Rroxscaffold_4G00324400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000214
Physical Location & Seq
Forward (+)
55836206 .. 55837385
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324400.1

Sequence Viewer

Length: 477 bp
ATGGGCTTTGGTGGCGGTGATAGTCAATGGAGTCCGGGTCCCACACCTCGCGATCGTTTTCCGGATGATGTTATGGCCTATTATGGGCTTCCCATCCGCTGTCCCATAGCGGCTTTTCGGCAGGTGCCTGGTGATTTTAGCAGTTGGGGACCAAGGAAGAAAGTGGGCTTTTGGCCTACCGTTGCTCCCGAGGAAAATGTTTGGTATCAAGAGGTCGAGCGAGAGATTTGGCCGATGGGATGCGGCGATTCCCTCCTCCCCTTGATGATGGCTTTCGCCGGTGGACGGGATCATAGTGAAAGAGCCCTCTTGGCCTTTCGTCGCGTCATCTCTCGCTTGGATATTCGTCTTGCCACCGATCGCGTAAGTTACGAGCTCTACGCCCCTAACCACTTTGCTCGCCAATTTGGGTTGGCCCGCTTGGTACCACGGCCTTTGGTTGATTACGCAATTACTACACCTCTTGGCGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.79

Weight (kDa)

6.73

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
Acc65I GGTACC 1 cut(s) 424
AccB1I GGYRCC 2 cut(s) 124, 424
AccII CGCG 3 cut(s) 51, 324, 363
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 6 cut(s) 15, 97, 110, 243, 418, 468
AclWI GGATC 1 cut(s) 297
AcoI YGGCCR 1 cut(s) 230
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 3 cut(s) 84, 285, 467
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw21I GWGCWC 1 cut(s) 378
AlwI GGATC 1 cut(s) 297
Ama87I CYCGRG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 6 cut(s) 75, 173, 230, 312, 414, 431
Asp718I GGTACC 1 cut(s) 424
AspS9I GGNCC 3 cut(s) 38, 149, 415
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 2 cut(s) 29, 143
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 2 cut(s) 38, 149
BanI GGYRCC 2 cut(s) 124, 424
BanII GRGCYC 2 cut(s) 307, 378
Bbv12I GWGCWC 1 cut(s) 378
BccI CCATC 3 cut(s) 101, 229, 262
BceAI ACGGC 1 cut(s) 446
BciT130I CCWGG 1 cut(s) 129
BcnI CCSGG 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 112
BglI GCCNNNNNGGC 1 cut(s) 311
BisI GCNGC 2 cut(s) 111, 244
BlsI GCNGC 2 cut(s) 112, 245
Bme1390I CCNGG 2 cut(s) 36, 129
Bme18I GGWCC 2 cut(s) 38, 149
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 38, 149, 415
BmiI GGNNCC 5 cut(s) 39, 40, 126, 150, 426
BmrFI CCNGG 2 cut(s) 36, 129
BmsI GCATC 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 36
BsaJI CCNNGG 3 cut(s) 152, 189, 428
BsaWI WCCGGW 1 cut(s) 61
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 169, 199
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 285, 467
Bse118I RCCGGY 1 cut(s) 278
BseAI TCCGGA 1 cut(s) 61
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 3 cut(s) 152, 189, 428
BseGI GGATG 3 cut(s) 70, 93, 245
BseLI CCNNNNNNNGG 3 cut(s) 84, 285, 467
BseRI GAGGAG 1 cut(s) 245
Bsh1236I CGCG 3 cut(s) 51, 324, 363
Bsh1285I CGRYCG 2 cut(s) 55, 361
BshFI GGCC 6 cut(s) 77, 175, 232, 314, 416, 433
BshNI GGYRCC 2 cut(s) 124, 424
BsiEI CGRYCG 2 cut(s) 55, 361
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 3 cut(s) 35, 62, 279
BslFI GGGAC 3 cut(s) 24, 87, 162
BslI CCNNNNNNNGG 3 cut(s) 84, 285, 467
BsmFI GGGAC 3 cut(s) 24, 87, 162
BsnI GGCC 6 cut(s) 77, 175, 232, 314, 416, 433
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 307, 378
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 3 cut(s) 52, 289, 358
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 6 cut(s) 15, 97, 110, 243, 418, 468
BspANI GGCC 6 cut(s) 77, 175, 232, 314, 416, 433
