Rmu_sc0003776.1_g000028

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003776.1
OG0000195
Physical Location & Seq
Forward (+)
144026 .. 145273
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003776.1_g000028.1.cds

Sequence Viewer

Length: 1248 bp
atgagatttgaatgcccaaattttatgcaagagcgtgagtacatgtatcaagagacatttgtactcgacgtatatccacaaaatgaagcttacgagcctaggaaggaattcgttgaaggactactagctcaattgcaagcctcccgatatctattacaagcctctcaagctagaatttcacaagataccatggttcccaaagcatatcctcatgagcaagtgtatgagtctaggaggccttctcttgaagaattgctagctcaattgcaagcgtcccaagatctattgcaagcttgtcaagcaatacttctacataccaatgagcaacttgagactagtcttgcacaagagccacccttcaccatttatgagcatgaatctttctttgaccaagtggagcctatttcaagagaagaagtgtatatcaagcatcttgagcaagactcctttatgcaagttgaaaatgatgatagtgatgttgatgtacaagaaattgagcttggttatgaaagtttcaatgcaagtgaggtgagagactacaattcggaggaatgggtgcaatattggaaatctaagcttccaaatggaggagagatatttgaagatgattccgaagaagaggatgtcttgtctagtgaggaggatgcggagcttaaagttatacaccataatctcttgttcatcgaggaggatgcggagcttccagtcacataccataatactttattcattgaggtcaatgttcccaaggaggaagagagtccttcaatactttgtgatggtcaagaaattgaagagccaaggactttcttgcctcccacatccatggagatacatcatgagtttcccaaggtggattgtagaatattgagcacttatgttcttaatgagaggattgggatcaaggtacttttacctcccaatccaccattaagtgctcaatgtttctacaatgaggtgatggattggaaaggaaatggagcacttgcactcaccctttcccatcactctcaagagcttctaccacctattgttcttatgagcatcatttctacaccacttgagaaggagaaggcaaggatagctcctagaagaaaaattgagaagaagaggaagattaagaagctacacttttatttaccaattggattattcttggatagctcttggtctttcctctatgatatgtcaaggagtcccttagccccaaacaatagggtggtcatacttgagaagtatccaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

48.39

Weight (kDa)

4.62

Isoelectric Point (pI)

