Rroxscaffold_7G00204410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000195
Physical Location & Seq
Forward (+)
53574235 .. 53577085
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00204410.1

Sequence Viewer

Length: 939 bp
ATGGCGTGCCGTGGAGGGCGGAAGGATGACGGTGGCGGTCCCGAGTCGGTGGAGGAGCGGCATTGTGGGTGGTCCGGCGGTGGTCGTAGCGGGATCGGCCGATGTTGGTCGGCGGCTCTTGACCTTCTTGTCCCCATGGTTGCTACTATGGATCTATGGAGCTATGGATGGGATGATCCTAGGGGATATGAGCAACAAAGTTATAATGGTGAAGGCTATCAAGAATGGAATACATATGTCGAGAGTCCTATGCCTTGTTACAACCAAGCTTGTGCCTTGTGTAATTCTCCGTGGCATTCACCATTTGAGTGTTCTTTGAGATTTGAATACCCGAATTTTATGCAAGAGTATGAGTGCAAGATGGGCATGTATCAAGAGACATTTGTACCCAAGGCATATCCACAAGAGCAAGCTTTTGAGCCTAGGAAGCCATCACTTGAAGAACAACTAACTCAATTGGAAGCCTCTAATGCTCAATTGCAAGCCTCCCAAGCTCAATGTCTAGCCTCCCAAGCTCGATTGCATGCTAAATTGGAAACCTTCAATGCTCAATTGCAAGCTTCTCAAGAAATGATTTCACATTCCAATGAACAACTTGAGCCTAGTTTTGCACAAGAGCCACCCTTCACCATTTCTCATGAGAAAGAGTCTCTCTTTGACCAAGTGGAGCCTTCTTTAAGAGGAGTGCATTATGAGCATCATGAGCAAGAATTGCCTATTCAAGATCGAGTGGGTGGTGTTCATATACAAGAAAGTGAGCTTAGTTATGAAAGTTCCAATGCAAGTAGGGTGAGAGACTACATTTCGGAGGAATCGGTGCAATATTGGAACTCTAATTTTCACAATGAAGAGGAGGTATATGAAGTTGATTCGAAGAAGAGAATAGCTTGTTTAGTGAGGAGGAGGCGGAGCTTGAAGAGCTACACCATGATTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

312

Amino Acids

35.87

Weight (kDa)

4.91

Isoelectric Point (pI)

