Rw6G011280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000195
Physical Location & Seq
Reverse (-)
19804991 .. 19805476
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G011280.1

Sequence Viewer

Length: 486 bp
ATGGATCAATGGAGCTATGGATGGGAAGATCCGAGGGGATATGAGCGAGAAAGTTTTTATGGTGGAGGTCATGAAGAGTGGAATTCTCATGCGGTGGATTCTATGTCCCCTTACAATAAAACTTGTGCTTTGTGTAATTCTCCGTGGCATTCACCTTTTGAGTGCCCGGATTTTATGCAAGAGTGTGAGTACAAGATGGACATGTATCAAGAGACATTTGTACCCAATGCATATCCACAAGATGAAGCTTATGAGCCTAGGAAGGAATTCGTTGAAGCACTACTAGCTCAATTGCAAGCCTCCCGAGATCTATTACAAGCCTCTCAAGCTAGAATTTCACAAGATACCATGGTTCCTGAAGCATATCCTCATGAGCAAGTGTATGAATCTAGGAGGCCTTCTCTTGAAGAATTGCTAGCTCAATTGCAATTATCCCAAGCTCGATTGCAAGCTTCTCAAGAAATGCTTATACATTCCAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.86

Weight (kDa)

4.5

Isoelectric Point (pI)

