RchiOBHm_Chr1g0366971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000195
Physical Location & Seq
Forward (+)
57395601 .. 57396818
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59148

Sequence Viewer

Length: 1074 bp
ATGGATCGGTGGAACTATGGATGGGAAGACCCATGGGGATATGAGCAAGAAAGTTTATATGGTGGAGGTTATCAAGCTTATGAGCCTAGAAAGGAATTCGCTGAAGGACTACTAGCTCAATTGCAAGCTTCTCAAGCTCTCTTGCAAGCCTCCCAAGCTCGATTGCAAGCTTCTCAAGAGATGCTTCTACATTCCAATGAGCAACTTAAAGCTAGTCTTGCACAAGAGCCACCCTTCACCATTTATGAGCATGAATCTTTCTTTGACCAAATGGAGCCTAATTCAAGAGAAGAAGTATATTATGAGCATCATGAACAAGAGTTGCCTATTCAAGATCGAGATGGTGATGTTCATGAACAAGAAAGTGAGCTTGGTTATGAAAGTTCCAATGCAAGTGGGGTGAGAGACTACACTTCGGAGGAACCGGTGCAATATTGGAAATCTAATCTTCACAATGAAGAGCAGGTATATGAAGTTGATTCCGAAGAAGAGGATAGCTTGTCTAGTGAGGAAGATGTGGAGCTTGAAGATTTACACCATGATCCCTTAATCATTGAGGTCGATATTCCCATGGAGGAAGAGAGTCTTTCACTAGCTTGTGATGATGAAGAAATTGAAGAGCCAAGGACTTTCTCTCCTCCCACATCCATGGAGATCCATCATGAGCTTCCCAAGGTGGATTGTAGAATATTGAGCACTTATGTTCTTAATGCGAGGATTGGGATCAAGGTATTTTTACCTCCCAATCCACCATTTAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAGTGGAGCACTTACACTTAACCTTTCCCATCACTCTCGGGAGCTTCTACCACCTATTGTTTGTAAGAGCATTATTTCTATACCACTTGAGAATGAGAAGGCAAGTATATTGGCTCCTAGAAGAAAAATTGAGAAGAAGAGGAAAATTAAGAAGCTACACTTTTGCTTGCCATTTGGAATATTCATAAGTAGTTCTTGGTCTTGCCTCTATGATACATCAAGGAGTCCTTTAGCCCCAAACAATAGGGTGGTCGTACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

41.19

Weight (kDa)

4.6

Isoelectric Point (pI)

