RchiOBHm_Chr3g0452071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000195
Physical Location & Seq
Reverse (-)
2874696 .. 2876725
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41928

Sequence Viewer

Length: 891 bp
ATGCTTATACATTCCAACGAGCAACTTAAGGCTAGTCTTGCACAAGAGCCACCCTTCACCATTTATGAGCATGAATCTTTCTTTGACCAAGTGAAGCCTATTTCAAGAGAAAATGTACGTGTCAAACATCTTGAGCAAGAGTCGTTTATGCAAATTGAAGATGATTATAGTGATGTTGATGTACAAGAAATTGAGCTTGGTTATGAAAGTTCCAATGCAAGTGGGGTGAGAGACTACTCTTCGGCGGAATGGGTACAATCTAAGCTTCCAAATGAAGGGGAGATACTTGAAGATGATTCCGAAGAAGAGGATGGCTTGTCTAATGAGTCGGATGCGGAGTTTGAAGTCATACACCCTACTCCCTTATTCATTGAGGTCGATATTCCCATGGAGGAAGAGAGTCCTTCAATACCTTGTGATGATGAAGAAATTGAAGAGCCAAGGACTTTCTTGCCTCCCACATCCATGGAGATCCATCATGAGCTTCCCAAGGTGGATTGTAGAATATTGATCACTTATGTTATTCATGAGAGGATTGGGATCAAGGTACTTTTACCTCCTAATCCACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATAGATTGGAAAGGAAGTGAACCTCTTGCACTCGACCTTTCCCATCACTTGCAAGAGCTTCTACCACCTATTGTTTGTAAGGGCATTATTTCTATACCACTTGAGAAGGAGAAGGCAAGTATATTGGCTCCTAGAAGAAAAATGGAGAAGAATGGGAAGATTAAGAAGCTACACTTTTGGCCACCAATTGGAGTATTCTTATGTAGCTCTTGGTCTTGCCTCTATGATACATCAATGAGTCCCTTAGCCCCAAACAATAGGGTGGTCGTACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

33.82

Weight (kDa)

4.55

Isoelectric Point (pI)

