Rmu_sc0005777.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005777.1
OG0000195
Physical Location & Seq
Forward (+)
7609 .. 8925
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005777.1_g000002.1.cds

Sequence Viewer

Length: 1137 bp
atggatcgatggggctatggatgtgatgaccctaggagatatgagcaagaaagtttctattgtttgggttatcaagaatggaatccctatgcagagagtcctatgccttgttacaaccaaccttgtgctttgtgtaattctccgtggcactcaccttttgaatgctctttgagatttgagtatccagattttatgcgagagtatgagtacaaaatgggcatgtatcaagagacatttgtacccgaggcatatccacaagagcaagcttttgagcctagaaagccatcacttgaagaacaactagctcaattggaagcctctaatgctcaattgcaagcctcccaagctcaatgtctatcctctcaagctcgattgcacgctaaattggaagcctttaatgctaaattgcaagcttctcaagaaatgacttcacattccaatgagcaacttgagcctacaagtgggttgagagattacactttggaggaaccagtacaatattggaaatctaatctacacaatgatgatgaggtatatgaagttgattccgaagaagaggatagcttgtctagtgaggaggatgcggaacttgaagagctacaccatgatcccttaatccttgaggcctatattcccaaggaggaagagagtcctttagtgcattgtaatgataaagaaattgaagagataaaggttttctctcctcctacatccacagagatccatcatgtgcttcccaaggtagagagtagaacattgagcacttatgttcttaatgagaagattgagattaaggtacttttacctctcaatccaccattaagtggtcaatgtttctacaatgaggtgatggattggaaaggaagtggagcacttgcactcactatttcccatcactctcaagagtttctaccacctattgttcctaagagcattatttctacatcacttgagaaggagaatgcaaggttggcttctagaagaaaaatagagaagaggaggaagattaagaagctacacttttggtcacccattggaatcttcatggatagctcttggtcttgcctctatgacatgtcaaggagtcccttagcccctaacaatagggtggtcgcacttgagaagtatccaccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

43.86

Weight (kDa)

4.85

Isoelectric Point (pI)