64.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 454
AccB7I CCANNNNNTGG 1 cut(s) 758
AclWI GGATC 4 cut(s) 12, 536, 649, 731
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 1053
AfiI CCNNNNNNNGG 1 cut(s) 758
AgeI ACCGGT 1 cut(s) 424
AgsI TTSAA 4 cut(s) 285, 332, 527, 617
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
Alw21I GWGCWC 2 cut(s) 698, 808
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 4 cut(s) 12, 536, 649, 731
Ama87I CYCGRG 1 cut(s) 834
ApoI RAATTY 1 cut(s) 95
AsiGI ACCGGT 1 cut(s) 424
AsuHPI GGTGA 4 cut(s) 229, 356, 412, 793
AvaI CYCGRG 1 cut(s) 834
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 698, 808
BccI CCATC 5 cut(s) 15, 335, 666, 778, 834
BciVI GTATCC 1 cut(s) 1074
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 6 cut(s) 87, 113, 213, 504, 593, 915
BfuAI ACCTGC 1 cut(s) 454
BfuI GTATCC 1 cut(s) 1074
BmeT110I CYCGRG 1 cut(s) 834
BmiI GGNNCC 3 cut(s) 276, 423, 912
BmsI GCATC 2 cut(s) 171, 316
BpiI GAAGAC 1 cut(s) 33
BpuEI CTTGAG 3 cut(s) 117, 159, 905
BsaBI GATNNNNATC 1 cut(s) 722
BsaJI CCNNGG 5 cut(s) 32, 570, 623, 648, 672
BsaWI WCCGGW 1 cut(s) 424
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bsc4I CCNNNNNNNGG 1 cut(s) 758
Bse118I RCCGGY 1 cut(s) 424
Bse8I GATNNNNATC 1 cut(s) 722
BseDI CCNNGG 5 cut(s) 32, 570, 623, 648, 672
BseGI GGATG 2 cut(s) 26, 644
BseJI GATNNNNATC 1 cut(s) 722
BseLI CCNNNNNNNGG 1 cut(s) 758
BseRI GAGGAG 1 cut(s) 627
BshTI ACCGGT 1 cut(s) 424
BsiHKAI GWGCWC 2 cut(s) 698, 808
BsiHKCI CYCGRG 1 cut(s) 834
BsiSI CCGG 1 cut(s) 425
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 1 cut(s) 399
BsoBI CYCGRG 1 cut(s) 834
Bsp1286I GDGCHC 2 cut(s) 698, 808
Bsp143I GATC 5 cut(s) 4, 334, 541, 654, 723
Bsp19I CCATGG 3 cut(s) 32, 570, 648
BspHI TCATGA 3 cut(s) 310, 352, 661
BspLI GGNNCC 3 cut(s) 276, 423, 912
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 4 cut(s) 12, 536, 649, 731
BspQI GCTCTTC 2 cut(s) 453, 612
BsrFI RCCGGY 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 5 cut(s) 32, 570, 623, 648, 672
BssMI GATC 5 cut(s) 4, 334, 541, 654, 723
BssT1I CCWWGG 5 cut(s) 32, 570, 623, 648, 672
Bst6I CTCTTC 5 cut(s) 453, 483, 573, 612, 929
BstC8I GCNNGC 4 cut(s) 126, 147, 168, 965
BstDSI CCRYGG 3 cut(s) 32, 570, 648
BstF5I GGATG 2 cut(s) 26, 644
BstKTI GATC 5 cut(s) 7, 337, 544, 657, 726
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 5 cut(s) 4, 334, 541, 654, 723
BstMWI GCNNNNNNNGC 3 cut(s) 134, 155, 218
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 654
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 1 cut(s) 654
BsuI GTATCC 1 cut(s) 1074
BtgI CCRYGG 3 cut(s) 32, 570, 648
BtsCI GGATG 2 cut(s) 26, 644
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 4 cut(s) 126, 147, 168, 965
CciI TCATGA 3 cut(s) 310, 352, 661
Cfr10I RCCGGY 1 cut(s) 424
Csp6I GTAC 1 cut(s) 1052
CspAI ACCGGT 1 cut(s) 424
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviAII CATG 8 cut(s) 33, 251, 311, 353, 539, 571, 649, 662
CviQI GTAC 1 cut(s) 1052
DpnI GATC 5 cut(s) 6, 336, 543, 656, 725
DpnII GATC 5 cut(s) 4, 334, 541, 654, 723
Eam1104I CTCTTC 5 cut(s) 453, 483, 573, 612, 929