73.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AasI GACNNNNNNGTC 1 cut(s) 128
AccBSI CCGCTC 1 cut(s) 58
AciI CCGC 7 cut(s) 19, 36, 58, 78, 90, 113, 907
AclWI GGATC 3 cut(s) 101, 159, 170
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 334
AfaI GTAC 1 cut(s) 387
AgsI TTSAA 5 cut(s) 326, 440, 544, 722, 916
Alw26I GTCTC 3 cut(s) 371, 654, 789
AlwI GGATC 3 cut(s) 101, 159, 170
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 334
AspA2I CCTAGG 2 cut(s) 179, 422
AspS9I GGNCC 2 cut(s) 38, 72
AsuHPI GGTGA 4 cut(s) 221, 291, 619, 802
AsuII TTCGAA 1 cut(s) 872
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 2 cut(s) 38, 72
AvrII CCTAGG 2 cut(s) 179, 422
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BccI CCATC 3 cut(s) 162, 355, 439
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BcoDI GTCTC 3 cut(s) 371, 654, 789
BfaI CTAG 4 cut(s) 180, 423, 503, 603
BisI GCNGC 2 cut(s) 59, 114
BlnI CCTAGG 2 cut(s) 179, 422
BlsI GCNGC 2 cut(s) 60, 115
Bme18I GGWCC 2 cut(s) 38, 72
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 2 cut(s) 38, 72
BmiI GGNNCC 2 cut(s) 40, 669
BmsI GCATC 1 cut(s) 706
Bpu14I TTCGAA 1 cut(s) 872
BpuEI CTTGAG 2 cut(s) 549, 617
BsaJI CCNNGG 6 cut(s) 10, 135, 179, 290, 390, 422
BseDI CCNNGG 6 cut(s) 10, 135, 179, 290, 390, 422
BseGI GGATG 3 cut(s) 31, 173, 178
BseRI GAGGAG 5 cut(s) 68, 696, 866, 913, 916
BseX3I CGGCCG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 2 cut(s) 24, 116
BsmAI GTCTC 3 cut(s) 371, 654, 789
BsmFI GGGAC 2 cut(s) 24, 116
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 872
Bsp143I GATC 4 cut(s) 93, 151, 175, 724
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 7 cut(s) 19, 36, 58, 78, 90, 113, 907
BspANI GGCC 1 cut(s) 99
BspHI TCATGA 2 cut(s) 637, 700
BspLI GGNNCC 2 cut(s) 40, 669
BspPI GGATC 3 cut(s) 101, 159, 170
BspQI GCTCTTC 1 cut(s) 911
BspT104I TTCGAA 1 cut(s) 872
BsrBI CCGCTC 1 cut(s) 58
BssECI CCNNGG 6 cut(s) 10, 135, 179, 290, 390, 422
BssMI GATC 4 cut(s) 93, 151, 175, 724
BssT1I CCWWGG 4 cut(s) 135, 179, 390, 422
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 3 cut(s) 843, 872, 911
BstAPI GCANNNNNTGC 1 cut(s) 712
BstBI TTCGAA 1 cut(s) 872
BstC8I GCNNGC 5 cut(s) 7, 411, 483, 525, 558
BstDEI CTNAG 1 cut(s) 761
BstDSI CCRYGG 3 cut(s) 10, 135, 290
BstF5I GGATG 3 cut(s) 31, 173, 178
BstKTI GATC 4 cut(s) 96, 154, 178, 727
BstMAI GTCTC 3 cut(s) 371, 654, 789
BstMBI GATC 4 cut(s) 93, 151, 175, 724
BstMCI CGRYCG 1 cut(s) 100
BstNSI RCATGY 2 cut(s) 370, 527
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BstZI CGGCCG 1 cut(s) 97
BsuRI GGCC 1 cut(s) 99
BtgI CCRYGG 3 cut(s) 10, 135, 290
BtsCI GGATG 3 cut(s) 31, 173, 178
Cac8I GCNNGC 5 cut(s) 7, 411, 483, 525, 558
CciI TCATGA 2 cut(s) 637, 700
Cfr13I GGNCC 2 cut(s) 38, 72
Csp6I GTAC 1 cut(s) 386
CviAII CATG 6 cut(s) 136, 367, 524, 638, 701, 928
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 1 cut(s) 761
DpnI GATC 4 cut(s) 95, 153, 177, 726
DpnII GATC 4 cut(s) 93, 151, 175, 724
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 97
EagI CGGCCG 1 cut(s) 97
Eam1104I CTCTTC 3 cut(s) 843, 872, 911
EarI CTCTTC 3 cut(s) 843, 872, 911
EciI GGCGGA 2 cut(s) 34, 922
EclXI CGGCCG 1 cut(s) 97
Eco130I CCWWGG 4 cut(s) 135, 179, 390, 422
Eco47I GGWCC 2 cut(s) 38, 72
Eco52I CGGCCG 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 41
EcoT14I CCWWGG 4 cut(s) 135, 179, 390, 422
