Rmu_sc0007258.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007258.1
OG0000195
Physical Location & Seq
Reverse (-)
41897 .. 42385
489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007258.1_g000016.1.cds

Sequence Viewer

Length: 489 bp
atggatcaatggagctatagatgggaagacccaaggggatatgagcaagaaagtttctatggtggaggtcatcaagagtggaattctcatgcagtgggttctatgtcctcttgcaatgaaacttgtgctttgtgtaattttccgtggcattcacgttttgagtgctctatgagatttgaatgcccaaattttatgcaagagtgtgagtacaagatggacatgtatcaagagacatttgtacctgacgcatatctacaagatgaagcttatgagcctaggaaagaattcgttgaaggactaccagctcaattgcaagcctcccgagatcttttacaagcctctcaagttaggatttcacaagagaccaaggtgtccgaaggatatcctcatgagcaagcgtatgagtctaggaagccttctcttgaagaattgctagctcaattgcaagcttctcaagaaatacttatacataccaatgagcaactttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

19.06

Weight (kDa)

4.56

Isoelectric Point (pI)

70.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 370
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 3 cut(s) 82, 187, 284
AfaI GTAC 2 cut(s) 209, 240
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 3 cut(s) 179, 293, 425
AluBI AGCT 5 cut(s) 15, 266, 305, 437, 449
AluI AGCT 5 cut(s) 15, 266, 305, 437, 449
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 2 cut(s) 224, 356
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 321
ApoI RAATTY 3 cut(s) 82, 187, 284
Asp700I GAANNNNTTC 1 cut(s) 284
AspA2I CCTAGG 1 cut(s) 275
AsuNHI GCTAGC 1 cut(s) 433
AvaI CYCGRG 1 cut(s) 321
AvrII CCTAGG 1 cut(s) 275
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 167
BccI CCATC 2 cut(s) 15, 208
BcoDI GTCTC 2 cut(s) 224, 356
BfaI CTAG 3 cut(s) 276, 408, 434
BfmI CTRYAG 1 cut(s) 16
BglII AGATCT 1 cut(s) 325
BlnI CCTAGG 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 321
BmtI GCTAGC 1 cut(s) 437
BpiI GAAGAC 1 cut(s) 33
BpuEI CTTGAG 2 cut(s) 327, 438
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 4 cut(s) 32, 143, 275, 366
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 4 cut(s) 32, 143, 275, 366
BseMI GCAATG 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 321
BsmAI GTCTC 2 cut(s) 224, 356
BsmI GAATGC 2 cut(s) 148, 185
Bso31I GGTCTC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 2 cut(s) 4, 325
BspHI TCATGA 1 cut(s) 388
BspOI GCTAGC 1 cut(s) 437
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 121
BssECI CCNNGG 4 cut(s) 32, 143, 275, 366
BssMI GATC 2 cut(s) 4, 325
BssT1I CCWWGG 3 cut(s) 32, 275, 366
BstC8I GCNNGC 4 cut(s) 315, 396, 435, 447
BstDSI CCRYGG 1 cut(s) 143
BstKTI GATC 2 cut(s) 7, 328
BstMAI GTCTC 2 cut(s) 224, 356
BstMBI GATC 2 cut(s) 4, 325
BstNSI RCATGY 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BtgI CCRYGG 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 315, 396, 435, 447
CciI TCATGA 1 cut(s) 388
CseI GACGC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 208, 239
CviAII CATG 3 cut(s) 89, 220, 389
CviJI RGCY 9 cut(s) 15, 266, 274, 305, 317, 338, 415, 437, 449
CviKI_1 RGCY 9 cut(s) 15, 266, 274, 305, 317, 338, 415, 437, 449
CviQI GTAC 2 cut(s) 208, 239
DpnI GATC 2 cut(s) 6, 327
DpnII GATC 2 cut(s) 4, 325
DrdI GACNNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 370
Eco130I CCWWGG 3 cut(s) 32, 275, 366
Eco31I GGTCTC 1 cut(s) 356
Eco32I GATATC 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 321
EcoRI GAATTC 2 cut(s) 82, 284
EcoRV GATATC 1 cut(s) 383
EcoT14I CCWWGG 3 cut(s) 32, 275, 366
ErhI CCWWGG 3 cut(s) 32, 275, 366
FaeI CATG 3 cut(s) 92, 223, 392
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FatI CATG 3 cut(s) 88, 219, 388
FspBI CTAG 3 cut(s) 276, 408, 434
HgaI GACGC 1 cut(s) 254
Hin1II CATG 3 cut(s) 92, 223, 392
HindIII AAGCTT 2 cut(s) 264, 447
HinfI GANTC 1 cut(s) 404
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 6 cut(s) 74, 227, 321, 389, 422, 455
HpyAV CCTTC 3 cut(s) 287, 371, 426
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 5 cut(s) 92, 114, 196, 313, 445
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 3 cut(s) 92, 223, 392
Kzo9I GATC 2 cut(s) 4, 325
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 2 cut(s) 255, 315
MaeI CTAG 3 cut(s) 276, 408, 434
MaeII ACGT 1 cut(s) 154
MalI GATC 2 cut(s) 6, 327
MboI GATC 2 cut(s) 4, 325
MboII GAAGA 2 cut(s) 38, 437
MfeI CAATTG 2 cut(s) 308, 440
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 7 cut(s) 82, 136, 187, 284, 308, 428, 440
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 5 cut(s) 59, 118, 328, 349, 396
MroXI GAANNNNTTC 1 cut(s) 284
MslI CAYNNNNRTG 1 cut(s) 474
MunI CAATTG 2 cut(s) 308, 440
Mva1269I GAATGC 2 cut(s) 148, 185
NdeII GATC 2 cut(s) 4, 325
NheI GCTAGC 1 cut(s) 433
NlaIII CATG 3 cut(s) 92, 223, 392
NspI RCATGY 1 cut(s) 223
PagI TCATGA 1 cut(s) 388
PciI ACATGT 1 cut(s) 219
PctI GAATGC 2 cut(s) 148, 185
PdmI GAANNNNTTC 1 cut(s) 284
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
PscI ACATGT 1 cut(s) 219
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 2 cut(s) 209, 240
RsaNI GTAC 2 cut(s) 208, 239
RseI CAYNNNNRTG 1 cut(s) 474
Sau3AI GATC 2 cut(s) 4, 325
SchI GAGTC 1 cut(s) 413
SduI GDGCHC 1 cut(s) 167
SetI ASST 9 cut(s) 17, 70, 157, 244, 268, 307, 372, 439, 451
SfcI CTRYAG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 342, 453
SmoI CTYRAG 2 cut(s) 342, 453
Sse9I AATT 7 cut(s) 82, 136, 187, 284, 308, 428, 440
SspMI CTAG 3 cut(s) 276, 408, 434
StyI CCWWGG 3 cut(s) 32, 275, 366
TaiI ACGT 1 cut(s) 157
TasI AATT 7 cut(s) 82, 136, 187, 284, 308, 428, 440
TatI WGTACW 1 cut(s) 207
TscAI CASTG 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 132, 276
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 99
XapI RAATTY 3 cut(s) 82, 187, 284
XceI RCATGY 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 3 cut(s) 276, 408, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.