Rmu_sc0002235.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002235.1
OG0000195
Physical Location & Seq
Forward (+)
30964 .. 32046
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002235.1_g000008.1.cds

Sequence Viewer

Length: 903 bp
atggatcgatggagctatggatgggatgatcttaggggatatgagcaacaaagtttctatagtggaggttatcaagaatggaatacatatgccgagagtcctatgccttgttacaaccaagcttgtgtctggtgtaattctccgtggcactcaccttttgaatgctctttgagatttgagtatccggattttatgcgagagtatgagtacaagatgggcatgtatcaagagacatttgtacccaaggcatatccacaagagcaagcttttgagcctaggaagccatcacttgaagaacaacttgctcaattggaagcctccaatgctcaattgcaagcctcccaagctcaatgtctagcctcccaagttcgattacaagctaaattggaagccttcaatgctcaattgcaagcttctcaagaaatcacttcacattccaatgagcaacatgagcctacaagtgggttgggagactacatttcagaggaattggtgcaatattggaaatctaatcttcacaatgaagaagagaaatatgaagatgattccgaagaagaggatggcttgtttagtgaggaggatgtggagcttgaaaacttacaccatattcccttaattgttgaggccgatattcccaaggaggaagaaattccttcaataccttgtgatgatgaagaaattgaagagccaaggactttctctcctcccacatccatggagatccatcatgagcttcccaaggtggagagtagaacgttgagcacttatgtacttaatgagaagattgagatcaaggtacttttacctctcaatccaccgtttagtgatcaatgtttctacagtgaggtgatgaattggaaagaaaatggagcacttgcactcaccctttctcatcactcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

34.99

Weight (kDa)

4.36

Isoelectric Point (pI)