ErhI CCWWGG 4 cut(s) 135, 179, 390, 422
FaeI CATG 6 cut(s) 139, 370, 527, 641, 704, 931
FaqI GGGAC 2 cut(s) 24, 116
FatI CATG 6 cut(s) 135, 366, 523, 637, 700, 927
FauI CCCGC 1 cut(s) 83
FauNDI CATATG 1 cut(s) 235
Fnu4HI GCNGC 2 cut(s) 59, 114
FokI GGATG 3 cut(s) 38, 180, 185
Fsp4HI GCNGC 2 cut(s) 59, 114
FspBI CTAG 4 cut(s) 180, 423, 503, 603
GluI GCNGC 2 cut(s) 59, 114
HaeIII GGCC 1 cut(s) 99
HapII CCGG 1 cut(s) 75
Hin1II CATG 6 cut(s) 139, 370, 527, 641, 704, 931
HindIII AAGCTT 3 cut(s) 267, 411, 558
HinfI GANTC 6 cut(s) 44, 244, 647, 812, 869, 931
HpaII CCGG 1 cut(s) 75
HphI GGTGA 4 cut(s) 221, 291, 619, 802
Hpy188I TCNGA 1 cut(s) 808
Hpy188III TCNNGA 9 cut(s) 41, 119, 221, 241, 374, 566, 638, 701, 722
HpyAV CCTTC 6 cut(s) 16, 134, 206, 550, 634, 681
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 9 cut(s) 343, 357, 481, 523, 556, 611, 688, 782, 820
HpyF3I CTNAG 1 cut(s) 761
Hsp92II CATG 6 cut(s) 139, 370, 527, 641, 704, 931
Kzo9I GATC 4 cut(s) 93, 151, 175, 724
LguI GCTCTTC 1 cut(s) 911
LmnI GCTCC 4 cut(s) 55, 159, 667, 909
LpnPI CCDG 1 cut(s) 88
LweI GCATC 1 cut(s) 706
MaeI CTAG 4 cut(s) 180, 423, 503, 603
MaeIII GTNAC 1 cut(s) 257
MalI GATC 4 cut(s) 95, 153, 177, 726
MbiI CCGCTC 1 cut(s) 58
MboI GATC 4 cut(s) 93, 151, 175, 724
MboII GAAGA 5 cut(s) 452, 860, 886, 889, 928
MfeI CAATTG 3 cut(s) 455, 476, 551
MflI RGATCY 1 cut(s) 151
MluCI AATT 8 cut(s) 283, 334, 455, 476, 530, 551, 710, 835
MlyI GAGTC 3 cut(s) 53, 253, 656
MseI TTAA 2 cut(s) 677, 937
MslI CAYNNNNRTG 2 cut(s) 307, 585
MspI CCGG 1 cut(s) 75
MunI CAATTG 3 cut(s) 455, 476, 551
Mva1269I GAATGC 1 cut(s) 295
NcoI CCATGG 1 cut(s) 135
NdeI CATATG 1 cut(s) 235
NdeII GATC 4 cut(s) 93, 151, 175, 724
NlaIII CATG 6 cut(s) 139, 370, 527, 641, 704, 931
NlaIV GGNNCC 2 cut(s) 40, 669
NspI RCATGY 2 cut(s) 370, 527
NspV TTCGAA 1 cut(s) 872
PaeI GCATGC 1 cut(s) 527
PagI TCATGA 2 cut(s) 637, 700
PciSI GCTCTTC 1 cut(s) 911
PctI GAATGC 1 cut(s) 295
PfeI GAWTC 3 cut(s) 812, 869, 931
PkrI GCNGC 2 cut(s) 60, 115
PleI GAGTC 3 cut(s) 52, 252, 655
PpsI GAGTC 3 cut(s) 52, 252, 655
PsiI TTATAA 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 40, 669
PspPI GGNCC 2 cut(s) 38, 72
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
RseI CAYNNNNRTG 2 cut(s) 307, 585
SapI GCTCTTC 1 cut(s) 911
SaqAI TTAA 2 cut(s) 677, 937
SatI GCNGC 2 cut(s) 59, 114
Sau3AI GATC 4 cut(s) 93, 151, 175, 724
Sau96I GGNCC 2 cut(s) 38, 72
SchI GAGTC 3 cut(s) 53, 253, 656
SfaNI GCATC 1 cut(s) 706
SfuI TTCGAA 1 cut(s) 872
SinI GGWCC 2 cut(s) 38, 72
SmiMI CAYNNNNRTG 2 cut(s) 307, 585
SmlI CTYRAG 2 cut(s) 564, 596
SmoI CTYRAG 2 cut(s) 564, 596
SphI GCATGC 1 cut(s) 527
Sse9I AATT 8 cut(s) 283, 334, 455, 476, 530, 551, 710, 835
SsiI CCGC 7 cut(s) 19, 36, 58, 78, 90, 113, 907
SspI AATATT 1 cut(s) 824
SspMI CTAG 4 cut(s) 180, 423, 503, 603
StyI CCWWGG 4 cut(s) 135, 179, 390, 422
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 4 cut(s) 240, 517, 727, 872
TasI AATT 8 cut(s) 283, 334, 455, 476, 530, 551, 710, 835
TauI GCSGC 2 cut(s) 61, 116
TfiI GAWTC 3 cut(s) 812, 869, 931
Tru1I TTAA 2 cut(s) 677, 937
Tru9I TTAA 2 cut(s) 677, 937
TspDTI ATGAA 5 cut(s) 603, 731, 783, 861, 876
TspGWI ACGGA 1 cut(s) 279
VpaK11BI GGWCC 2 cut(s) 38, 72
XapI RAATTY 1 cut(s) 334
XceI RCATGY 2 cut(s) 370, 527
XmaJI CCTAGG 2 cut(s) 179, 422
XspI CTAG 4 cut(s) 180, 423, 503, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.