EarI CTCTTC 5 cut(s) 453, 483, 573, 612, 929
Eco130I CCWWGG 5 cut(s) 32, 570, 623, 648, 672
Eco57I CTGAAG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 834
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 5 cut(s) 32, 570, 623, 648, 672
ErhI CCWWGG 5 cut(s) 32, 570, 623, 648, 672
FaeI CATG 8 cut(s) 36, 254, 314, 356, 542, 574, 652, 665
FatI CATG 8 cut(s) 32, 250, 310, 352, 538, 570, 648, 661
FokI GGATG 2 cut(s) 33, 631
FspBI CTAG 6 cut(s) 87, 113, 213, 504, 593, 915
HapII CCGG 1 cut(s) 425
Hin1II CATG 8 cut(s) 36, 254, 314, 356, 542, 574, 652, 665
HindIII AAGCTT 3 cut(s) 75, 126, 168
HinfI GANTC 4 cut(s) 254, 479, 583, 1021
HpaII CCGG 1 cut(s) 425
HphI GGTGA 4 cut(s) 229, 356, 412, 793
Hpy188I TCNGA 2 cut(s) 418, 484
Hpy188III TCNNGA 8 cut(s) 176, 285, 311, 332, 338, 353, 662, 836
HpyAV CCTTC 3 cut(s) 98, 244, 889
HpyCH4V TGCA 6 cut(s) 124, 145, 166, 221, 392, 430
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 155, 218
Hsp92II CATG 8 cut(s) 36, 254, 314, 356, 542, 574, 652, 665
Kzo9I GATC 5 cut(s) 4, 334, 541, 654, 723
LguI GCTCTTC 2 cut(s) 453, 612
LmnI GCTCC 5 cut(s) 274, 520, 803, 838, 916
LpnPI CCDG 2 cut(s) 438, 449
LweI GCATC 2 cut(s) 171, 316
MaeI CTAG 6 cut(s) 87, 113, 213, 504, 593, 915
MalI GATC 5 cut(s) 6, 336, 543, 656, 725
MboI GATC 5 cut(s) 4, 334, 541, 654, 723
MfeI CAATTG 1 cut(s) 119
MflI RGATCY 1 cut(s) 654
MhlI GDGCHC 2 cut(s) 698, 808
MluCI AATT 6 cut(s) 95, 119, 280, 612, 924, 942
MlyI GAGTC 2 cut(s) 592, 1030
MseI TTAA 5 cut(s) 207, 548, 708, 816, 945
MslI CAYNNNNRTG 2 cut(s) 195, 647
MspI CCGG 1 cut(s) 425
MunI CAATTG 1 cut(s) 119
MwoI GCNNNNNNNGC 3 cut(s) 134, 155, 218
NcoI CCATGG 3 cut(s) 32, 570, 648
NdeII GATC 5 cut(s) 4, 334, 541, 654, 723
NlaIII CATG 8 cut(s) 36, 254, 314, 356, 542, 574, 652, 665
NlaIV GGNNCC 3 cut(s) 276, 423, 912
PagI TCATGA 3 cut(s) 310, 352, 661
PciSI GCTCTTC 2 cut(s) 453, 612
PfeI GAWTC 2 cut(s) 254, 479
PflMI CCANNNNNTGG 1 cut(s) 758
PinAI ACCGGT 1 cut(s) 424
PleI GAGTC 2 cut(s) 591, 1029
PpsI GAGTC 2 cut(s) 591, 1029
PspN4I GGNNCC 3 cut(s) 276, 423, 912
PsuI RGATCY 1 cut(s) 654
RsaI GTAC 1 cut(s) 1053
RsaNI GTAC 1 cut(s) 1052
RseI CAYNNNNRTG 2 cut(s) 195, 647
SapI GCTCTTC 2 cut(s) 453, 612
SaqAI TTAA 5 cut(s) 207, 548, 708, 816, 945
Sau3AI GATC 5 cut(s) 4, 334, 541, 654, 723
SchI GAGTC 2 cut(s) 592, 1030
SduI GDGCHC 2 cut(s) 698, 808
SfaNI GCATC 2 cut(s) 171, 316
SmiMI CAYNNNNRTG 2 cut(s) 195, 647
SmlI CTYRAG 4 cut(s) 132, 174, 884, 1055
SmoI CTYRAG 4 cut(s) 132, 174, 884, 1055
Sse9I AATT 6 cut(s) 95, 119, 280, 612, 924, 942
SspI AATATT 3 cut(s) 434, 690, 978
SspMI CTAG 6 cut(s) 87, 113, 213, 504, 593, 915
StyI CCWWGG 5 cut(s) 32, 570, 623, 648, 672
TaqI TCGA 3 cut(s) 160, 337, 561
TasI AATT 6 cut(s) 95, 119, 280, 612, 924, 942
TfiI GAWTC 2 cut(s) 254, 479
Tru1I TTAA 5 cut(s) 207, 548, 708, 816, 945
Tru9I TTAA 5 cut(s) 207, 548, 708, 816, 945
TspDTI ATGAA 9 cut(s) 267, 327, 341, 369, 393, 471, 486, 621, 970
Van91I CCANNNNNTGG 1 cut(s) 758
XapI RAATTY 1 cut(s) 95
XspI CTAG 6 cut(s) 87, 113, 213, 504, 593, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.