Rroxscaffold_2G00119580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000195
Physical Location & Seq
Forward (+)
51463140 .. 51465512
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119580.1

Sequence Viewer

Length: 1062 bp
ATGGTTCCCGAAGCATATCCTCATGAGCAAGCATATGAGTCTAGGAAGCCTTCTCTTGAAGAAATACTAGCTCTATTGCAAGCCTCCCAAGCTCTATTGCAAACTTCTCAAGAAATGTTTATACATTCCAAACTTGAGGCTAGTCTTGCACAAGAGCTACCCTTCACCATTTATGAGCATGAATCTTTCTTTGACCAAGTGGAGCCTATTTCAAGAGAAGAAGTGTATATTAAGCATCTTGAGCAAGAGTCCTTTATGCAAGTTGAAGATGATGATAGTGATGTTGATGTACAAGAAAGTGAGTTTGGTTATGAAAGTTTCAATGCAAGTAGGGTGAGGATTACACTTCGGCGGAATGGGTGTAATATTGGAAATCTAAGCTTCCAAATGGAGGGGAAATATTCGAAGATGATTCCAAAGAAGATGATGTCTTGTCTAGTGAGGAGGATGCGGAATTCAAAGTCATACACCATAATCCTTTGTTCATTGAGAAGGATGCGGAGCTTCAAATCATACACCGTAATCCCTTATTCATTGAGGCCGATATTCACATGGAGGAAGATAGTTCTTCAATACTTTGTGATGATGAAGAAATTGAAGAGCCATCATGAGCTTCCCAAGATGGAGAGTAGAACATTGAGCACTTATGTTCTTAATGAGAAGATTGAGATTAAGGTACTTTTATCTCTCAATCCACCATTAAGTGGTCAATGTTTCTACAATAAGGTGATGGATTACAAACGAAGTGGAGCACTTGCACTCAACATTTCCAATTTTCAAGAGCTTTTACTGCCTATTGTTCCTAAAAGCATTATTTCTACACCATTTTTGAAGGAAAAGGCAAGGATATTGGCTCCTAGAAGAAAAATTGAGATGAAGGGGAAGATTAAGAAGCTTCATTTTCGGGAACCAATTGGAACATTCATGGATAGCTCTTGGTCTTGTCTCTATGATACATCAAAGAGTCCCTTAGCTCCAAACAATAGGGTGGTTCTTTCCAACCCCAATGACGAGACATGGACTGAACTTGTTGTGATTGTGGATAGATTGAGCATGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

41.18

Weight (kDa)

