Rroxscaffold_1G00028870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000195
Physical Location & Seq
Reverse (-)
37071619 .. 37080322
8704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00028870.1

Sequence Viewer

Length: 969 bp
ATGGATCGATGGAGTTATGCATGGGAAGACCCAATGGGATATGAGCAACCTCCTCAAGATCGAGCTTATGCACCTTCAAAGCCATCTATCGAAGAATTGTTTACTCAATTCAAAGCTATAAGTGAGAGTGTAGATCCAATCATAGAGCAATTCAAGGCTAGCCTACTTCAAGAGCAACCTCCCACCACTTTATATTTGCAAGAGCCTTTCTTTGATCAAGTGGAGCCTATTTCAAGAGAAGAAGTACATATCAAGCATCTTGAGCAAGAGTCGTTTATGCAAATTGATGATTATAGTGATGTTGATGTACAAGAAAGTGAGCTTGGTTATGAAAGTTCCAATGCAAGTGGGGTGAAAGACTACACTTCGGAGGAATGGGTGCAATATTGGAAATCTAAGCTTCCTAATGGAGGGGAGATATTTGAAGATGATTCCGATGAAGAGGATGTCTTTTCTAGTGAGGAGGATGCGGAGTTTGAAGTGATGCACGACAATCCCTTATTCATTGAGGCCGTACTTGAACATGATTTCGATGAGGAGGATGGCTTATCTAGTAAGGGGAATGCGGAGTTTGAAGTCATACACCATAATCCCTTATTCATTGAGGTCGATATTCCCATGGAGGAAGAGACAAACGTTTGCGGATCCGAAAAGCAAAGGTTGTCAATTTCGGGTATGGATTGGTTGCCAAGACCATTTGCTATTCTCTGTATTGTTAATGGCTCCCAAAAACCAATGTTTCCTCAACATTCCTGCAAAGCGCGGGCACCGCTGCTAGTGATTACTTATTGCTGCATGGTATTGAGTCAAAAATGGGATCTTAATGATGCAACTTCTTCTATCATGGCTCCTTCAAAATCTAGGGCTGCCACTAGAGCAAGGCAGAATATTATCAATGCATTGAAAGTGACAAGAGCGAGATCTGCACCACAACTAGCATATTCGGTCAGTCAAATGCATCGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

36.89

Weight (kDa)

4.45

Isoelectric Point (pI)