71.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 184
AclI AACGTT 1 cut(s) 755
AclWI GGATC 2 cut(s) 12, 715
AcsI RAATTY 1 cut(s) 648
AfaI GTAC 4 cut(s) 209, 240, 771, 798
AfiI CCNNNNNNNGG 1 cut(s) 461
AgsI TTSAA 6 cut(s) 161, 293, 397, 593, 657, 683
AluBI AGCT 8 cut(s) 15, 122, 266, 347, 380, 413, 589, 733
AluI AGCT 8 cut(s) 15, 122, 266, 347, 380, 413, 589, 733
Alw21I GWGCWC 2 cut(s) 764, 874
Alw26I GTCTC 2 cut(s) 224, 465
AlwI GGATC 2 cut(s) 12, 715
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 1 cut(s) 624
ApoI RAATTY 1 cut(s) 648
Asp700I GAANNNNTTC 1 cut(s) 648
AspA2I CCTAGG 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 144, 859, 874
AvrII CCTAGG 1 cut(s) 275
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
Bbv12I GWGCWC 2 cut(s) 764, 874
BccI CCATC 6 cut(s) 3, 15, 208, 292, 554, 732
BciVI GTATCC 1 cut(s) 192
BclI TGATCA 1 cut(s) 826
BcoDI GTCTC 2 cut(s) 224, 465
BfaI CTAG 2 cut(s) 276, 356
BfmI CTRYAG 2 cut(s) 58, 838
BfuI GTATCC 1 cut(s) 192
BlnI CCTAGG 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 402
Bsa29I ATCGAT 1 cut(s) 7
BsaBI GATNNNNATC 1 cut(s) 788
BsaJI CCNNGG 7 cut(s) 143, 243, 275, 636, 689, 714, 738
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 685, 715
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse8I GATNNNNATC 1 cut(s) 788
BseAI TCCGGA 1 cut(s) 184
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 7 cut(s) 143, 243, 275, 636, 689, 714, 738
BseGI GGATG 5 cut(s) 26, 31, 565, 586, 710
BseJI GATNNNNATC 1 cut(s) 788
BseLI CCNNNNNNNGG 1 cut(s) 461
BseRI GAGGAG 2 cut(s) 590, 693
BshFI GGCC 1 cut(s) 626
BshVI ATCGAT 1 cut(s) 7
BsiHKAI GWGCWC 2 cut(s) 764, 874
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 461
BsmAI GTCTC 2 cut(s) 224, 465
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 1 cut(s) 626
Bsp1286I GDGCHC 2 cut(s) 764, 874
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 5 cut(s) 4, 28, 720, 789, 826
Bsp19I CCATGG 1 cut(s) 714
BspANI GGCC 1 cut(s) 626
BspDI ATCGAT 1 cut(s) 7
BspEI TCCGGA 1 cut(s) 184
BspHI TCATGA 1 cut(s) 727
BspPI GGATC 2 cut(s) 12, 715
BspQI GCTCTTC 1 cut(s) 678
BssECI CCNNGG 7 cut(s) 143, 243, 275, 636, 689, 714, 738
BssMI GATC 5 cut(s) 4, 28, 720, 789, 826
BssT1I CCWWGG 6 cut(s) 243, 275, 636, 689, 714, 738
Bst4CI ACNGT 2 cut(s) 819, 842
Bst6I CTCTTC 3 cut(s) 522, 549, 678
BstC8I GCNNGC 3 cut(s) 264, 336, 411
BstDEI CTNAG 1 cut(s) 32
BstDSI CCRYGG 2 cut(s) 143, 714
BstF5I GGATG 5 cut(s) 26, 31, 565, 586, 710
BstKTI GATC 5 cut(s) 7, 31, 723, 792, 829
BstMAI GTCTC 2 cut(s) 224, 465
BstMBI GATC 5 cut(s) 4, 28, 720, 789, 826
BstMWI GCNNNNNNNGC 5 cut(s) 280, 323, 344, 398, 451
BstNSI RCATGY 1 cut(s) 223
BstSFI CTRYAG 2 cut(s) 58, 838
BstX2I RGATCY 1 cut(s) 720
BstXI CCANNNNNNTGG 1 cut(s) 715
BstYI RGATCY 1 cut(s) 720
Bsu15I ATCGAT 1 cut(s) 7
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 626
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 2 cut(s) 143, 714
BtsCI GGATG 5 cut(s) 26, 31, 565, 586, 710
BtsIMutI CAGTG 1 cut(s) 847
Cac8I GCNNGC 3 cut(s) 264, 336, 411
CciI TCATGA 1 cut(s) 727
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 4 cut(s) 208, 239, 770, 797
CviAII CATG 4 cut(s) 220, 449, 715, 728
CviQI GTAC 4 cut(s) 208, 239, 770, 797
DdeI CTNAG 1 cut(s) 32
DpnI GATC 5 cut(s) 6, 30, 722, 791, 828