72.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 824
AciI CCGC 1 cut(s) 584
AclWI GGATC 3 cut(s) 12, 602, 715
AfaI GTAC 4 cut(s) 209, 240, 495, 798
AfiI CCNNNNNNNGG 2 cut(s) 461, 824
AflIII ACRYGT 1 cut(s) 1074
AgsI TTSAA 4 cut(s) 161, 293, 593, 683
AjuI GAANNNNNNNTTGG 2 cut(s) 953, 985
AluBI AGCT 9 cut(s) 266, 305, 347, 368, 413, 564, 598, 1015, 1053
AluI AGCT 9 cut(s) 266, 305, 347, 368, 413, 564, 598, 1015, 1053
Alw21I GWGCWC 2 cut(s) 764, 874
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 3 cut(s) 12, 602, 715
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 1 cut(s) 624
AspA2I CCTAGG 1 cut(s) 32
AsuHPI GGTGA 3 cut(s) 144, 859, 1020
AvaI CYCGRG 1 cut(s) 242
AvrII CCTAGG 1 cut(s) 32
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
Bbv12I GWGCWC 2 cut(s) 764, 874
BccI CCATC 5 cut(s) 3, 292, 732, 844, 900
BciVI GTATCC 2 cut(s) 192, 1137
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 5 cut(s) 33, 276, 302, 570, 978
BfuI GTATCC 2 cut(s) 192, 1137
BlnI CCTAGG 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 489
BmsI GCATC 1 cut(s) 571
Bpu10I CCTNAGC 1 cut(s) 1090
BpuEI CTTGAG 6 cut(s) 348, 402, 470, 641, 885, 971
Bsa29I ATCGAT 1 cut(s) 7
BsaJI CCNNGG 5 cut(s) 32, 143, 243, 636, 738
Bsc4I CCNNNNNNNGG 2 cut(s) 461, 824
Bse1I ACTGG 1 cut(s) 491
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 5 cut(s) 32, 143, 243, 636, 738
BseGI GGATG 3 cut(s) 26, 586, 710
BseLI CCNNNNNNNGG 2 cut(s) 461, 824
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 3 cut(s) 590, 693, 1012
BshFI GGCC 1 cut(s) 626
BshVI ATCGAT 1 cut(s) 7
BsiHKAI GWGCWC 2 cut(s) 764, 874
BsiHKCI CYCGRG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 1071
BslI CCNNNNNNNGG 2 cut(s) 461, 824
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 1071
BsmI GAATGC 2 cut(s) 167, 967
BsnI GGCC 1 cut(s) 626
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 764, 874
Bsp143I GATC 3 cut(s) 4, 607, 720
BspACI CCGC 1 cut(s) 584
BspANI GGCC 1 cut(s) 626
BspDI ATCGAT 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 489
BspPI GGATC 3 cut(s) 12, 602, 715
BspQI GCTCTTC 1 cut(s) 588
BsrI ACTGG 1 cut(s) 491
BssECI CCNNGG 5 cut(s) 32, 143, 243, 636, 738
BssMI GATC 3 cut(s) 4, 607, 720
BssT1I CCWWGG 3 cut(s) 32, 636, 738
Bst6I CTCTTC 5 cut(s) 549, 588, 639, 678, 989
BstC8I GCNNGC 4 cut(s) 264, 336, 378, 411
BstDEI CTNAG 2 cut(s) 927, 1090
BstDSI CCRYGG 1 cut(s) 143
BstEII GGTNACC 1 cut(s) 1026
BstF5I GGATG 3 cut(s) 26, 586, 710
BstKTI GATC 3 cut(s) 7, 610, 723
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 4, 607, 720
BstMWI GCNNNNNNNGC 6 cut(s) 280, 323, 344, 398, 451, 971
BstNSI RCATGY 2 cut(s) 223, 1078
BstPI GGTNACC 1 cut(s) 1026
BstX2I RGATCY 1 cut(s) 720
BstYI RGATCY 1 cut(s) 720
Bsu15I ATCGAT 1 cut(s) 7
BsuI GTATCC 2 cut(s) 192, 1137
BsuRI GGCC 1 cut(s) 626
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 143
BtsCI GGATG 3 cut(s) 26, 586, 710
Cac8I GCNNGC 4 cut(s) 264, 336, 378, 411
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 4 cut(s) 208, 239, 494, 797
CviAII CATG 5 cut(s) 220, 605, 728, 1045, 1075
CviQI GTAC 4 cut(s) 208, 239, 494, 797
DdeI CTNAG 2 cut(s) 927, 1090
DpnI GATC 3 cut(s) 6, 609, 722
DpnII GATC 3 cut(s) 4, 607, 720
Eam1104I CTCTTC 5 cut(s) 549, 588, 639, 678, 989
EarI CTCTTC 5 cut(s) 549, 588, 639, 678, 989
Eco130I CCWWGG 3 cut(s) 32, 636, 738
Eco147I AGGCCT 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 242
