Rmu_sc0009199.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009199.1
OG0000195
Physical Location & Seq
Forward (+)
23128 .. 24256
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009199.1_g000005.1.cds

Sequence Viewer

Length: 876 bp
atgcgagaatatgagtacaagatgggtatgtatgaagagacatttgtacccaaggcatatccacaagaacaagcttttgagcctaggaagccatcacttgaagaacaacttgctcaattggaagcctccaatgctcaattgcaagcctcccaagctcaatgtctagcctcccaagctcgattgcttgctaaattggaagccttcaatgctcaattgcaagcttctcaagaaatgacttcacattccaatgagcaacttgagtctaaagagaaatatgaagatgatttcgaagaagaggatagcttgtttagtgaggaggatgtggagcttgaagatttacaccatgatcccttaattgttgaggccgatattcccaaggaggaagaaagtccttcaataccttgtgatgatgaagaaattaaagagcctaggattttctctcctcccacatccacggagatccatcatgtgcttcccaaggtggagagtagaacattgaacacttatgtacttaatgagaagattgagatcaaggtacttttacctctcaatccaccatttagtgatcaatatttctacaatgaggtgatggattggaaaggaaatgaaacacttgtactcaccctttcccatcactctcaagagcttttaccacctattgttcctaagagcatcatttctacaccacttgagaaggagaaggcaaggtttgcccctagaagaaaaattgagaagaagaggaagattaagaagctacacttttggttaccaattggattattcatggatatctcttggtcttgcctctatgatacatcaaggagtctcttagccccaaacaatagggtggtcgcacttgagaagtatccaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.79

Weight (kDa)

