Rroxscaffold_3G00233640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000195
Physical Location & Seq
Forward (+)
19767406 .. 19768692
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00233640.1

Sequence Viewer

Length: 1089 bp
ATGGATCAATGGAGCTATGTATGGGATAACTTGAGGGGATATGAGCAAGAAAGTTTCTATGGTGGAGGTCATCAAGAGTGGAAATCTCATGCGATGGGTTCTATGTCTTCTTGCAATGAAACTTGTGCTTTGTGTAATTCTCCATGGCATTCACCTTTTGAGTGCTCTTTAAGATTTGAGTGCCCGGATTTTATGCAAGAGTGTGAGTACAAGATGGGCATGTATCAAGAGACATTTGTACCCGATGCACATCCACAAGATGAAGCTTATGAGTGTAGGAAGGAATTCGTTGAAGGACTACCAGCTCAATTGCAAGCCTCCCAAGCTCTATTACAAGCCTCTCAAGCTAGGATTTCACAAGAGACTATGGTTCCCGAAGCATATCCTCATGAGCAAGTTGAAGCCTATTTCAAGAGAAGATGTGTATATCGAGCACTTGAGCAAGAGTCTTTTATTCAAGTTGAAAATGATGTTAGTGATGTTGATGTACAAGAAAGTGAGCTTGGTTATGAAAGTTCCAATGCAAGTGGGGTAAGAGACTACACTTCGGAGGAGTTCGTGCAATATTGGAAATCTAAGCTTCCAAATGGGAAGGAGATATTTGAAAACGATTTCGAAGAGGAAGATGGCTTGTCCGGTGGGGAGGATGCGGAGTTTGAAGTCATACACCATAATCCCTTATTCATCGAGGAGGATGCGGAGCTTGAAATTATACACCATAATCCCTTATTCATTGAGGTAGATATTCCCAAAGAGGAAGAGAGTCTTTCAATGCATTGTAATGATGAAGAAGTTAAAGAGTCAAGGACTTTCTCGCCTCCTAAATCCATGGAGATCCATCATGAGCTTCCTAAGGTGGAGAGTAGAACATTGAGTACTTATGTTCTTAATGAGAGGATTGGGATCAAGGTACTTTTACCTCCCAATCCACCATTAAGTGGTCAATGTTTCGACAATGAGGTGATGGATTGGAAAGGAAATGGAGCACTTGCACTCACCCTTTCTCATCACTCTCAAGAGCTTCACCAGCCTATCGTTCCTATGAGCTCATTTCTACACCACTTGAGTAGGAGAAGGCAAGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

362

Amino Acids

41.79

Weight (kDa)

4.61

Isoelectric Point (pI)