68.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 647, 695
AclWI GGATC 1 cut(s) 908
AcsI RAATTY 3 cut(s) 19, 107, 174
AfaI GTAC 4 cut(s) 41, 63, 486, 909
AfiI CCNNNNNNNGG 1 cut(s) 587
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 9 cut(s) 11, 116, 248, 408, 461, 517, 602, 768, 794
AhlI ACTAGT 1 cut(s) 335
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
Alw21I GWGCWC 3 cut(s) 875, 940, 985
Alw26I GTCTC 3 cut(s) 47, 326, 528
AlwI GGATC 1 cut(s) 908
AoxI GGCC 1 cut(s) 236
ApoI RAATTY 3 cut(s) 19, 107, 174
Asp700I GAANNNNTTC 1 cut(s) 107
AspA2I CCTAGG 1 cut(s) 98
AsuHPI GGTGA 4 cut(s) 352, 541, 970, 985
AsuNHI GCTAGC 1 cut(s) 256
AvrII CCTAGG 1 cut(s) 98
BaeI ACNNNNGTAYC 2 cut(s) 177, 210
Bbv12I GWGCWC 3 cut(s) 875, 940, 985
BccI CCATC 3 cut(s) 773, 955, 1011
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BciVI GTATCC 1 cut(s) 1248
BcoDI GTCTC 3 cut(s) 47, 326, 528
BcuI ACTAGT 1 cut(s) 335
BfaI CTAG 8 cut(s) 99, 125, 171, 231, 257, 336, 633, 1089
BfuI GTATCC 1 cut(s) 1248
BglII AGATCT 1 cut(s) 280
BlnI CCTAGG 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 195, 399
BmsI GCATC 4 cut(s) 439, 634, 682, 1053
BmtI GCTAGC 1 cut(s) 260
BplI GAGNNNNNCTC 4 cut(s) 226, 258, 428, 460
Bpu10I CCTNAGC 1 cut(s) 1201
BpuEI CTTGAG 5 cut(s) 150, 350, 455, 996, 1082
BsaBI GATNNNNATC 1 cut(s) 899
BsaJI CCNNGG 6 cut(s) 98, 189, 747, 800, 825, 849
Bsc4I CCNNNNNNNGG 1 cut(s) 587
Bse1I ACTGG 1 cut(s) 704
Bse8I GATNNNNATC 1 cut(s) 899
BseDI CCNNGG 6 cut(s) 98, 189, 747, 800, 825, 849
BseGI GGATG 4 cut(s) 628, 649, 697, 821
BseJI GATNNNNATC 1 cut(s) 899
BseLI CCNNNNNNNGG 1 cut(s) 587
BseNI ACTGG 1 cut(s) 704
BseRI GAGGAG 3 cut(s) 603, 653, 701
BshFI GGCC 1 cut(s) 238
BsiHKAI GWGCWC 3 cut(s) 875, 940, 985
BslFI GGGAC 2 cut(s) 259, 1182
BslI CCNNNNNNNGG 1 cut(s) 587
BsmAI GTCTC 3 cut(s) 47, 326, 528
BsmFI GGGAC 2 cut(s) 259, 1182
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 1 cut(s) 238
Bsp1286I GDGCHC 3 cut(s) 875, 940, 985
Bsp1407I TGTACA 1 cut(s) 484
Bsp143I GATC 2 cut(s) 280, 900
Bsp19I CCATGG 2 cut(s) 189, 825
BspACI CCGC 2 cut(s) 647, 695
BspANI GGCC 1 cut(s) 238
BspHI TCATGA 2 cut(s) 211, 838
BspLI GGNNCC 2 cut(s) 195, 399
BspOI GCTAGC 1 cut(s) 260
BspPI GGATC 1 cut(s) 908
BspQI GCTCTTC 1 cut(s) 789
BsrGI TGTACA 1 cut(s) 484
BsrI ACTGG 1 cut(s) 704
BssECI CCNNGG 6 cut(s) 98, 189, 747, 800, 825, 849
BssMI GATC 2 cut(s) 280, 900
BssT1I CCWWGG 6 cut(s) 98, 189, 747, 800, 825, 849
Bst6I CTCTTC 4 cut(s) 612, 750, 789, 1103
BstAUI TGTACA 1 cut(s) 484
BstC8I GCNNGC 4 cut(s) 138, 258, 270, 291
BstDEI CTNAG 2 cut(s) 573, 1201
BstDSI CCRYGG 2 cut(s) 189, 825
BstF5I GGATG 4 cut(s) 628, 649, 697, 821
BstKTI GATC 2 cut(s) 283, 903
BstMAI GTCTC 3 cut(s) 47, 326, 528
BstMBI GATC 2 cut(s) 280, 900
BstMWI GCNNNNNNNGC 4 cut(s) 167, 299, 436, 1082
BstNSI RCATGY 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 280
BstXI CCANNNNNNTGG 1 cut(s) 826
BstYI RGATCY 1 cut(s) 280
BsuI GTATCC 1 cut(s) 1248
BsuRI GGCC 1 cut(s) 238
BtgI CCRYGG 2 cut(s) 189, 825
BtsCI GGATG 4 cut(s) 628, 649, 697, 821
Cac8I GCNNGC 4 cut(s) 138, 258, 270, 291
CciI TCATGA 2 cut(s) 211, 838
CseI GACGC 1 cut(s) 261
Csp6I GTAC 4 cut(s) 40, 62, 485, 908
CviAII CATG 6 cut(s) 43, 190, 212, 374, 826, 839
CviQI GTAC 4 cut(s) 40, 62, 485, 908
DdeI CTNAG 2 cut(s) 573, 1201
DpnI GATC 2 cut(s) 282, 902
DpnII GATC 2 cut(s) 280, 900
Eam1104I CTCTTC 4 cut(s) 612, 750, 789, 1103
EarI CTCTTC 4 cut(s) 612, 750, 789, 1103
Eco130I CCWWGG 6 cut(s) 98, 189, 747, 800, 825, 849
Eco147I AGGCCT 1 cut(s) 238
Eco32I GATATC 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 107
EcoRV GATATC 1 cut(s) 149