9.07

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 704
AciI CCGC 3 cut(s) 352, 451, 499
AcsI RAATTY 1 cut(s) 454
AfaI GTAC 2 cut(s) 291, 678
AfiI CCNNNNNNNGG 2 cut(s) 391, 704
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
Alw21I GWGCWC 2 cut(s) 644, 754
Alw26I GTCTC 2 cut(s) 950, 1007
AoxI GGCC 1 cut(s) 539
ApoI RAATTY 1 cut(s) 454
AsuHPI GGTGA 3 cut(s) 157, 346, 739
AsuII TTCGAA 1 cut(s) 404
Bbv12I GWGCWC 2 cut(s) 644, 754
BccI CCATC 3 cut(s) 612, 616, 724
BcoDI GTCTC 2 cut(s) 950, 1007
BfaI CTAG 6 cut(s) 42, 68, 141, 437, 858, 1060
BmiI GGNNCC 4 cut(s) 6, 204, 855, 909
BmsI GCATC 3 cut(s) 244, 438, 486
Bpu10I CCTNAGC 1 cut(s) 970
Bpu14I TTCGAA 1 cut(s) 404
BpuEI CTTGAG 3 cut(s) 93, 155, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 704
BseGI GGATG 2 cut(s) 453, 501
BseLI CCNNNNNNNGG 2 cut(s) 391, 704
BseRI GAGGAG 1 cut(s) 457
BshFI GGCC 1 cut(s) 541
BsiHKAI GWGCWC 2 cut(s) 644, 754
BslFI GGGAC 1 cut(s) 951
BslI CCNNNNNNNGG 2 cut(s) 391, 704
BsmAI GTCTC 2 cut(s) 950, 1007
BsmFI GGGAC 1 cut(s) 951
BsnI GGCC 1 cut(s) 541
Bsp119I TTCGAA 1 cut(s) 404
Bsp1286I GDGCHC 2 cut(s) 644, 754
Bsp1407I TGTACA 1 cut(s) 289
Bsp143I GATC 1 cut(s) 1056
BspACI CCGC 3 cut(s) 352, 451, 499
BspANI GGCC 1 cut(s) 541
BspHI TCATGA 2 cut(s) 22, 607
BspLI GGNNCC 4 cut(s) 6, 204, 855, 909
BspQI GCTCTTC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 404
BsrGI TGTACA 1 cut(s) 289
BssMI GATC 1 cut(s) 1056
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 1 cut(s) 593
BstAUI TGTACA 1 cut(s) 289
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 30, 81
BstDEI CTNAG 2 cut(s) 377, 970
BstF5I GGATG 2 cut(s) 453, 501
BstKTI GATC 1 cut(s) 1059
BstMAI GTCTC 2 cut(s) 950, 1007
BstMBI GATC 1 cut(s) 1056
BstMWI GCNNNNNNNGC 4 cut(s) 89, 146, 241, 790
BsuRI GGCC 1 cut(s) 541
BtsCI GGATG 2 cut(s) 453, 501
Cac8I GCNNGC 2 cut(s) 30, 81
CciI TCATGA 2 cut(s) 22, 607
Csp6I GTAC 2 cut(s) 290, 677
CspCI CAANNNNNGTGG 2 cut(s) 727, 762
CviAII CATG 7 cut(s) 23, 179, 552, 608, 925, 1017, 1054
CviQI GTAC 2 cut(s) 290, 677
DdeI CTNAG 2 cut(s) 377, 970
DpnI GATC 1 cut(s) 1058
DpnII GATC 1 cut(s) 1056
Eam1104I CTCTTC 1 cut(s) 593
EarI CTCTTC 1 cut(s) 593
EciI GGCGGA 1 cut(s) 367
EcoRI GAATTC 1 cut(s) 454
FaeI CATG 7 cut(s) 26, 182, 555, 611, 928, 1020, 1057
FalI AAGNNNNNCTT 2 cut(s) 953, 985
FaqI GGGAC 1 cut(s) 951
FatI CATG 7 cut(s) 22, 178, 551, 607, 924, 1016, 1053
FauNDI CATATG 1 cut(s) 34
FokI GGATG 2 cut(s) 460, 508
FspBI CTAG 6 cut(s) 42, 68, 141, 437, 858, 1060
HaeIII GGCC 1 cut(s) 541
Hin1II CATG 7 cut(s) 26, 182, 555, 611, 928, 1020, 1057
HindIII AAGCTT 2 cut(s) 379, 893
HinfI GANTC 5 cut(s) 38, 182, 248, 412, 964
HphI GGTGA 3 cut(s) 157, 346, 739
Hpy188III TCNNGA 9 cut(s) 8, 23, 56, 110, 213, 239, 608, 779, 905
HpyAV CCTTC 5 cut(s) 60, 172, 486, 826, 871
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4V TGCA 6 cut(s) 79, 100, 149, 259, 326, 758
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 146, 241, 790
HpyF3I CTNAG 2 cut(s) 377, 970
Hsp92II CATG 7 cut(s) 26, 182, 555, 611, 928, 1020, 1057
Kzo9I GATC 1 cut(s) 1056
LguI GCTCTTC 1 cut(s) 593
LmnI GCTCC 5 cut(s) 202, 501, 749, 859, 979
LweI GCATC 3 cut(s) 244, 438, 486
MaeI CTAG 6 cut(s) 42, 68, 141, 437, 858, 1060
MalI GATC 1 cut(s) 1058
MboI GATC 1 cut(s) 1056
MfeI CAATTG 1 cut(s) 912
MhlI GDGCHC 2 cut(s) 644, 754
MluCI AATT 5 cut(s) 454, 593, 772, 867, 912
MlyI GAGTC 3 cut(s) 47, 257, 973
MmeI TCCRAC 1 cut(s) 1023
MnlI CCTC 9 cut(s) 30, 94, 130, 330, 385, 435, 438, 531, 549
MseI TTAA 5 cut(s) 231, 654, 672, 701, 888
MunI CAATTG 1 cut(s) 912
MwoI GCNNNNNNNGC 4 cut(s) 89, 146, 241, 790
NdeI CATATG 1 cut(s) 34
NdeII GATC 1 cut(s) 1056
NlaIII CATG 7 cut(s) 26, 182, 555, 611, 928, 1020, 1057
NlaIV GGNNCC 4 cut(s) 6, 204, 855, 909
NspV TTCGAA 1 cut(s) 404
PagI TCATGA 2 cut(s) 22, 607
PciSI GCTCTTC 1 cut(s) 593
PfeI GAWTC 2 cut(s) 182, 412
PflMI CCANNNNNTGG 1 cut(s) 704
PleI GAGTC 3 cut(s) 46, 256, 972
PpsI GAGTC 3 cut(s) 46, 256, 972
PspN4I GGNNCC 4 cut(s) 6, 204, 855, 909
RsaI GTAC 2 cut(s) 291, 678
RsaNI GTAC 2 cut(s) 290, 677
SapI GCTCTTC 1 cut(s) 593
SaqAI TTAA 5 cut(s) 231, 654, 672, 701, 888
Sau3AI GATC 1 cut(s) 1056
SchI GAGTC 3 cut(s) 47, 257, 973
SduI GDGCHC 2 cut(s) 644, 754
SfaNI GCATC 3 cut(s) 244, 438, 486
SfuI TTCGAA 1 cut(s) 404
SmlI CTYRAG 3 cut(s) 108, 134, 239
SmoI CTYRAG 3 cut(s) 108, 134, 239
Sse9I AATT 5 cut(s) 454, 593, 772, 867, 912
SsiI CCGC 3 cut(s) 352, 451, 499
SspI AATATT 2 cut(s) 367, 401
SspMI CTAG 6 cut(s) 42, 68, 141, 437, 858, 1060
TaaI ACNGT 1 cut(s) 520
TaqI TCGA 1 cut(s) 404
TasI AATT 5 cut(s) 454, 593, 772, 867, 912
TatI WGTACW 1 cut(s) 289
TfiI GAWTC 2 cut(s) 182, 412
Tru1I TTAA 5 cut(s) 231, 654, 672, 701, 888
Tru9I TTAA 5 cut(s) 231, 654, 672, 701, 888
TspDTI ATGAA 8 cut(s) 195, 327, 474, 522, 602, 887, 890, 913
Van91I CCANNNNNTGG 1 cut(s) 704
XapI RAATTY 1 cut(s) 454
XspI CTAG 6 cut(s) 42, 68, 141, 437, 858, 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.