66.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 938
AciI CCGC 2 cut(s) 650, 698
AclWI GGATC 3 cut(s) 12, 829, 911
AcsI RAATTY 1 cut(s) 284
AfaI GTAC 5 cut(s) 209, 240, 489, 877, 912
AfiI CCNNNNNNNGG 1 cut(s) 938
AgsI TTSAA 9 cut(s) 293, 401, 412, 458, 464, 605, 659, 707, 771
AjuI GAANNNNNNNTTGG 2 cut(s) 486, 518
Alw21I GWGCWC 4 cut(s) 167, 436, 988, 1049
Alw26I GTCTC 3 cut(s) 224, 356, 531
AlwI GGATC 3 cut(s) 12, 829, 911
ApoI RAATTY 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 4 cut(s) 144, 973, 988, 1016
AsuII TTCGAA 1 cut(s) 615
AxyI CCTNAGG 1 cut(s) 852
BaeGI GKGCMC 1 cut(s) 185
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BanII GRGCYC 1 cut(s) 1049
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 4 cut(s) 167, 436, 988, 1049
BccI CCATC 5 cut(s) 88, 208, 620, 846, 958
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 3 cut(s) 224, 356, 531
BfaI CTAG 1 cut(s) 348
BmcAI AGTACT 1 cut(s) 877
Bme1390I CCNGG 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 3 cut(s) 235, 637, 685
BpiI GAAGAC 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 615
BpuEI CTTGAG 5 cut(s) 52, 327, 458, 999, 1084
BpuMI CCSGG 1 cut(s) 185
BsaBI GATNNNNATC 2 cut(s) 249, 902
BsaJI CCNNGG 2 cut(s) 143, 828
BsaWI WCCGGW 1 cut(s) 635
Bsc4I CCNNNNNNNGG 1 cut(s) 938
Bse21I CCTNAGG 1 cut(s) 852
Bse3DI GCAATG 1 cut(s) 121
Bse8I GATNNNNATC 2 cut(s) 249, 902
BseDI CCNNGG 2 cut(s) 143, 828
BseGI GGATG 3 cut(s) 250, 652, 700
BseJI GATNNNNATC 2 cut(s) 249, 902
BseLI CCNNNNNNNGG 1 cut(s) 938
BseMI GCAATG 1 cut(s) 121
BseRI GAGGAG 2 cut(s) 566, 704
BseSI GKGCMC 1 cut(s) 185
BsiHKAI GWGCWC 4 cut(s) 167, 436, 988, 1049
BsiSI CCGG 2 cut(s) 185, 636
BslI CCNNNNNNNGG 1 cut(s) 938
BsmAI GTCTC 3 cut(s) 224, 356, 531
BsmI GAATGC 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 615
Bsp1286I GDGCHC 5 cut(s) 167, 185, 436, 988, 1049
Bsp1407I TGTACA 1 cut(s) 487
Bsp143I GATC 3 cut(s) 4, 834, 903
Bsp19I CCATGG 2 cut(s) 143, 828
BspACI CCGC 2 cut(s) 650, 698
BspHI TCATGA 2 cut(s) 388, 841
BspLI GGNNCC 1 cut(s) 372
BspPI GGATC 3 cut(s) 12, 829, 911
BspT104I TTCGAA 1 cut(s) 615
BsrDI GCAATG 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 487
BssECI CCNNGG 2 cut(s) 143, 828
BssMI GATC 3 cut(s) 4, 834, 903
BssT1I CCWWGG 2 cut(s) 143, 828
Bst6I CTCTTC 2 cut(s) 612, 753
BstAUI TGTACA 1 cut(s) 487
BstBI TTCGAA 1 cut(s) 615
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 2 cut(s) 576, 852
BstDSI CCRYGG 2 cut(s) 143, 828
BstF5I GGATG 3 cut(s) 250, 652, 700
BstKTI GATC 3 cut(s) 7, 837, 906
BstMAI GTCTC 3 cut(s) 224, 356, 531
BstMBI GATC 3 cut(s) 4, 834, 903
BstMWI GCNNNNNNNGC 3 cut(s) 323, 344, 1027
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 185
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 834
BstYI RGATCY 1 cut(s) 834
Bsu36I CCTNAGG 1 cut(s) 852
BtgI CCRYGG 2 cut(s) 143, 828
BtgZI GCGATG 1 cut(s) 107
BtsCI GGATG 3 cut(s) 250, 652, 700
Cac8I GCNNGC 1 cut(s) 315
CciI TCATGA 2 cut(s) 388, 841
Csp6I GTAC 5 cut(s) 208, 239, 488, 876, 911
CspCI CAANNNNNGTGG 2 cut(s) 508, 543
CviAII CATG 6 cut(s) 89, 144, 220, 389, 829, 842
CviQI GTAC 5 cut(s) 208, 239, 488, 876, 911
DdeI CTNAG 2 cut(s) 576, 852
DpnI GATC 3 cut(s) 6, 836, 905
DpnII GATC 3 cut(s) 4, 834, 903
Eam1104I CTCTTC 2 cut(s) 612, 753
EarI CTCTTC 2 cut(s) 612, 753
Ecl136II GAGCTC 1 cut(s) 1047
Eco130I CCWWGG 2 cut(s) 143, 828
Eco24I GRGCYC 1 cut(s) 1049
Eco53kI GAGCTC 1 cut(s) 1047
Eco81I CCTNAGG 1 cut(s) 852