58.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 575, 788
AciI CCGC 2 cut(s) 245, 335
AclWI GGATC 2 cut(s) 466, 548
AcoI YGGCCR 1 cut(s) 779
AfaI GTAC 5 cut(s) 117, 183, 255, 549, 870
AfiI CCNNNNNNNGG 3 cut(s) 275, 575, 788
AflII CTTAAG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 6 cut(s) 105, 158, 290, 344, 408, 434
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 6 cut(s) 196, 265, 484, 658, 769, 807
AluI AGCT 6 cut(s) 196, 265, 484, 658, 769, 807
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 2 cut(s) 466, 548
AoxI GGCC 1 cut(s) 779
AsuHPI GGTGA 3 cut(s) 49, 238, 610
BalI TGGCCA 1 cut(s) 781
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
BccI CCATC 3 cut(s) 305, 483, 651
BciVI GTATCC 1 cut(s) 891
BclI TGATCA 1 cut(s) 510
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 2 cut(s) 33, 732
BfrI CTTAAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 891
BmiI GGNNCC 1 cut(s) 729
BmsI GCATC 1 cut(s) 322
Bpu10I CCTNAGC 1 cut(s) 844
BpuEI CTTGAG 2 cut(s) 152, 722
BsaAI YACGTR 1 cut(s) 119
BsaBI GATNNNNATC 1 cut(s) 539
BsaJI CCNNGG 4 cut(s) 387, 440, 465, 489
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 575, 788
Bse8I GATNNNNATC 1 cut(s) 539
BseDI CCNNGG 4 cut(s) 387, 440, 465, 489
BseGI GGATG 3 cut(s) 316, 337, 461
BseJI GATNNNNATC 1 cut(s) 539
BseLI CCNNNNNNNGG 3 cut(s) 275, 575, 788
BshFI GGCC 1 cut(s) 781
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 3 cut(s) 275, 575, 788
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 825
BsnI GGCC 1 cut(s) 781
Bsp1407I TGTACA 1 cut(s) 181
Bsp143I GATC 3 cut(s) 471, 510, 540
Bsp19I CCATGG 2 cut(s) 387, 465
BspACI CCGC 2 cut(s) 245, 335
BspANI GGCC 1 cut(s) 781
BspHI TCATGA 2 cut(s) 478, 526
BspLI GGNNCC 1 cut(s) 729
BspPI GGATC 2 cut(s) 466, 548
BspQI GCTCTTC 1 cut(s) 429
BspTI CTTAAG 1 cut(s) 26
BsrGI TGTACA 1 cut(s) 181
BssECI CCNNGG 4 cut(s) 387, 440, 465, 489
BssMI GATC 3 cut(s) 471, 510, 540
BssT1I CCWWGG 4 cut(s) 387, 440, 465, 489
Bst6I CTCTTC 4 cut(s) 244, 300, 390, 429
BstAFI CTTAAG 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 181
BstBAI YACGTR 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 261, 844
BstDSI CCRYGG 2 cut(s) 387, 465
BstF5I GGATG 3 cut(s) 316, 337, 461
BstKTI GATC 3 cut(s) 474, 513, 543
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 3 cut(s) 471, 510, 540
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 471
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 1 cut(s) 471
BsuI GTATCC 1 cut(s) 891
BsuRI GGCC 1 cut(s) 781
BtgI CCRYGG 2 cut(s) 387, 465
BtsCI GGATG 3 cut(s) 316, 337, 461
CciI TCATGA 2 cut(s) 478, 526
Csp6I GTAC 5 cut(s) 116, 182, 254, 548, 869
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 5 cut(s) 71, 388, 466, 479, 527
CviQI GTAC 5 cut(s) 116, 182, 254, 548, 869
DdeI CTNAG 2 cut(s) 261, 844
DpnI GATC 3 cut(s) 473, 512, 542
DpnII GATC 3 cut(s) 471, 510, 540
EaeI YGGCCR 1 cut(s) 779
Eam1104I CTCTTC 4 cut(s) 244, 300, 390, 429
EarI CTCTTC 4 cut(s) 244, 300, 390, 429
EciI GGCGGA 1 cut(s) 260
Eco130I CCWWGG 4 cut(s) 387, 440, 465, 489
EcoT14I CCWWGG 4 cut(s) 387, 440, 465, 489
ErhI CCWWGG 4 cut(s) 387, 440, 465, 489
FaeI CATG 5 cut(s) 74, 391, 469, 482, 530
FalI AAGNNNNNCTT 2 cut(s) 758, 790
FaqI GGGAC 1 cut(s) 825
FatI CATG 5 cut(s) 70, 387, 465, 478, 526
FbaI TGATCA 1 cut(s) 510
FokI GGATG 3 cut(s) 323, 344, 448
FspBI CTAG 2 cut(s) 33, 732
HaeIII GGCC 1 cut(s) 781
Hin1II CATG 5 cut(s) 74, 391, 469, 482, 530
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 6 cut(s) 74, 140, 296, 326, 400, 838
HphI GGTGA 3 cut(s) 49, 238, 610
Hpy166II GTNNAC 1 cut(s) 620
Hpy188I TCNGA 2 cut(s) 301, 331
Hpy188III TCNNGA 4 cut(s) 105, 131, 479, 527
Hpy8I GTNNAC 1 cut(s) 620
HpyAV CCTTC 5 cut(s) 64, 269, 414, 700, 706
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 5 cut(s) 41, 151, 218, 629, 652
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 2 cut(s) 261, 844
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 5 cut(s) 74, 391, 469, 482, 530
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 3 cut(s) 471, 510, 540
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 1 cut(s) 733
LweI GCATC 1 cut(s) 322
MaeI CTAG 2 cut(s) 33, 732
MaeII ACGT 1 cut(s) 118
MalI GATC 3 cut(s) 473, 512, 542
MboI GATC 3 cut(s) 471, 510, 540
MfeI CAATTG 1 cut(s) 786
MflI RGATCY 1 cut(s) 471
MlsI TGGCCA 1 cut(s) 781
MluCI AATT 4 cut(s) 153, 189, 429, 786
MluNI TGGCCA 1 cut(s) 781
MlyI GAGTC 4 cut(s) 149, 335, 409, 847
MmeI TCCRAC 2 cut(s) 39, 309
MnlI CCTC 9 cut(s) 301, 367, 385, 465, 525, 567, 589, 633, 830
Mox20I TGGCCA 1 cut(s) 781
MscI TGGCCA 1 cut(s) 781
MseI TTAA 3 cut(s) 27, 572, 762
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 781
MspCI CTTAAG 1 cut(s) 26
MunI CAATTG 1 cut(s) 786
MwoI GCNNNNNNNGC 1 cut(s) 38
NcoI CCATGG 2 cut(s) 387, 465
NdeII GATC 3 cut(s) 471, 510, 540
NlaIII CATG 5 cut(s) 74, 391, 469, 482, 530
NlaIV GGNNCC 1 cut(s) 729
PagI TCATGA 2 cut(s) 478, 526
PciSI GCTCTTC 1 cut(s) 429
PfeI GAWTC 2 cut(s) 74, 296
PflMI CCANNNNNTGG 2 cut(s) 575, 788
PleI GAGTC 4 cut(s) 148, 334, 408, 846
PpsI GAGTC 4 cut(s) 148, 334, 408, 846
Ppu21I YACGTR 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 729
PsuI RGATCY 1 cut(s) 471
RsaI GTAC 5 cut(s) 117, 183, 255, 549, 870
RsaNI GTAC 5 cut(s) 116, 182, 254, 548, 869
RseI CAYNNNNRTG 1 cut(s) 464
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 3 cut(s) 27, 572, 762
Sau3AI GATC 3 cut(s) 471, 510, 540
SchI GAGTC 4 cut(s) 149, 335, 409, 847
SfaNI GCATC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 4 cut(s) 26, 131, 701, 872
SmoI CTYRAG 4 cut(s) 26, 131, 701, 872
Sse9I AATT 4 cut(s) 153, 189, 429, 786
SsiI CCGC 2 cut(s) 245, 335
SspI AATATT 1 cut(s) 507
SspMI CTAG 2 cut(s) 33, 732
StyI CCWWGG 4 cut(s) 387, 440, 465, 489
TaiI ACGT 1 cut(s) 121
TaqI TCGA 2 cut(s) 378, 633
TasI AATT 4 cut(s) 153, 189, 429, 786
TatI WGTACW 1 cut(s) 181
TfiI GAWTC 2 cut(s) 74, 296
Tru1I TTAA 3 cut(s) 27, 572, 762
Tru9I TTAA 3 cut(s) 27, 572, 762
TspDTI ATGAA 6 cut(s) 87, 219, 288, 358, 438, 515
Van91I CCANNNNNTGG 2 cut(s) 575, 788
Vha464I CTTAAG 1 cut(s) 26
XspI CTAG 2 cut(s) 33, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.