76.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AclWI GGATC 2 cut(s) 12, 23
AcsI RAATTY 3 cut(s) 82, 266, 333
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 2 cut(s) 191, 222
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 2 cut(s) 275, 407
AluBI AGCT 7 cut(s) 15, 248, 287, 329, 419, 440, 452
AluI AGCT 7 cut(s) 15, 248, 287, 329, 419, 440, 452
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 2 cut(s) 12, 23
Ama87I CYCGRG 1 cut(s) 303
AoxI GGCC 1 cut(s) 395
ApoI RAATTY 3 cut(s) 82, 266, 333
Asp700I GAANNNNTTC 1 cut(s) 266
AspA2I CCTAGG 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 144
AsuNHI GCTAGC 1 cut(s) 415
AvaI CYCGRG 1 cut(s) 303
AvrII CCTAGG 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 167
BaeI ACNNNNGTAYC 4 cut(s) 204, 237, 336, 369
BccI CCATC 2 cut(s) 15, 190
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 5 cut(s) 258, 284, 330, 390, 416
BglII AGATCT 1 cut(s) 307
BlnI CCTAGG 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 303
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 167
BmtI GCTAGC 1 cut(s) 419
BplI GAGNNNNNCTC 2 cut(s) 385, 417
BpuEI CTTGAG 2 cut(s) 309, 441
BpuMI CCSGG 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 32, 143, 257, 348
BseDI CCNNGG 4 cut(s) 32, 143, 257, 348
BseGI GGATG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 167
BshFI GGCC 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 1 cut(s) 397
BsoBI CYCGRG 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 3 cut(s) 4, 28, 307
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 397
BspHI TCATGA 2 cut(s) 70, 370
BspLI GGNNCC 1 cut(s) 354
BspOI GCTAGC 1 cut(s) 419
BspPI GGATC 2 cut(s) 12, 23
BssECI CCNNGG 4 cut(s) 32, 143, 257, 348
BssMI GATC 3 cut(s) 4, 28, 307
BssT1I CCWWGG 2 cut(s) 257, 348
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 3 cut(s) 297, 417, 450
BstDSI CCRYGG 2 cut(s) 143, 348
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 3 cut(s) 7, 31, 310
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 3 cut(s) 4, 28, 307
BstMWI GCNNNNNNNGC 2 cut(s) 284, 326
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 167
BstX2I RGATCY 2 cut(s) 28, 307
BstYI RGATCY 2 cut(s) 28, 307
BsuRI GGCC 1 cut(s) 397
BtgI CCRYGG 2 cut(s) 143, 348
BtsCI GGATG 1 cut(s) 26
Cac8I GCNNGC 3 cut(s) 297, 417, 450
CciI TCATGA 2 cut(s) 70, 370
Csp6I GTAC 2 cut(s) 190, 221
CviAII CATG 5 cut(s) 71, 89, 202, 349, 371
CviQI GTAC 2 cut(s) 190, 221
DpnI GATC 3 cut(s) 6, 30, 309
DpnII GATC 3 cut(s) 4, 28, 307
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 257, 348
Eco147I AGGCCT 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 303
EcoRI GAATTC 2 cut(s) 82, 266
EcoT14I CCWWGG 2 cut(s) 257, 348
EcoT22I ATGCAT 1 cut(s) 232
ErhI CCWWGG 2 cut(s) 257, 348
FaeI CATG 5 cut(s) 74, 92, 205, 352, 374
FalI AAGNNNNNCTT 2 cut(s) 450, 482
FaqI GGGAC 1 cut(s) 91
FatI CATG 5 cut(s) 70, 88, 201, 348, 370
FokI GGATG 1 cut(s) 33
FspBI CTAG 5 cut(s) 258, 284, 330, 390, 416
HaeIII GGCC 1 cut(s) 397
HapII CCGG 1 cut(s) 167
Hin1II CATG 5 cut(s) 74, 92, 205, 352, 374
HindIII AAGCTT 2 cut(s) 246, 450
HinfI GANTC 2 cut(s) 98, 386
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 7 cut(s) 71, 209, 303, 356, 371, 404, 458
HpyAV CCTTC 2 cut(s) 256, 408
HpyCH4V TGCA 5 cut(s) 178, 230, 295, 427, 448
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 326
Hsp92II CATG 5 cut(s) 74, 92, 205, 352, 374
Kzo9I GATC 3 cut(s) 4, 28, 307
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 2 cut(s) 180, 369
MaeI CTAG 5 cut(s) 258, 284, 330, 390, 416
MalI GATC 3 cut(s) 6, 30, 309
MboI GATC 3 cut(s) 4, 28, 307
MboII GAAGA 3 cut(s) 38, 86, 419
MfeI CAATTG 2 cut(s) 290, 422
MflI RGATCY 2 cut(s) 28, 307
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 8 cut(s) 82, 136, 266, 290, 333, 410, 422, 428
MnlI CCTC 6 cut(s) 27, 59, 310, 331, 378, 387
Mph1103I ATGCAT 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 477
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 167
MunI CAATTG 2 cut(s) 290, 422
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 2 cut(s) 284, 326
NciI CCSGG 1 cut(s) 167
NcoI CCATGG 1 cut(s) 348
NdeII GATC 3 cut(s) 4, 28, 307
NheI GCTAGC 1 cut(s) 415
NlaIII CATG 5 cut(s) 74, 92, 205, 352, 374
NlaIV GGNNCC 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 232
NspI RCATGY 1 cut(s) 205
PagI TCATGA 2 cut(s) 70, 370
PceI AGGCCT 1 cut(s) 397
PciI ACATGT 1 cut(s) 201
PctI GAATGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 2 cut(s) 98, 386
PscI ACATGT 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 354
PsuI RGATCY 2 cut(s) 28, 307
RsaI GTAC 2 cut(s) 191, 222
RsaNI GTAC 2 cut(s) 190, 221
RseI CAYNNNNRTG 1 cut(s) 477
Sau3AI GATC 3 cut(s) 4, 28, 307
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 167
SetI ASST 9 cut(s) 17, 70, 157, 250, 289, 331, 421, 442, 454
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 2 cut(s) 324, 456
SmoI CTYRAG 2 cut(s) 324, 456
Sse9I AATT 8 cut(s) 82, 136, 266, 290, 333, 410, 422, 428
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 1 cut(s) 92
SspMI CTAG 5 cut(s) 258, 284, 330, 390, 416
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 2 cut(s) 257, 348
TaqI TCGA 1 cut(s) 442
TasI AATT 8 cut(s) 82, 136, 266, 290, 333, 410, 422, 428
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 2 cut(s) 98, 386
TspDTI ATGAA 3 cut(s) 87, 258, 399
TspGWI ACGGA 1 cut(s) 132
XapI RAATTY 3 cut(s) 82, 266, 333
XceI RCATGY 1 cut(s) 205
XmaJI CCTAGG 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 5 cut(s) 258, 284, 330, 390, 416
Zsp2I ATGCAT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.