EcoT14I CCWWGG 6 cut(s) 98, 189, 747, 800, 825, 849
ErhI CCWWGG 6 cut(s) 98, 189, 747, 800, 825, 849
FaeI CATG 6 cut(s) 46, 193, 215, 377, 829, 842
FalI AAGNNNNNCTT 4 cut(s) 291, 323, 1115, 1147
FaqI GGGAC 2 cut(s) 259, 1182
FatI CATG 6 cut(s) 42, 189, 211, 373, 825, 838
FokI GGATG 4 cut(s) 635, 656, 704, 808
FspBI CTAG 8 cut(s) 99, 125, 171, 231, 257, 336, 633, 1089
HaeIII GGCC 1 cut(s) 238
HgaI GACGC 1 cut(s) 261
Hin1II CATG 6 cut(s) 46, 193, 215, 377, 829, 842
HindIII AAGCTT 3 cut(s) 87, 291, 575
HinfI GANTC 6 cut(s) 227, 377, 443, 608, 760, 1195
HphI GGTGA 4 cut(s) 352, 541, 970, 985
Hpy188I TCNGA 2 cut(s) 547, 613
Hpy188III TCNNGA 9 cut(s) 50, 144, 212, 245, 408, 434, 785, 839, 1013
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 7 cut(s) 97, 110, 249, 367, 774, 1060, 1066
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 9 cut(s) 28, 136, 268, 289, 344, 454, 521, 559, 989
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 299, 436, 1082
HpyF3I CTNAG 2 cut(s) 573, 1201
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 6 cut(s) 46, 193, 215, 377, 829, 842
Kzo9I GATC 2 cut(s) 280, 900
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 5 cut(s) 397, 649, 697, 980, 1090
LpnPI CCDG 1 cut(s) 717
LweI GCATC 4 cut(s) 439, 634, 682, 1053
MaeI CTAG 8 cut(s) 99, 125, 171, 231, 257, 336, 633, 1089
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 706
MalI GATC 2 cut(s) 282, 902
MboI GATC 2 cut(s) 280, 900
MfeI CAATTG 3 cut(s) 131, 263, 1143
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 3 cut(s) 875, 940, 985
MlyI GAGTC 4 cut(s) 236, 437, 769, 1204
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 4 cut(s) 654, 885, 932, 1119
MslI CAYNNNNRTG 2 cut(s) 318, 824
MunI CAATTG 3 cut(s) 131, 263, 1143
Mva1269I GAATGC 1 cut(s) 17
MwoI GCNNNNNNNGC 4 cut(s) 167, 299, 436, 1082
NcoI CCATGG 2 cut(s) 189, 825
NdeII GATC 2 cut(s) 280, 900
NheI GCTAGC 1 cut(s) 256
NlaIII CATG 6 cut(s) 46, 193, 215, 377, 829, 842
NlaIV GGNNCC 2 cut(s) 195, 399
NmuCI GTSAC 1 cut(s) 706
NspI RCATGY 1 cut(s) 46
PagI TCATGA 2 cut(s) 211, 838
PceI AGGCCT 1 cut(s) 238
PciI ACATGT 1 cut(s) 42
PciSI GCTCTTC 1 cut(s) 789
PctI GAATGC 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 377, 608
PleI GAGTC 4 cut(s) 235, 437, 768, 1203
PpsI GAGTC 4 cut(s) 235, 437, 768, 1203
PscI ACATGT 1 cut(s) 42
PspN4I GGNNCC 2 cut(s) 195, 399
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 4 cut(s) 41, 63, 486, 909
RsaNI GTAC 4 cut(s) 40, 62, 485, 908
RseI CAYNNNNRTG 2 cut(s) 318, 824
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 4 cut(s) 654, 885, 932, 1119
Sau3AI GATC 2 cut(s) 280, 900
SchI GAGTC 4 cut(s) 236, 437, 769, 1204
SduI GDGCHC 3 cut(s) 875, 940, 985
SfaNI GCATC 4 cut(s) 439, 634, 682, 1053
SmiMI CAYNNNNRTG 2 cut(s) 318, 824
SmlI CTYRAG 6 cut(s) 165, 329, 434, 1011, 1061, 1229
SmoI CTYRAG 6 cut(s) 165, 329, 434, 1011, 1061, 1229
SpeI ACTAGT 1 cut(s) 335
SseBI AGGCCT 1 cut(s) 238
SsiI CCGC 2 cut(s) 647, 695
SspI AATATT 2 cut(s) 563, 867
SspMI CTAG 8 cut(s) 99, 125, 171, 231, 257, 336, 633, 1089
StuI AGGCCT 1 cut(s) 238
StyI CCWWGG 6 cut(s) 98, 189, 747, 800, 825, 849
TaiI ACGT 1 cut(s) 72
TaqI TCGA 2 cut(s) 66, 684
TatI WGTACW 3 cut(s) 39, 61, 484
TfiI GAWTC 2 cut(s) 377, 608
Tru1I TTAA 4 cut(s) 654, 885, 932, 1119
Tru9I TTAA 4 cut(s) 654, 885, 932, 1119
TseFI GTSAC 1 cut(s) 706
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 5 cut(s) 99, 390, 522, 670, 718
XapI RAATTY 3 cut(s) 19, 107, 174
XceI RCATGY 1 cut(s) 46
XmaJI CCTAGG 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 8 cut(s) 99, 125, 171, 231, 257, 336, 633, 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.