Rroxscaffold_1G00031990

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
45446959 .. 45452367
5409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031990.1

Sequence Viewer

Length: 492 bp
ATGGATTGGAAAGGAAGTGGAGCACTTGCACTCACTATTTCCCATCACTCTCAAGAGTTTCTACCACCTATTGTTCCTAAGAGCATTATTTCTACATCACTTGAGAAGGAGAATGCAAGGTTGGCTTCTAGAAGAAAAATAGAGAAGAGGACGAAGATTAAGAAGCTACACTTTTGGTCATCCATTGGAATCTTCATGGATAGCTCTTGGTCTTGCCTCTATGACATGTCAAGGAGTCCCTTAGCCCCTAACAATAGGGAAGCACGAAGCATCTTTGCAGCCTTTCTAATTATGCTTCCAATTATGCTTCTTGTTAGGTTGCACGTGTCGCAAACCAAGGAAGCCATCCACCCATTGATTGATGCATTTGCTTCAATCTCCGGTTTCCGACAGGATTTCTTGAGGGTTTTGGTTGTTGGTGAGGTGTTGAACGTGTTCCTAATTTTGTTGCAGCTTGTTTTGGCAGGCGGAGGAAGAATTGAAAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.31

Weight (kDa)

9.83

Isoelectric Point (pI)

55.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 468
AcvI CACGTG 1 cut(s) 325
AflIII ACRYGT 3 cut(s) 225, 324, 432
AgsI TTSAA 3 cut(s) 375, 430, 482
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 3 cut(s) 166, 204, 454
AluI AGCT 3 cut(s) 166, 204, 454
Alw21I GWGCWC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 278, 451
Asp700I GAANNNNTTC 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 431
BbrPI CACGTG 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 290, 463
BccI CCATC 2 cut(s) 51, 353
BfaI CTAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 279, 452
BlsI GCNGC 2 cut(s) 280, 453
BmsI GCATC 2 cut(s) 279, 352
Bpu10I CCTNAGC 1 cut(s) 241
BpuEI CTTGAG 3 cut(s) 36, 122, 421
BsaAI YACGTR 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 336
BsaWI WCCGGW 1 cut(s) 380
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 179, 345
BseXI GCAGC 2 cut(s) 290, 463
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 25
BspACI CCGC 1 cut(s) 468
BssECI CCNNGG 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 2 cut(s) 78, 241
BstF5I GGATG 2 cut(s) 179, 345
BstMWI GCNNNNNNNGC 2 cut(s) 122, 328
BstNSI RCATGY 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 290, 463
BtsCI GGATG 2 cut(s) 179, 345
Cac8I GCNNGC 1 cut(s) 466
CviAII CATG 2 cut(s) 196, 226
CviJI RGCY 7 cut(s) 125, 166, 204, 245, 281, 344, 454
CviKI_1 RGCY 7 cut(s) 125, 166, 204, 245, 281, 344, 454
DdeI CTNAG 2 cut(s) 78, 241
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
EciI GGCGGA 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 336
Eco72I CACGTG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 2 cut(s) 199, 229
FaiI YATR 5 cut(s) 197, 222, 227, 293, 305
FalI AAGNNNNNCTT 4 cut(s) 109, 141, 155, 187
FaqI GGGAC 1 cut(s) 222
FatI CATG 2 cut(s) 195, 225
Fnu4HI GCNGC 2 cut(s) 279, 452
FokI GGATG 2 cut(s) 166, 332
Fsp4HI GCNGC 2 cut(s) 279, 452
FspBI CTAG 1 cut(s) 129
GluI GCNGC 2 cut(s) 279, 452
HapII CCGG 1 cut(s) 381
Hin1II CATG 2 cut(s) 199, 229
HinfI GANTC 2 cut(s) 189, 235
HpaII CCGG 1 cut(s) 381
HphI GGTGA 1 cut(s) 431
Hpy188I TCNGA 1 cut(s) 389
Hpy188III TCNNGA 3 cut(s) 53, 129, 400
HpyAV CCTTC 1 cut(s) 100
HpyCH4IV ACGT 2 cut(s) 324, 432
HpyCH4V TGCA 6 cut(s) 29, 116, 278, 322, 365, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 328
HpyF3I CTNAG 2 cut(s) 78, 241
HpySE526I ACGT 2 cut(s) 324, 432
Hsp92II CATG 2 cut(s) 199, 229
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 3 cut(s) 377, 394, 450
Lsp1109I GCAGC 2 cut(s) 290, 463
LweI GCATC 2 cut(s) 279, 352
MaeI CTAG 1 cut(s) 129
MaeII ACGT 2 cut(s) 324, 432
MboII GAAGA 5 cut(s) 144, 157, 166, 184, 486
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 4 cut(s) 288, 300, 441, 477
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 5 cut(s) 141, 227, 396, 415, 464
Mph1103I ATGCAT 1 cut(s) 367
MroXI GAANNNNTTC 1 cut(s) 434
MseI TTAA 1 cut(s) 159
MspI CCGG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 122, 328
NlaIII CATG 2 cut(s) 199, 229
NsiI ATGCAT 1 cut(s) 367
NspI RCATGY 1 cut(s) 229
PciI ACATGT 1 cut(s) 225
PctI GAATGC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 1 cut(s) 189
PkrI GCNGC 2 cut(s) 280, 453
PleI GAGTC 1 cut(s) 243
PmaCI CACGTG 1 cut(s) 325
PmlI CACGTG 1 cut(s) 325
PpsI GAGTC 1 cut(s) 243
Ppu21I YACGTR 1 cut(s) 325
PscI ACATGT 1 cut(s) 225
PspCI CACGTG 1 cut(s) 325
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 2 cut(s) 279, 452
SchI GAGTC 1 cut(s) 244
SduI GDGCHC 1 cut(s) 25
SetI ASST 9 cut(s) 70, 122, 168, 206, 320, 327, 426, 435, 456
SfaNI GCATC 2 cut(s) 279, 352
SmlI CTYRAG 3 cut(s) 51, 101, 400
SmoI CTYRAG 3 cut(s) 51, 101, 400
Sse9I AATT 4 cut(s) 288, 300, 441, 477
SsiI CCGC 1 cut(s) 468
SspMI CTAG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 336
TaiI ACGT 2 cut(s) 327, 435
TasI AATT 4 cut(s) 288, 300, 441, 477
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 2 cut(s) 278, 451
TspDTI ATGAA 1 cut(s) 184
XbaI TCTAGA 1 cut(s) 128
XceI RCATGY 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 434
XspI CTAG 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.