Eco91I GGTNACC 1 cut(s) 1026
EcoO65I GGTNACC 1 cut(s) 1026
EcoT14I CCWWGG 3 cut(s) 32, 636, 738
ErhI CCWWGG 3 cut(s) 32, 636, 738
FaeI CATG 5 cut(s) 223, 608, 731, 1048, 1078
FalI AAGNNNNNCTT 4 cut(s) 958, 990, 1004, 1036
FaqI GGGAC 1 cut(s) 1071
FatI CATG 5 cut(s) 219, 604, 727, 1044, 1074
FokI GGATG 3 cut(s) 33, 593, 697
FspBI CTAG 5 cut(s) 33, 276, 302, 570, 978
HaeIII GGCC 1 cut(s) 626
Hin1II CATG 5 cut(s) 223, 608, 731, 1048, 1078
HindIII AAGCTT 2 cut(s) 264, 411
HinfI GANTC 6 cut(s) 82, 97, 545, 649, 1038, 1084
HphI GGTGA 3 cut(s) 144, 859, 1020
Hpy188I TCNGA 1 cut(s) 550
Hpy188III TCNNGA 6 cut(s) 74, 185, 227, 419, 902, 978
HpyAV CCTTC 1 cut(s) 949
HpyCH4V TGCA 7 cut(s) 92, 334, 376, 409, 661, 878, 965
HpyF10VI GCNNNNNNNGC 6 cut(s) 280, 323, 344, 398, 451, 971
HpyF3I CTNAG 2 cut(s) 927, 1090
Hsp92II CATG 5 cut(s) 223, 608, 731, 1048, 1078
Kzo9I GATC 3 cut(s) 4, 607, 720
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 1 cut(s) 869
LpnPI CCDG 2 cut(s) 198, 504
LweI GCATC 1 cut(s) 571
MaeI CTAG 5 cut(s) 33, 276, 302, 570, 978
MaeIII GTNAC 2 cut(s) 110, 1026
MalI GATC 3 cut(s) 6, 609, 722
MboI GATC 3 cut(s) 4, 607, 720
MfeI CAATTG 2 cut(s) 308, 329
MflI RGATCY 1 cut(s) 720
MhlI GDGCHC 2 cut(s) 764, 874
MluCI AATT 6 cut(s) 136, 308, 329, 383, 404, 678
MlyI GAGTC 3 cut(s) 106, 658, 1093
MseI TTAA 7 cut(s) 396, 614, 774, 792, 821, 1008, 1135
MslI CAYNNNNRTG 3 cut(s) 438, 522, 666
MunI CAATTG 2 cut(s) 308, 329
Mva1269I GAATGC 2 cut(s) 167, 967
MwoI GCNNNNNNNGC 6 cut(s) 280, 323, 344, 398, 451, 971
NdeII GATC 3 cut(s) 4, 607, 720
NlaIII CATG 5 cut(s) 223, 608, 731, 1048, 1078
NlaIV GGNNCC 1 cut(s) 489
NmuCI GTSAC 1 cut(s) 1026
NspI RCATGY 2 cut(s) 223, 1078
PceI AGGCCT 1 cut(s) 626
PciI ACATGT 1 cut(s) 1074
PciSI GCTCTTC 1 cut(s) 588
PctI GAATGC 2 cut(s) 167, 967
PfeI GAWTC 3 cut(s) 82, 545, 1038
PflMI CCANNNNNTGG 1 cut(s) 824
PleI GAGTC 3 cut(s) 105, 657, 1092
PpsI GAGTC 3 cut(s) 105, 657, 1092
PscI ACATGT 1 cut(s) 1074
PspEI GGTNACC 1 cut(s) 1026
PspN4I GGNNCC 1 cut(s) 489
PsuI RGATCY 1 cut(s) 720
RsaI GTAC 4 cut(s) 209, 240, 495, 798
RsaNI GTAC 4 cut(s) 208, 239, 494, 797
RseI CAYNNNNRTG 3 cut(s) 438, 522, 666
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 7 cut(s) 396, 614, 774, 792, 821, 1008, 1135
Sau3AI GATC 3 cut(s) 4, 607, 720
SchI GAGTC 3 cut(s) 106, 658, 1093
SduI GDGCHC 2 cut(s) 764, 874
SfaNI GCATC 1 cut(s) 571
SmiMI CAYNNNNRTG 3 cut(s) 438, 522, 666
SmlI CTYRAG 7 cut(s) 363, 417, 449, 620, 900, 950, 1118
SmoI CTYRAG 7 cut(s) 363, 417, 449, 620, 900, 950, 1118
Sse9I AATT 6 cut(s) 136, 308, 329, 383, 404, 678
SseBI AGGCCT 1 cut(s) 626
SsiI CCGC 1 cut(s) 584
SspI AATATT 1 cut(s) 500
SspMI CTAG 5 cut(s) 33, 276, 302, 570, 978
StuI AGGCCT 1 cut(s) 626
StyI CCWWGG 3 cut(s) 32, 636, 738
TaqI TCGA 2 cut(s) 7, 370
TasI AATT 6 cut(s) 136, 308, 329, 383, 404, 678
TatI WGTACW 2 cut(s) 207, 493
TfiI GAWTC 3 cut(s) 82, 545, 1038
Tru1I TTAA 7 cut(s) 396, 614, 774, 792, 821, 1008, 1135
Tru9I TTAA 7 cut(s) 396, 614, 774, 792, 821, 1008, 1135
TseFI GTSAC 1 cut(s) 1026
Tsp45I GTSAC 1 cut(s) 1026
TspDTI ATGAA 2 cut(s) 552, 1033
TspGWI ACGGA 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 824
XbaI TCTAGA 1 cut(s) 977
XceI RCATGY 2 cut(s) 223, 1078
XcmI CCANNNNNNNNNTGG 1 cut(s) 498
XmaJI CCTAGG 1 cut(s) 32
XspI CTAG 5 cut(s) 33, 276, 302, 570, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.