Rmu_co8150358.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8150358.1
OG0000214
Physical Location & Seq
Reverse (-)
2 .. 580
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8150358.1_g000001.1.cds

Sequence Viewer

Length: 579 bp
ctgggagagataccggacccaaaaatagtcctttctaggcgattccctcctccccttgatgatggctttctgcctaatggacgggatcatagtgaaagagccctcctggcctttcatcgctccatctcctgcttggatattcgtcttgccactgatcgagtaagttacgagctctacgcccctaaccactttgctcgccaatttgggttggcccagttggtaccctggcctgtggttgattctgccaattattacacctcttggcggagattagccccacctgggtttgccccctttcagagtcagtttactttgatagtgattcccccttgggtcagagcgttgtaccccctcaaggatgttgatgatgattatgttgattggtggaaagaagtgtccgtgaactgttgggacctgccacatgatgaactcttcgtcctgatctttcgtggcataagtagtcctggtccggaggaccacgagattcttgagcgcttctctaaccctgcagcacaaaccccgcgacctattcttccttctcgcttatcgcgtccaaggatacaaatccacgagcctagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.32

Weight (kDa)

6.07

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 423
Acc65I GGTACC 1 cut(s) 220
AccB1I GGYRCC 1 cut(s) 220
AccII CGCG 2 cut(s) 523, 550
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 2 cut(s) 265, 521
AclWI GGATC 1 cut(s) 93
AfaI GTAC 2 cut(s) 222, 347
AfeI AGCGCT 1 cut(s) 494
AfiI CCNNNNNNNGG 3 cut(s) 264, 282, 355
AjnI CCWGG 4 cut(s) 105, 224, 280, 463
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 174
AlwI GGATC 1 cut(s) 93
Aor13HI TCCGGA 1 cut(s) 469
Aor51HI AGCGCT 1 cut(s) 494
AoxI GGCC 3 cut(s) 108, 210, 227
ApeKI GCWGC 1 cut(s) 509
Asp718I GGTACC 1 cut(s) 220
AspA2I CCTAGG 1 cut(s) 575
AspLEI GCGC 1 cut(s) 495
AspS9I GGNCC 5 cut(s) 16, 211, 412, 467, 475
AvaII GGWCC 4 cut(s) 16, 412, 467, 475
AvrII CCTAGG 1 cut(s) 575
BanI GGYRCC 1 cut(s) 220
BanII GRGCYC 2 cut(s) 103, 174
BauI CACGAG 2 cut(s) 479, 569
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 521
BccI CCATC 2 cut(s) 56, 131
BciT130I CCWGG 4 cut(s) 107, 226, 282, 465
BciVI GTATCC 1 cut(s) 552
BfaI CTAG 2 cut(s) 36, 576
BfmI CTRYAG 1 cut(s) 507
BfoI RGCGCY 1 cut(s) 496
BfuAI ACCTGC 1 cut(s) 423
BfuI GTATCC 1 cut(s) 552
BglI GCCNNNNNGGC 1 cut(s) 107
BisI GCNGC 1 cut(s) 510
BlnI CCTAGG 1 cut(s) 575
BlsI GCNGC 1 cut(s) 511
Bme1390I CCNGG 4 cut(s) 107, 226, 282, 465
Bme18I GGWCC 4 cut(s) 16, 412, 467, 475
BmgT120I GGNCC 5 cut(s) 16, 211, 412, 467, 475
BmiI GGNNCC 3 cut(s) 18, 222, 413
BmrFI CCNGG 4 cut(s) 107, 226, 282, 465
BmrI ACTGGG 1 cut(s) 208
BmuI ACTGGG 1 cut(s) 208
BplI GAGNNNNNCTC 2 cut(s) 482, 514
BpuEI CTTGAG 2 cut(s) 338, 509
BsaBI GATNNNNATC 1 cut(s) 563
BsaJI CCNNGG 5 cut(s) 224, 281, 329, 554, 575
BsaWI WCCGGW 2 cut(s) 13, 469
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 282, 355
Bse1I ACTGG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 563
BseAI TCCGGA 1 cut(s) 469
BseBI CCWGG 4 cut(s) 107, 226, 282, 465
BseDI CCNNGG 5 cut(s) 224, 281, 329, 554, 575
BseGI GGATG 1 cut(s) 364
BseJI GATNNNNATC 1 cut(s) 563
