Rmu_sc0003072.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003072.1
OG0000195
Physical Location & Seq
Reverse (-)
30190 .. 31634
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003072.1_g000004.1.cds

Sequence Viewer

Length: 1191 bp
atggatgggaagatccgaggggatatgagcaagaaagtttctatggtggaggtcaacaagagtggaattctcatgcggactactagctcaattgcaagcttcgcaagctcccgagatcttttacatgcctctcaagctagaatttcacaagagaccatggttcccaaagcatatcctcatgagcaagtgtatgagtctaggaggccttctcttgaagaattgctagctcaattgcaagcttcccaagcccaattgcaagcctcacaagctcaattgcaagcttctcaagaaatgcttgcacattctaatgagcaacttgaagaaagttttgcacaagagccacccttcacaatttttcatgagccacctttcgccatttatgagcataagtctttctttgaccaagtggagcctatttcaagagaagaggtacatatcaagcatcttgagcaagagtcgtttatgcaagttgaagatgattatagtgatgttgatgtacaagaaagtgagtttggttatgaaagtttcaatgcaagtggggtgagagactacacttcggtggaatgggtacaatattggaaatctaagcttccaaatgaaggtgagatatttgaagatgattccgaagaagatgatgtcttgtctagtgaggaggatgcggagtttgaagttatacaccataatctcttgttcatcaaggaggatgcggagcttcaagtcatataccataatcctttattcatcgaggccgatgttcctgaggaggaagagagtccttcaatactttgtgatgatgaagaaattgaagagccaaggactttctcgcctcccaaatccatggagatccatcatgagcttcccaagattgagatcaaggtactcttaccactcaatccaccattaagtggccaatgtttctacaatgaggtgatggattggaaaggaaatggagcacttgcactcaccctttcccatcactctcaagagcttctaccaactattgttcctatgagcatcatttctacaccacctgagaaggagaaggcaagattggctcctataagaacaattacgaagaaaaggaagattaagaagcttcattttcgggaaccaattggaacattcatggataattcttggtcttgtctctatgatacatcaaggagtcccttagtgttggaaattttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

396

Amino Acids

45.44

Weight (kDa)

4.67

Isoelectric Point (pI)