64.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 766
AccII CGCG 1 cut(s) 763
AciI CCGC 5 cut(s) 470, 566, 642, 763, 770
AclI AACGTT 1 cut(s) 636
AclWI GGATC 5 cut(s) 12, 128, 639, 652, 825
AfaI GTAC 3 cut(s) 246, 309, 516
AfiI CCNNNNNNNGG 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 306, 338
AluBI AGCT 4 cut(s) 65, 116, 322, 400
AluI AGCT 4 cut(s) 65, 116, 322, 400
Alw26I GTCTC 1 cut(s) 623
AlwI GGATC 5 cut(s) 12, 128, 639, 652, 825
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 3 cut(s) 772, 792, 866
AspLEI GCGC 1 cut(s) 763
AsuHPI GGTGA 1 cut(s) 364
AsuNHI GCTAGC 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 769
BamHI GGATCC 1 cut(s) 644
BanI GGYRCC 1 cut(s) 766
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 3 cut(s) 759, 779, 853
BccI CCATC 3 cut(s) 3, 91, 536
BceAI ACGGC 1 cut(s) 497
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 623
BfaI CTAG 7 cut(s) 159, 456, 552, 776, 861, 873, 935
BglII AGATCT 1 cut(s) 920
BisI GCNGC 3 cut(s) 773, 793, 867
BlsI GCNGC 3 cut(s) 774, 794, 868
BmiI GGNNCC 5 cut(s) 225, 646, 724, 768, 849
BmsI GCATC 4 cut(s) 265, 457, 474, 817
BmtI GCTAGC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 39, 281
Bsa29I ATCGAT 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 618
Bsc4I CCNNNNNNNGG 1 cut(s) 410
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 618
BseGI GGATG 3 cut(s) 451, 472, 547
BseLI CCNNNNNNNGG 1 cut(s) 410
BseRI GAGGAG 3 cut(s) 42, 476, 551
BseSI GKGCMC 1 cut(s) 769
BseXI GCAGC 3 cut(s) 759, 779, 853
BsgI GTGCAG 1 cut(s) 909
Bsh1236I CGCG 1 cut(s) 763
BshFI GGCC 1 cut(s) 512
BshNI GGYRCC 1 cut(s) 766
BshVI ATCGAT 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 410
BsmAI GTCTC 1 cut(s) 623
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 1 cut(s) 512
Bsp1286I GDGCHC 1 cut(s) 769
Bsp1407I TGTACA 1 cut(s) 307
Bsp143I GATC 7 cut(s) 4, 58, 133, 214, 644, 817, 920
Bsp19I CCATGG 1 cut(s) 618
BspACI CCGC 5 cut(s) 470, 566, 642, 763, 770
BspANI GGCC 1 cut(s) 512
BspDI ATCGAT 1 cut(s) 7
BspFNI CGCG 1 cut(s) 763
BspLI GGNNCC 5 cut(s) 225, 646, 724, 768, 849
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 5 cut(s) 12, 128, 639, 652, 825
BspT107I GGYRCC 1 cut(s) 766
BsrGI TGTACA 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 7 cut(s) 4, 58, 133, 214, 644, 817, 920
BssT1I CCWWGG 1 cut(s) 618
Bst6I CTCTTC 2 cut(s) 435, 621
BstAUI TGTACA 1 cut(s) 307
BstC8I GCNNGC 2 cut(s) 160, 765
BstDEI CTNAG 1 cut(s) 396
BstDSI CCRYGG 1 cut(s) 618
BstENI CCTNNNNNAGG 1 cut(s) 408
BstF5I GGATG 3 cut(s) 451, 472, 547
BstFNI CGCG 1 cut(s) 763
BstHHI GCGC 1 cut(s) 763
BstKTI GATC 7 cut(s) 7, 61, 136, 217, 647, 820, 923
BstMAI GTCTC 1 cut(s) 623
BstMBI GATC 7 cut(s) 4, 58, 133, 214, 644, 817, 920
BstMWI GCNNNNNNNGC 4 cut(s) 262, 769, 875, 923
BstSLI GKGCMC 1 cut(s) 769
BstUI CGCG 1 cut(s) 763
BstV1I GCAGC 3 cut(s) 759, 779, 853
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 4 cut(s) 133, 644, 817, 920
BstYI RGATCY 4 cut(s) 133, 644, 817, 920
Bsu15I ATCGAT 1 cut(s) 7
BsuRI GGCC 1 cut(s) 512
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 618
BtsCI GGATG 3 cut(s) 451, 472, 547
Cac8I GCNNGC 2 cut(s) 160, 765
CfoI GCGC 1 cut(s) 763
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 3 cut(s) 245, 308, 515
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 5 cut(s) 21, 524, 619, 796, 844
CviQI GTAC 3 cut(s) 245, 308, 515
DdeI CTNAG 1 cut(s) 396
DpnI GATC 7 cut(s) 6, 60, 135, 216, 646, 819, 922
DpnII GATC 7 cut(s) 4, 58, 133, 214, 644, 817, 920
Eam1104I CTCTTC 2 cut(s) 435, 621
EarI CTCTTC 2 cut(s) 435, 621
Eco130I CCWWGG 1 cut(s) 618