BseLI CCNNNNNNNGG 3 cut(s) 264, 282, 355
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 521
Bsh1236I CGCG 2 cut(s) 523, 550
BshFI GGCC 3 cut(s) 110, 212, 229
BshNI GGYRCC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 174
BsiSI CCGG 2 cut(s) 14, 470
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 3 cut(s) 264, 282, 355
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 3 cut(s) 110, 212, 229
Bsp1286I GDGCHC 2 cut(s) 103, 174
Bsp13I TCCGGA 1 cut(s) 469
Bsp143I GATC 3 cut(s) 85, 154, 441
BspACI CCGC 2 cut(s) 265, 521
BspANI GGCC 3 cut(s) 110, 212, 229
BspEI TCCGGA 1 cut(s) 469
BspFNI CGCG 2 cut(s) 523, 550
BspLI GGNNCC 3 cut(s) 18, 222, 413
BspMAI CTGCAG 1 cut(s) 511
BspMI ACCTGC 1 cut(s) 423
BspPI GGATC 1 cut(s) 93
BspT107I GGYRCC 1 cut(s) 220
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 5 cut(s) 224, 281, 329, 554, 575
BssMI GATC 3 cut(s) 85, 154, 441
BssSI CACGAG 2 cut(s) 479, 569
BssT1I CCWWGG 3 cut(s) 329, 554, 575
Bst2BI CACGAG 2 cut(s) 479, 569
Bst2UI CCWGG 4 cut(s) 107, 226, 282, 465
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 196
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 2 cut(s) 523, 550
BstH2I RGCGCY 1 cut(s) 496
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 3 cut(s) 88, 157, 444
BstMBI GATC 3 cut(s) 85, 154, 441
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 4 cut(s) 107, 226, 282, 465
BstSCI CCNGG 4 cut(s) 105, 224, 280, 463
BstSFI CTRYAG 1 cut(s) 507
BstUI CGCG 2 cut(s) 523, 550
BstV1I GCAGC 1 cut(s) 521
BsuI GTATCC 1 cut(s) 552
BsuRI GGCC 3 cut(s) 110, 212, 229
BtgZI GCGATG 1 cut(s) 101
BtsCI GGATG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 196
CfoI GCGC 1 cut(s) 495
Cfr13I GGNCC 5 cut(s) 16, 211, 412, 467, 475
CseI GACGC 1 cut(s) 539
Csp6I GTAC 2 cut(s) 221, 346
CviAII CATG 1 cut(s) 422
CviJI RGCY 8 cut(s) 66, 101, 110, 172, 212, 229, 275, 574
CviKI_1 RGCY 8 cut(s) 66, 101, 110, 172, 212, 229, 275, 574
CviQI GTAC 2 cut(s) 221, 346
DpnI GATC 3 cut(s) 87, 156, 443
DpnII GATC 3 cut(s) 85, 154, 441
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
EciI GGCGGA 1 cut(s) 280
Ecl136II GAGCTC 1 cut(s) 172
Eco130I CCWWGG 3 cut(s) 329, 554, 575
Eco24I GRGCYC 2 cut(s) 103, 174
Eco47I GGWCC 4 cut(s) 16, 412, 467, 475
Eco47III AGCGCT 1 cut(s) 494
Eco53kI GAGCTC 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 412
EcoRII CCWGG 4 cut(s) 105, 224, 280, 463
EcoT14I CCWWGG 3 cut(s) 329, 554, 575
EcoT38I GRGCYC 2 cut(s) 103, 174
ErhI CCWWGG 3 cut(s) 329, 554, 575
FaeI CATG 1 cut(s) 425
FaiI YATR 4 cut(s) 90, 375, 423, 455
FaqI GGGAC 1 cut(s) 425
FatI CATG 1 cut(s) 421
FauI CCCGC 1 cut(s) 528
Fnu4HI GCNGC 1 cut(s) 510
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 2 cut(s) 103, 174
Fsp4HI GCNGC 1 cut(s) 510
FspBI CTAG 2 cut(s) 36, 576
GlaI GCGC 1 cut(s) 494
GluI GCNGC 1 cut(s) 510
HaeII RGCGCY 1 cut(s) 496