DpnII GATC 5 cut(s) 4, 28, 720, 789, 826
Eam1104I CTCTTC 3 cut(s) 522, 549, 678
EarI CTCTTC 3 cut(s) 522, 549, 678
Eco130I CCWWGG 6 cut(s) 243, 275, 636, 689, 714, 738
EcoT14I CCWWGG 6 cut(s) 243, 275, 636, 689, 714, 738
ErhI CCWWGG 6 cut(s) 243, 275, 636, 689, 714, 738
FaeI CATG 4 cut(s) 223, 452, 718, 731
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 4 cut(s) 219, 448, 714, 727
FauNDI CATATG 1 cut(s) 88
FbaI TGATCA 1 cut(s) 826
FokI GGATG 5 cut(s) 33, 38, 572, 593, 697
FspBI CTAG 2 cut(s) 276, 356
HaeIII GGCC 1 cut(s) 626
HapII CCGG 1 cut(s) 185
Hin1II CATG 4 cut(s) 223, 452, 718, 731
HindIII AAGCTT 3 cut(s) 120, 264, 411
HinfI GANTC 2 cut(s) 97, 545
HpaII CCGG 1 cut(s) 185
HphI GGTGA 3 cut(s) 144, 859, 874
Hpy188I TCNGA 2 cut(s) 484, 550
Hpy188III TCNNGA 5 cut(s) 74, 185, 227, 419, 728
HpyAV CCTTC 2 cut(s) 403, 663
HpyCH4III ACNGT 2 cut(s) 819, 842
HpyCH4IV ACGT 1 cut(s) 755
HpyCH4V TGCA 4 cut(s) 334, 409, 496, 878
HpyF10VI GCNNNNNNNGC 5 cut(s) 280, 323, 344, 398, 451
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 755
Hsp92II CATG 4 cut(s) 223, 452, 718, 731
Kpn2I TCCGGA 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 5 cut(s) 4, 28, 720, 789, 826
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 3 cut(s) 12, 586, 869
LpnPI CCDG 2 cut(s) 115, 198
MaeI CTAG 2 cut(s) 276, 356
MaeII ACGT 1 cut(s) 755
MaeIII GTNAC 1 cut(s) 110
MalI GATC 5 cut(s) 6, 30, 722, 791, 828
MboI GATC 5 cut(s) 4, 28, 720, 789, 826
MfeI CAATTG 3 cut(s) 308, 329, 404
MflI RGATCY 1 cut(s) 720
MhlI GDGCHC 2 cut(s) 764, 874
MlyI GAGTC 1 cut(s) 106
MroI TCCGGA 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 648
MseI TTAA 3 cut(s) 614, 774, 901
MslI CAYNNNNRTG 2 cut(s) 438, 713
MspI CCGG 1 cut(s) 185
MunI CAATTG 3 cut(s) 308, 329, 404
Mva1269I GAATGC 1 cut(s) 167
MwoI GCNNNNNNNGC 5 cut(s) 280, 323, 344, 398, 451
NcoI CCATGG 1 cut(s) 714
NdeI CATATG 1 cut(s) 88
NdeII GATC 5 cut(s) 4, 28, 720, 789, 826
NlaIII CATG 4 cut(s) 223, 452, 718, 731
NmeAIII GCCGAG 1 cut(s) 118
NspI RCATGY 1 cut(s) 223
PagI TCATGA 1 cut(s) 727
PciSI GCTCTTC 1 cut(s) 678
PctI GAATGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 648
PfeI GAWTC 1 cut(s) 545
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
Psp1406I AACGTT 1 cut(s) 755
PsuI RGATCY 1 cut(s) 720
RsaI GTAC 4 cut(s) 209, 240, 771, 798
RsaNI GTAC 4 cut(s) 208, 239, 770, 797
RseI CAYNNNNRTG 2 cut(s) 438, 713
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 3 cut(s) 614, 774, 901
Sau3AI GATC 5 cut(s) 4, 28, 720, 789, 826
SchI GAGTC 1 cut(s) 106
SduI GDGCHC 2 cut(s) 764, 874
SfcI CTRYAG 2 cut(s) 58, 838
SmiMI CAYNNNNRTG 2 cut(s) 438, 713
SmlI CTYRAG 1 cut(s) 417
SmoI CTYRAG 1 cut(s) 417
SspI AATATT 1 cut(s) 500
SspMI CTAG 2 cut(s) 276, 356
StyI CCWWGG 6 cut(s) 243, 275, 636, 689, 714, 738
TaaI ACNGT 2 cut(s) 819, 842
TaiI ACGT 1 cut(s) 758
TaqI TCGA 2 cut(s) 7, 370
TatI WGTACW 2 cut(s) 207, 769
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 3 cut(s) 614, 774, 901
Tru9I TTAA 3 cut(s) 614, 774, 901
TscAI CASTG 1 cut(s) 847
TspDTI ATGAA 4 cut(s) 537, 552, 687, 866
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 847
XapI RAATTY 1 cut(s) 648
XceI RCATGY 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 2 cut(s) 276, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.