EcoICRI GAGCTC 1 cut(s) 1047
EcoRI GAATTC 1 cut(s) 284
EcoT14I CCWWGG 2 cut(s) 143, 828
EcoT22I ATGCAT 1 cut(s) 777
EcoT38I GRGCYC 1 cut(s) 1049
ErhI CCWWGG 2 cut(s) 143, 828
FaeI CATG 6 cut(s) 92, 147, 223, 392, 832, 845
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FatI CATG 6 cut(s) 88, 143, 219, 388, 828, 841
FokI GGATG 3 cut(s) 237, 659, 707
FriOI GRGCYC 1 cut(s) 1049
FspBI CTAG 1 cut(s) 348
HapII CCGG 2 cut(s) 185, 636
Hin1II CATG 6 cut(s) 92, 147, 223, 392, 832, 845
HindIII AAGCTT 2 cut(s) 264, 578
HinfI GANTC 3 cut(s) 446, 763, 800
HpaII CCGG 2 cut(s) 185, 636
HphI GGTGA 4 cut(s) 144, 973, 988, 1016
Hpy188I TCNGA 1 cut(s) 550
Hpy188III TCNNGA 7 cut(s) 74, 227, 374, 389, 412, 842, 1016
HpyAV CCTTC 4 cut(s) 274, 287, 586, 1068
HpyCH4V TGCA 8 cut(s) 114, 196, 248, 313, 524, 562, 775, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 344, 1027
HpyF3I CTNAG 2 cut(s) 576, 852
Hsp92II CATG 6 cut(s) 92, 147, 223, 392, 832, 845
Kzo9I GATC 3 cut(s) 4, 834, 903
LmnI GCTCC 3 cut(s) 12, 700, 983
LpnPI CCDG 4 cut(s) 198, 315, 649, 1040
LweI GCATC 3 cut(s) 235, 637, 685
MaeI CTAG 1 cut(s) 348
MalI GATC 3 cut(s) 6, 836, 905
MboI GATC 3 cut(s) 4, 834, 903
MboII GAAGA 6 cut(s) 99, 429, 629, 635, 770, 800
MfeI CAATTG 1 cut(s) 308
MflI RGATCY 1 cut(s) 834
MhlI GDGCHC 5 cut(s) 167, 185, 436, 988, 1049
MluCI AATT 4 cut(s) 136, 284, 308, 708
MlyI GAGTC 3 cut(s) 455, 772, 809
Mph1103I ATGCAT 1 cut(s) 777
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 4 cut(s) 170, 795, 888, 935
MslI CAYNNNNRTG 1 cut(s) 780
MspI CCGG 2 cut(s) 185, 636
MspR9I CCNGG 1 cut(s) 185
MunI CAATTG 1 cut(s) 308
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 3 cut(s) 323, 344, 1027
NciI CCSGG 1 cut(s) 185
NcoI CCATGG 2 cut(s) 143, 828
NdeII GATC 3 cut(s) 4, 834, 903
NlaIII CATG 6 cut(s) 92, 147, 223, 392, 832, 845
NlaIV GGNNCC 1 cut(s) 372
NsiI ATGCAT 1 cut(s) 777
NspI RCATGY 1 cut(s) 223
NspV TTCGAA 1 cut(s) 615
PagI TCATGA 2 cut(s) 388, 841
PctI GAATGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 938
PleI GAGTC 3 cut(s) 454, 771, 808
PpsI GAGTC 3 cut(s) 454, 771, 808
Psp124BI GAGCTC 1 cut(s) 1049
PspN4I GGNNCC 1 cut(s) 372
PsrI GAACNNNNNNTAC 2 cut(s) 859, 891
PsuI RGATCY 1 cut(s) 834
RsaI GTAC 5 cut(s) 209, 240, 489, 877, 912
RsaNI GTAC 5 cut(s) 208, 239, 488, 876, 911
RseI CAYNNNNRTG 1 cut(s) 780
SacI GAGCTC 1 cut(s) 1049
SaqAI TTAA 4 cut(s) 170, 795, 888, 935
Sau3AI GATC 3 cut(s) 4, 834, 903
ScaI AGTACT 1 cut(s) 877
SchI GAGTC 3 cut(s) 455, 772, 809
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 5 cut(s) 167, 185, 436, 988, 1049
SfaNI GCATC 3 cut(s) 235, 637, 685
SfuI TTCGAA 1 cut(s) 615
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 5 cut(s) 31, 342, 437, 1014, 1063
SmoI CTYRAG 5 cut(s) 31, 342, 437, 1014, 1063
Sse9I AATT 4 cut(s) 136, 284, 308, 708
SsiI CCGC 2 cut(s) 650, 698
SspI AATATT 1 cut(s) 566
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 1 cut(s) 1049
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 2 cut(s) 143, 828
TaqI TCGA 4 cut(s) 430, 615, 687, 951
TasI AATT 4 cut(s) 136, 284, 308, 708
TatI WGTACW 3 cut(s) 207, 487, 875
Tru1I TTAA 4 cut(s) 170, 795, 888, 935
Tru9I TTAA 4 cut(s) 170, 795, 888, 935
TspDTI ATGAA 6 cut(s) 132, 276, 525, 673, 721, 801
Van91I CCANNNNNTGG 1 cut(s) 938
XapI RAATTY 1 cut(s) 284
XceI RCATGY 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 877
Zsp2I ATGCAT 1 cut(s) 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.