66.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 905
AciI CCGC 3 cut(s) 76, 659, 707
AclWI GGATC 2 cut(s) 7, 838
AcoI YGGCCR 1 cut(s) 907
AcsI RAATTY 3 cut(s) 66, 141, 1182
AfaI GTAC 4 cut(s) 432, 498, 570, 879
AfiI CCNNNNNNNGG 2 cut(s) 599, 905
AjuI GAANNNNNNNTTGG 4 cut(s) 495, 527, 1034, 1066
AleI CACNNNNGTG 1 cut(s) 557
Alw21I GWGCWC 1 cut(s) 955
Alw26I GTCTC 3 cut(s) 146, 540, 1151
AlwI GGATC 2 cut(s) 7, 838
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 3 cut(s) 203, 747, 907
ApoI RAATTY 3 cut(s) 66, 141, 1182
AsuHPI GGTGA 4 cut(s) 553, 614, 940, 955
AsuNHI GCTAGC 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 111
AxyI CCTNAGG 1 cut(s) 759
BalI TGGCCA 1 cut(s) 909
Bbv12I GWGCWC 1 cut(s) 955
BccI CCATC 3 cut(s) 855, 925, 981
BcoDI GTCTC 3 cut(s) 146, 540, 1151
BfaI CTAG 5 cut(s) 84, 138, 198, 224, 645
BglII AGATCT 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 111
BmiI GGNNCC 4 cut(s) 162, 411, 1056, 1110
BmsI GCATC 4 cut(s) 451, 646, 694, 1023
BmtI GCTAGC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BpuEI CTTGAG 4 cut(s) 117, 270, 467, 966
BsaBI GATNNNNATC 1 cut(s) 869
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 4 cut(s) 16, 156, 812, 837
Bsc4I CCNNNNNNNGG 2 cut(s) 599, 905
Bse21I CCTNAGG 1 cut(s) 759
Bse8I GATNNNNATC 1 cut(s) 869
BseDI CCNNGG 4 cut(s) 16, 156, 812, 837
BseGI GGATG 3 cut(s) 10, 661, 709
BseJI GATNNNNATC 1 cut(s) 869
BseLI CCNNNNNNNGG 2 cut(s) 599, 905
BseMII CTCAG 2 cut(s) 750, 1023
BseRI GAGGAG 2 cut(s) 665, 776
BshFI GGCC 3 cut(s) 205, 749, 909
BsiHKAI GWGCWC 1 cut(s) 955
BsiHKCI CYCGRG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 1152
BslI CCNNNNNNNGG 2 cut(s) 599, 905
BsmAI GTCTC 3 cut(s) 146, 540, 1151
BsmFI GGGAC 1 cut(s) 1152
BsnI GGCC 3 cut(s) 205, 749, 909
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 955
Bsp1407I TGTACA 1 cut(s) 496
Bsp143I GATC 4 cut(s) 12, 115, 843, 870
Bsp19I CCATGG 2 cut(s) 156, 837
BspACI CCGC 3 cut(s) 76, 659, 707
BspANI GGCC 3 cut(s) 205, 749, 909
BspCNI CTCAG 2 cut(s) 751, 1024
BspHI TCATGA 3 cut(s) 178, 358, 850
BspLI GGNNCC 4 cut(s) 162, 411, 1056, 1110
BspOI GCTAGC 1 cut(s) 227
BspPI GGATC 2 cut(s) 7, 838
BspQI GCTCTTC 1 cut(s) 801
BspTNI GGTCTC 1 cut(s) 146
BsrGI TGTACA 1 cut(s) 496
BssECI CCNNGG 4 cut(s) 16, 156, 812, 837
BssMI GATC 4 cut(s) 12, 115, 843, 870
BssT1I CCWWGG 3 cut(s) 156, 812, 837
Bst6I CTCTTC 3 cut(s) 420, 762, 801
BstAUI TGTACA 1 cut(s) 496
BstC8I GCNNGC 7 cut(s) 97, 106, 225, 237, 258, 279, 297
BstDEI CTNAG 4 cut(s) 585, 759, 1032, 1171
BstDSI CCRYGG 2 cut(s) 156, 837
BstF5I GGATG 3 cut(s) 10, 661, 709
BstKTI GATC 4 cut(s) 15, 118, 846, 873
BstMAI GTCTC 3 cut(s) 146, 540, 1151
BstMBI GATC 4 cut(s) 12, 115, 843, 870
BstMWI GCNNNNNNNGC 7 cut(s) 101, 105, 134, 245, 266, 448, 1052
BstNSI RCATGY 1 cut(s) 128
BstX2I RGATCY 3 cut(s) 12, 115, 843
BstXI CCANNNNNNTGG 1 cut(s) 838
BstYI RGATCY 3 cut(s) 12, 115, 843
Bsu36I CCTNAGG 1 cut(s) 759
BsuRI GGCC 3 cut(s) 205, 749, 909
BtgI CCRYGG 2 cut(s) 156, 837
BtsCI GGATG 3 cut(s) 10, 661, 709
Cac8I GCNNGC 7 cut(s) 97, 106, 225, 237, 258, 279, 297
CciI TCATGA 3 cut(s) 178, 358, 850
Csp6I GTAC 4 cut(s) 431, 497, 569, 878
CspCI CAANNNNNGTGG 4 cut(s) 43, 78, 517, 552
CviAII CATG 8 cut(s) 73, 125, 157, 179, 359, 838, 851, 1126
CviQI GTAC 4 cut(s) 431, 497, 569, 878
DdeI CTNAG 4 cut(s) 585, 759, 1032, 1171
DpnI GATC 4 cut(s) 14, 117, 845, 872
DpnII GATC 4 cut(s) 12, 115, 843, 870
EaeI YGGCCR 1 cut(s) 907
Eam1104I CTCTTC 3 cut(s) 420, 762, 801
EarI CTCTTC 3 cut(s) 420, 762, 801
Eco130I CCWWGG 3 cut(s) 156, 812, 837