4.88

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 341, 454
AfaI GTAC 5 cut(s) 17, 48, 510, 537, 618
AgsI TTSAA 5 cut(s) 101, 205, 332, 396, 499
AluBI AGCT 8 cut(s) 74, 155, 176, 221, 303, 328, 646, 754
AluI AGCT 8 cut(s) 74, 155, 176, 221, 303, 328, 646, 754
Alw26I GTCTC 2 cut(s) 32, 830
AlwI GGATC 2 cut(s) 341, 454
AoxI GGCC 1 cut(s) 363
AspA2I CCTAGG 2 cut(s) 83, 428
AsuHPI GGTGA 2 cut(s) 598, 613
AsuII TTCGAA 1 cut(s) 288
AvrII CCTAGG 2 cut(s) 83, 428
BaeI ACNNNNGTAYC 2 cut(s) 30, 63
BccI CCATC 5 cut(s) 16, 100, 471, 583, 639
BciVI GTATCC 1 cut(s) 876
BclI TGATCA 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 32, 830
BfaI CTAG 4 cut(s) 84, 164, 429, 717
BfuI GTATCC 1 cut(s) 876
BlnI CCTAGG 2 cut(s) 83, 428
BmsI GCATC 1 cut(s) 681
Bpu14I TTCGAA 1 cut(s) 288
BpuEI CTTGAG 4 cut(s) 210, 278, 624, 710
BsaBI GATNNNNATC 1 cut(s) 527
BsaJI CCNNGG 6 cut(s) 51, 83, 375, 428, 453, 477
Bse8I GATNNNNATC 1 cut(s) 527
BseDI CCNNGG 6 cut(s) 51, 83, 375, 428, 453, 477
BseGI GGATG 2 cut(s) 325, 449
BseJI GATNNNNATC 1 cut(s) 527
BseRI GAGGAG 2 cut(s) 329, 432
BshFI GGCC 1 cut(s) 365
BsmAI GTCTC 2 cut(s) 32, 830
BsnI GGCC 1 cut(s) 365
Bsp119I TTCGAA 1 cut(s) 288
Bsp143I GATC 4 cut(s) 346, 459, 528, 565
BspANI GGCC 1 cut(s) 365
BspPI GGATC 2 cut(s) 341, 454
BspT104I TTCGAA 1 cut(s) 288
BssECI CCNNGG 6 cut(s) 51, 83, 375, 428, 453, 477
BssMI GATC 4 cut(s) 346, 459, 528, 565
BssT1I CCWWGG 5 cut(s) 51, 83, 375, 428, 477
Bst6I CTCTTC 3 cut(s) 30, 288, 731
BstAPI GCANNNNNTGC 1 cut(s) 710
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 3 cut(s) 144, 186, 219
BstDEI CTNAG 2 cut(s) 666, 829
BstDSI CCRYGG 1 cut(s) 453
BstEII GGTNACC 1 cut(s) 765
BstF5I GGATG 2 cut(s) 325, 449
BstKTI GATC 4 cut(s) 349, 462, 531, 568
BstMAI GTCTC 2 cut(s) 32, 830
BstMBI GATC 4 cut(s) 346, 459, 528, 565
BstMWI GCNNNNNNNGC 6 cut(s) 88, 131, 152, 173, 206, 710
BstPI GGTNACC 1 cut(s) 765
BstX2I RGATCY 1 cut(s) 459
BstYI RGATCY 1 cut(s) 459
BsuI GTATCC 1 cut(s) 876
BsuRI GGCC 1 cut(s) 365
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 2 cut(s) 325, 449
Cac8I GCNNGC 3 cut(s) 144, 186, 219
Csp6I GTAC 5 cut(s) 16, 47, 509, 536, 617
CviAII CATG 3 cut(s) 344, 467, 784
CviQI GTAC 5 cut(s) 16, 47, 509, 536, 617
DdeI CTNAG 2 cut(s) 666, 829
DpnI GATC 4 cut(s) 348, 461, 530, 567
DpnII GATC 4 cut(s) 346, 459, 528, 565
Eam1104I CTCTTC 3 cut(s) 30, 288, 731
EarI CTCTTC 3 cut(s) 30, 288, 731
Eco130I CCWWGG 5 cut(s) 51, 83, 375, 428, 477
Eco32I GATATC 1 cut(s) 790
Eco91I GGTNACC 1 cut(s) 765
EcoO65I GGTNACC 1 cut(s) 765
EcoRV GATATC 1 cut(s) 790
EcoT14I CCWWGG 5 cut(s) 51, 83, 375, 428, 477
ErhI CCWWGG 5 cut(s) 51, 83, 375, 428, 477
FaeI CATG 3 cut(s) 347, 470, 787
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 743, 775
FatI CATG 3 cut(s) 343, 466, 783
FbaI TGATCA 1 cut(s) 565
FokI GGATG 2 cut(s) 332, 436
FspBI CTAG 4 cut(s) 84, 164, 429, 717
HaeIII GGCC 1 cut(s) 365
Hin1II CATG 3 cut(s) 347, 470, 787
HindIII AAGCTT 2 cut(s) 72, 219
HinfI GANTC 2 cut(s) 260, 823
HphI GGTGA 2 cut(s) 598, 613
Hpy188III TCNNGA 2 cut(s) 227, 641
HpyAV CCTTC 4 cut(s) 211, 402, 688, 694
HpyCH4V TGCA 2 cut(s) 142, 217
HpyF10VI GCNNNNNNNGC 6 cut(s) 88, 131, 152, 173, 206, 710
HpyF3I CTNAG 2 cut(s) 666, 829
Hsp92II CATG 3 cut(s) 347, 470, 787
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 4 cut(s) 346, 459, 528, 565
LmnI GCTCC 1 cut(s) 325
LweI GCATC 1 cut(s) 681
MaeI CTAG 4 cut(s) 84, 164, 429, 717
MaeIII GTNAC 1 cut(s) 765
MalI GATC 4 cut(s) 348, 461, 530, 567
MboI GATC 4 cut(s) 346, 459, 528, 565
MfeI CAATTG 4 cut(s) 116, 137, 212, 771
MflI RGATCY 1 cut(s) 459
MluCI AATT 8 cut(s) 116, 137, 191, 212, 354, 417, 726, 771
MlyI GAGTC 2 cut(s) 269, 832
MseI TTAA 4 cut(s) 353, 420, 513, 747
MslI CAYNNNNRTG 1 cut(s) 246
MunI CAATTG 4 cut(s) 116, 137, 212, 771
MwoI GCNNNNNNNGC 6 cut(s) 88, 131, 152, 173, 206, 710
NdeII GATC 4 cut(s) 346, 459, 528, 565
NlaIII CATG 3 cut(s) 347, 470, 787
NspV TTCGAA 1 cut(s) 288
PleI GAGTC 2 cut(s) 268, 831
PpsI GAGTC 2 cut(s) 268, 831
PspEI GGTNACC 1 cut(s) 765
PsuI RGATCY 1 cut(s) 459
RsaI GTAC 5 cut(s) 17, 48, 510, 537, 618
RsaNI GTAC 5 cut(s) 16, 47, 509, 536, 617
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 4 cut(s) 353, 420, 513, 747
Sau3AI GATC 4 cut(s) 346, 459, 528, 565
SchI GAGTC 2 cut(s) 269, 832
SfaNI GCATC 1 cut(s) 681
SfuI TTCGAA 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 5 cut(s) 225, 257, 639, 689, 857
SmoI CTYRAG 5 cut(s) 225, 257, 639, 689, 857
Sse9I AATT 8 cut(s) 116, 137, 191, 212, 354, 417, 726, 771
SspI AATATT 1 cut(s) 572
SspMI CTAG 4 cut(s) 84, 164, 429, 717
StyI CCWWGG 5 cut(s) 51, 83, 375, 428, 477
TaqI TCGA 2 cut(s) 178, 288
TasI AATT 8 cut(s) 116, 137, 191, 212, 354, 417, 726, 771
TatI WGTACW 3 cut(s) 15, 508, 616
Tru1I TTAA 4 cut(s) 353, 420, 513, 747
Tru9I TTAA 4 cut(s) 353, 420, 513, 747
TspDTI ATGAA 5 cut(s) 48, 291, 426, 621, 772
TspGWI ACGGA 1 cut(s) 470
XmaJI CCTAGG 2 cut(s) 83, 428
XspI CTAG 4 cut(s) 84, 164, 429, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.