HaeIII GGCC 3 cut(s) 110, 212, 229
HapII CCGG 2 cut(s) 14, 470
HgaI GACGC 1 cut(s) 539
HhaI GCGC 1 cut(s) 495
Hin1II CATG 1 cut(s) 425
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HinfI GANTC 5 cut(s) 42, 239, 301, 322, 484
HpaII CCGG 2 cut(s) 14, 470
Hpy166II GTNNAC 2 cut(s) 309, 403
Hpy188I TCNGA 2 cut(s) 300, 338
Hpy188III TCNNGA 3 cut(s) 439, 470, 488
Hpy8I GTNNAC 2 cut(s) 309, 403
HpyAV CCTTC 1 cut(s) 546
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 1 cut(s) 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
Hsp92II CATG 1 cut(s) 425
HspAI GCGC 1 cut(s) 493
Kpn2I TCCGGA 1 cut(s) 469
KpnI GGTACC 1 cut(s) 224
Kzo9I GATC 3 cut(s) 85, 154, 441
LmnI GCTCC 1 cut(s) 125
Lsp1109I GCAGC 1 cut(s) 521
MaeI CTAG 2 cut(s) 36, 576
MaeIII GTNAC 1 cut(s) 164
MalI GATC 3 cut(s) 87, 156, 443
MboI GATC 3 cut(s) 85, 154, 441
MboII GAAGA 2 cut(s) 424, 524
MhlI GDGCHC 2 cut(s) 103, 174
MluCI AATT 2 cut(s) 200, 247
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 6 cut(s) 57, 60, 113, 268, 362, 466
MroI TCCGGA 1 cut(s) 469
MspI CCGG 2 cut(s) 14, 470
MspR9I CCNGG 4 cut(s) 107, 226, 282, 465
MvaI CCWGG 4 cut(s) 107, 226, 282, 465
MvnI CGCG 2 cut(s) 523, 550
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 3 cut(s) 85, 154, 441
NlaIII CATG 1 cut(s) 425
NlaIV GGNNCC 3 cut(s) 18, 222, 413
PcsI WCGNNNNNNNCGW 1 cut(s) 547
PfeI GAWTC 4 cut(s) 42, 239, 322, 484
PkrI GCNGC 1 cut(s) 511
PleI GAGTC 1 cut(s) 309
PpsI GAGTC 1 cut(s) 309
PpuMI RGGWCCY 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 412
Psp6I CCWGG 4 cut(s) 105, 224, 280, 463
PspGI CCWGG 4 cut(s) 105, 224, 280, 463
PspN4I GGNNCC 3 cut(s) 18, 222, 413
PspPI GGNCC 5 cut(s) 16, 211, 412, 467, 475
PspPPI RGGWCCY 1 cut(s) 412
PstI CTGCAG 1 cut(s) 511
RsaI GTAC 2 cut(s) 222, 347
RsaNI GTAC 2 cut(s) 221, 346
SacI GAGCTC 1 cut(s) 174
SatI GCNGC 1 cut(s) 510
Sau3AI GATC 3 cut(s) 85, 154, 441
Sau96I GGNCC 5 cut(s) 16, 211, 412, 467, 475
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 4 cut(s) 107, 226, 282, 465
SduI GDGCHC 2 cut(s) 103, 174
SetI ASST 5 cut(s) 174, 260, 283, 417, 529
SfcI CTRYAG 1 cut(s) 507
SinI GGWCC 4 cut(s) 16, 412, 467, 475
SmlI CTYRAG 2 cut(s) 353, 488
SmoI CTYRAG 2 cut(s) 353, 488
Sse9I AATT 2 cut(s) 200, 247
SsiI CCGC 2 cut(s) 265, 521
SspMI CTAG 2 cut(s) 36, 576
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 4 cut(s) 105, 224, 280, 463
StyI CCWWGG 3 cut(s) 329, 554, 575
TaaI ACNGT 1 cut(s) 407
TaqI TCGA 1 cut(s) 157
TasI AATT 2 cut(s) 200, 247
TfiI GAWTC 4 cut(s) 42, 239, 322, 484
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 509
TspDTI ATGAA 2 cut(s) 104, 441
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 4 cut(s) 16, 412, 467, 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmaJI CCTAGG 1 cut(s) 575
XspI CTAG 2 cut(s) 36, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.