Eco147I AGGCCT 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 146
Eco81I CCTNAGG 1 cut(s) 759
Eco88I CYCGRG 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 66
EcoT14I CCWWGG 3 cut(s) 156, 812, 837
ErhI CCWWGG 3 cut(s) 156, 812, 837
FaeI CATG 8 cut(s) 76, 128, 160, 182, 362, 841, 854, 1129
FalI AAGNNNNNCTT 6 cut(s) 279, 311, 380, 412, 866, 898
FaqI GGGAC 1 cut(s) 1152
FatI CATG 8 cut(s) 72, 124, 156, 178, 358, 837, 850, 1125
FokI GGATG 3 cut(s) 17, 668, 716
FspBI CTAG 5 cut(s) 84, 138, 198, 224, 645
HaeIII GGCC 3 cut(s) 205, 749, 909
Hin1II CATG 8 cut(s) 76, 128, 160, 182, 362, 841, 854, 1129
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 5 cut(s) 97, 237, 279, 587, 1094
HinfI GANTC 5 cut(s) 194, 455, 620, 772, 1165
HphI GGTGA 4 cut(s) 553, 614, 940, 955
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 17, 625
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 6 cut(s) 216, 355, 593, 786, 1030, 1036
HpyCH4V TGCA 9 cut(s) 95, 235, 256, 277, 299, 332, 466, 533, 959
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 105, 134, 245, 266, 448, 1052
HpyF3I CTNAG 4 cut(s) 585, 759, 1032, 1171
Hsp92II CATG 8 cut(s) 76, 128, 160, 182, 362, 841, 854, 1129
Kzo9I GATC 4 cut(s) 12, 115, 843, 870
LguI GCTCTTC 1 cut(s) 801
LmnI GCTCC 5 cut(s) 113, 409, 709, 950, 1060
LpnPI CCDG 2 cut(s) 771, 1044
LweI GCATC 4 cut(s) 451, 646, 694, 1023
MaeI CTAG 5 cut(s) 84, 138, 198, 224, 645
MalI GATC 4 cut(s) 14, 117, 845, 872
MboI GATC 4 cut(s) 12, 115, 843, 870
MfeI CAATTG 5 cut(s) 90, 230, 251, 272, 1113
MflI RGATCY 3 cut(s) 12, 115, 843
MhlI GDGCHC 1 cut(s) 955
MlsI TGGCCA 1 cut(s) 909
MluNI TGGCCA 1 cut(s) 909
MlyI GAGTC 4 cut(s) 203, 464, 781, 1174
MmeI TCCRAC 1 cut(s) 1158
Mox20I TGGCCA 1 cut(s) 909
MscI TGGCCA 1 cut(s) 909
MseI TTAA 2 cut(s) 902, 1089
MslI CAYNNNNRTG 2 cut(s) 306, 557
Msp20I TGGCCA 1 cut(s) 909
MunI CAATTG 5 cut(s) 90, 230, 251, 272, 1113
MwoI GCNNNNNNNGC 7 cut(s) 101, 105, 134, 245, 266, 448, 1052
NcoI CCATGG 2 cut(s) 156, 837
NdeII GATC 4 cut(s) 12, 115, 843, 870
NheI GCTAGC 1 cut(s) 223
NlaIII CATG 8 cut(s) 76, 128, 160, 182, 362, 841, 854, 1129
NlaIV GGNNCC 4 cut(s) 162, 411, 1056, 1110
NspI RCATGY 1 cut(s) 128
OliI CACNNNNGTG 1 cut(s) 557
PagI TCATGA 3 cut(s) 178, 358, 850
PceI AGGCCT 1 cut(s) 205
PciSI GCTCTTC 1 cut(s) 801
PfeI GAWTC 1 cut(s) 620
PflMI CCANNNNNTGG 1 cut(s) 905
PleI GAGTC 4 cut(s) 202, 463, 780, 1173
PpsI GAGTC 4 cut(s) 202, 463, 780, 1173
PspN4I GGNNCC 4 cut(s) 162, 411, 1056, 1110
PsuI RGATCY 3 cut(s) 12, 115, 843
RsaI GTAC 4 cut(s) 432, 498, 570, 879
RsaNI GTAC 4 cut(s) 431, 497, 569, 878
RseI CAYNNNNRTG 2 cut(s) 306, 557
SapI GCTCTTC 1 cut(s) 801
SaqAI TTAA 2 cut(s) 902, 1089
Sau3AI GATC 4 cut(s) 12, 115, 843, 870
SchI GAGTC 4 cut(s) 203, 464, 781, 1174
SduI GDGCHC 1 cut(s) 955
SfaNI GCATC 4 cut(s) 451, 646, 694, 1023
SmiMI CAYNNNNRTG 2 cut(s) 306, 557
SmlI CTYRAG 4 cut(s) 132, 285, 446, 981
SmoI CTYRAG 4 cut(s) 132, 285, 446, 981
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 3 cut(s) 76, 659, 707
SspI AATATT 1 cut(s) 575
SspMI CTAG 5 cut(s) 84, 138, 198, 224, 645
StuI AGGCCT 1 cut(s) 205
StyI CCWWGG 3 cut(s) 156, 812, 837
TaqI TCGA 1 cut(s) 744
TatI WGTACW 1 cut(s) 496
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 2 cut(s) 902, 1089
Tru9I TTAA 2 cut(s) 902, 1089
TspDTI ATGAA 8 cut(s) 347, 534, 612, 682, 730, 810, 1088, 1114
Van91I CCANNNNNTGG 1 cut(s) 905
XapI RAATTY 3 cut(s) 66, 141, 1182
XceI RCATGY 1 cut(s) 128
XspI CTAG 5 cut(s) 84, 138, 198, 224, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.