, 681
ErhI CCWWGG 2 cut(s) 657, 681
FaeI CATG 4 cut(s) 26, 209, 661, 674
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 4 cut(s) 22, 205, 657, 670
FokI GGATG 4 cut(s) 172, 488, 536, 640
FspBI CTAG 4 cut(s) 42, 68, 303, 465
Hin1II CATG 4 cut(s) 26, 209, 661, 674
HindIII AAGCTT 3 cut(s) 81, 123, 407
HinfI GANTC 5 cut(s) 38, 209, 275, 299, 440
HphI GGTGA 3 cut(s) 373, 505, 626
Hpy166II GTNNAC 1 cut(s) 513
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 6 cut(s) 8, 23, 56, 131, 240, 671
Hpy8I GTNNAC 1 cut(s) 513
HpyAV CCTTC 3 cut(s) 60, 413, 514
HpyCH4V TGCA 6 cut(s) 100, 121, 143, 176, 253, 353
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 110, 173, 259, 268
HpyF3I CTNAG 1 cut(s) 405
Hsp92II CATG 4 cut(s) 26, 209, 661, 674
Kzo9I GATC 1 cut(s) 663
LmnI GCTCC 1 cut(s) 529
LweI GCATC 1 cut(s) 271
MaeI CTAG 4 cut(s) 42, 68, 303, 465
MalI GATC 1 cut(s) 665
MboI GATC 1 cut(s) 663
MfeI CAATTG 2 cut(s) 95, 116
MflI RGATCY 1 cut(s) 663
MluCI AATT 6 cut(s) 62, 74, 95, 116, 621, 763
MlyI GAGTC 3 cut(s) 47, 218, 284
MseI TTAA 4 cut(s) 267, 624, 735, 766
MslI CAYNNNNRTG 2 cut(s) 150, 656
MspCI CTTAAG 1 cut(s) 266
MunI CAATTG 2 cut(s) 95, 116
MwoI GCNNNNNNNGC 5 cut(s) 89, 110, 173, 259, 268
NcoI CCATGG 1 cut(s) 657
NdeII GATC 1 cut(s) 663
NheI GCTAGC 1 cut(s) 67
NlaIII CATG 4 cut(s) 26, 209, 661, 674
NlaIV GGNNCC 1 cut(s) 6
PagI TCATGA 2 cut(s) 22, 670
PfeI GAWTC 2 cut(s) 299, 440
PleI GAGTC 3 cut(s) 46, 217, 283
PpsI GAGTC 3 cut(s) 46, 217, 283
PspN4I GGNNCC 1 cut(s) 6
PsrI GAACNNNNNNTAC 2 cut(s) 688, 720
PsuI RGATCY 1 cut(s) 663
RsaI GTAC 3 cut(s) 318, 390, 706
RsaNI GTAC 3 cut(s) 317, 389, 705
RseI CAYNNNNRTG 2 cut(s) 150, 656
SaqAI TTAA 4 cut(s) 267, 624, 735, 766
Sau3AI GATC 1 cut(s) 663
ScaI AGTACT 1 cut(s) 706
SchI GAGTC 3 cut(s) 47, 218, 284
SfaNI GCATC 1 cut(s) 271
SmiMI CAYNNNNRTG 2 cut(s) 150, 656
SmlI CTYRAG 4 cut(s) 129, 161, 266, 285
SmoI CTYRAG 4 cut(s) 129, 161, 266, 285
Sse9I AATT 6 cut(s) 62, 74, 95, 116, 621, 763
SsiI CCGC 1 cut(s) 380
SspI AATATT 1 cut(s) 395
SspMI CTAG 4 cut(s) 42, 68, 303, 465
StyI CCWWGG 2 cut(s) 657, 681
TasI AATT 6 cut(s) 62, 74, 95, 116, 621, 763
TatI WGTACW 2 cut(s) 316, 704
TfiI GAWTC 2 cut(s) 299, 440
Tru1I TTAA 4 cut(s) 267, 624, 735, 766
Tru9I TTAA 4 cut(s) 267, 624, 735, 766
TscAI CASTG 1 cut(s) 606
TspDTI ATGAA 2 cut(s) 354, 432
TspRI CASTG 1 cut(s) 606
Vha464I CTTAAG 1 cut(s) 266
XspI CTAG 4 cut(s) 42, 68, 303, 465
ZrmI AGTACT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.