EcoNI CCTNNNNNAGG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 618
EcoT22I ATGCAT 3 cut(s) 22, 901, 960
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 5 cut(s) 24, 527, 622, 799, 847
FatI CATG 5 cut(s) 20, 523, 618, 795, 843
FauI CCCGC 1 cut(s) 756
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 3 cut(s) 773, 793, 867
FokI GGATG 3 cut(s) 458, 479, 554
Fsp4HI GCNGC 3 cut(s) 773, 793, 867
FspBI CTAG 7 cut(s) 159, 456, 552, 776, 861, 873, 935
GlaI GCGC 1 cut(s) 762
GluI GCNGC 3 cut(s) 773, 793, 867
HaeIII GGCC 1 cut(s) 512
HhaI GCGC 1 cut(s) 763
Hin1II CATG 5 cut(s) 24, 527, 622, 799, 847
Hin6I GCGC 1 cut(s) 761
HinP1I GCGC 1 cut(s) 761
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 3 cut(s) 269, 431, 805
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 3 cut(s) 370, 436, 649
Hpy188III TCNNGA 4 cut(s) 56, 170, 234, 260
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 2 cut(s) 84, 861
HpyCH4IV ACGT 1 cut(s) 636
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 769, 875, 923
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 1 cut(s) 636
Hsp92II CATG 5 cut(s) 24, 527, 622, 799, 847
HspAI GCGC 1 cut(s) 761
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 7 cut(s) 4, 58, 133, 214, 644, 817, 920
LmnI GCTCC 3 cut(s) 223, 728, 853
LpnPI CCDG 1 cut(s) 766
Lsp1109I GCAGC 3 cut(s) 759, 779, 853
LweI GCATC 4 cut(s) 265, 457, 474, 817
MaeI CTAG 7 cut(s) 159, 456, 552, 776, 861, 873, 935
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 1 cut(s) 907
MalI GATC 7 cut(s) 6, 60, 135, 216, 646, 819, 922
MboI GATC 7 cut(s) 4, 58, 133, 214, 644, 817, 920
MboII GAAGA 7 cut(s) 38, 104, 251, 437, 452, 638, 828
MflI RGATCY 4 cut(s) 133, 644, 817, 920
MhlI GDGCHC 1 cut(s) 769
MluCI AATT 5 cut(s) 95, 107, 149, 282, 666
MlyI GAGTC 2 cut(s) 278, 814
Mph1103I ATGCAT 3 cut(s) 22, 901, 960
MseI TTAA 2 cut(s) 717, 822
MspA1I CMGCKG 1 cut(s) 772
Mva1269I GAATGC 1 cut(s) 568
MvnI CGCG 1 cut(s) 763
MwoI GCNNNNNNNGC 4 cut(s) 262, 769, 875, 923
NcoI CCATGG 1 cut(s) 618
NdeII GATC 7 cut(s) 4, 58, 133, 214, 644, 817, 920
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 5 cut(s) 24, 527, 622, 799, 847
NlaIV GGNNCC 5 cut(s) 225, 646, 724, 768, 849
NmuCI GTSAC 1 cut(s) 907
NsiI ATGCAT 3 cut(s) 22, 901, 960
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 3 cut(s) 774, 794, 868
PleI GAGTC 2 cut(s) 277, 813
PpsI GAGTC 2 cut(s) 277, 813
Psp1406I AACGTT 1 cut(s) 636
PspN4I GGNNCC 5 cut(s) 225, 646, 724, 768, 849
PsuI RGATCY 4 cut(s) 133, 644, 817, 920
RsaI GTAC 3 cut(s) 246, 309, 516
RsaNI GTAC 3 cut(s) 245, 308, 515
SaqAI TTAA 2 cut(s) 717, 822
SatI GCNGC 3 cut(s) 773, 793, 867
Sau3AI GATC 7 cut(s) 4, 58, 133, 214, 644, 817, 920
SchI GAGTC 2 cut(s) 278, 814
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 4 cut(s) 265, 457, 474, 817
SmlI CTYRAG 2 cut(s) 54, 260
SmoI CTYRAG 2 cut(s) 54, 260
Sse9I AATT 5 cut(s) 95, 107, 149, 282, 666
SsiI CCGC 5 cut(s) 470, 566, 642, 763, 770
SspI AATATT 2 cut(s) 386, 889
SspMI CTAG 7 cut(s) 159, 456, 552, 776, 861, 873, 935
StyI CCWWGG 1 cut(s) 618
TaiI ACGT 1 cut(s) 639
TaqI TCGA 6 cut(s) 7, 61, 90, 531, 609, 961
TaqII GACCGA 1 cut(s) 934
TasI AATT 5 cut(s) 95, 107, 149, 282, 666
TatI WGTACW 2 cut(s) 244, 307
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 2 cut(s) 717, 822
Tru9I TTAA 2 cut(s) 717, 822
TseFI GTSAC 1 cut(s) 907
TseI GCWGC 3 cut(s) 772, 792, 866
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 4 cut(s) 345, 453, 493, 589
XagI CCTNNNNNAGG 1 cut(s) 408
XspI CTAG 7 cut(s) 159, 456, 552, 776, 861, 873, 935
Zsp2I ATGCAT 3 cut(s) 22, 901, 960
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.