BspEI TCCGGA 1 cut(s) 61
BspFNI CGCG 3 cut(s) 51, 324, 363
BspLI GGNNCC 5 cut(s) 39, 40, 126, 150, 426
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 297
BspT107I GGYRCC 2 cut(s) 124, 424
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 3 cut(s) 152, 189, 428
BssMI GATC 3 cut(s) 52, 289, 358
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 400, 418
BstDSI CCRYGG 1 cut(s) 428
BstF5I GGATG 3 cut(s) 70, 93, 245
BstFNI CGCG 3 cut(s) 51, 324, 363
BstKTI GATC 3 cut(s) 55, 292, 361
BstMBI GATC 3 cut(s) 52, 289, 358
BstMCI CGRYCG 2 cut(s) 55, 361
BstMWI GCNNNNNNNGC 2 cut(s) 12, 311
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 34, 127
BstUI CGCG 3 cut(s) 51, 324, 363
BsuRI GGCC 6 cut(s) 77, 175, 232, 314, 416, 433
BtgI CCRYGG 1 cut(s) 428
BtsCI GGATG 3 cut(s) 70, 93, 245
BtuMI TCGCGA 1 cut(s) 51
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 400, 418
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 3 cut(s) 38, 149, 415
CseI GACGC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 425
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviQI GTAC 1 cut(s) 425
DpnI GATC 3 cut(s) 54, 291, 360
DpnII GATC 3 cut(s) 52, 289, 358
EaeI YGGCCR 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 1 cut(s) 152
Eco24I GRGCYC 2 cut(s) 307, 378
Eco47I GGWCC 2 cut(s) 38, 149
Eco53kI GAGCTC 1 cut(s) 376
Eco88I CYCGRG 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 152
EcoT38I GRGCYC 2 cut(s) 307, 378
ErhI CCWWGG 1 cut(s) 152
FaiI YATR 4 cut(s) 74, 84, 107, 294
FaqI GGGAC 3 cut(s) 24, 87, 162
FauI CCCGC 1 cut(s) 425
Fnu4HI GCNGC 2 cut(s) 111, 244
FokI GGATG 3 cut(s) 77, 80, 252
FriOI GRGCYC 2 cut(s) 307, 378
Fsp4HI GCNGC 2 cut(s) 111, 244
GluI GCNGC 2 cut(s) 111, 244
HaeIII GGCC 6 cut(s) 77, 175, 232, 314, 416, 433
HapII CCGG 3 cut(s) 35, 62, 279
HgaI GACGC 1 cut(s) 313
HinfI GANTC 2 cut(s) 31, 248
HpaII CCGG 3 cut(s) 35, 62, 279
HphI GGTGA 2 cut(s) 29, 143
Hpy166II GTNNAC 1 cut(s) 284
Hpy188III TCNNGA 4 cut(s) 50, 62, 188, 209
Hpy8I GTNNAC 1 cut(s) 284
Hpy99I CGWCG 1 cut(s) 324
HpyCH4III ACNGT 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 311
KflI GGGWCCC 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 61
KpnI GGTACC 1 cut(s) 428
Kzo9I GATC 3 cut(s) 52, 289, 358
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 6 cut(s) 48, 75, 107, 114, 141, 292
LweI GCATC 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 368
MalI GATC 3 cut(s) 54, 291, 360
MboI GATC 3 cut(s) 52, 289, 358
MboII GAAGA 1 cut(s) 169
MhlI GDGCHC 2 cut(s) 307, 378
MluCI AATT 2 cut(s) 404, 450
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 7 cut(s) 57, 184, 205, 263, 266, 317, 471
MroI TCCGGA 1 cut(s) 61
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 3 cut(s) 35, 62, 279
MspR9I CCNGG 2 cut(s) 36, 129
MvaI CCWGG 1 cut(s) 129
MvnI CGCG 3 cut(s) 51, 324, 363
MwoI GCNNNNNNNGC 2 cut(s) 12, 311
NciI CCSGG 1 cut(s) 36
NdeII GATC 3 cut(s) 52, 289, 358
NlaIV GGNNCC 5 cut(s) 39, 40, 126, 150, 426
NruI TCGCGA 1 cut(s) 51
PaqCI CACCTGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 2 cut(s) 112, 245
Ple19I CGATCG 2 cut(s) 55, 361
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 5 cut(s) 39, 40, 126, 150, 426
PspPI GGNCC 3 cut(s) 38, 149, 415
PspPPI RGGWCCY 1 cut(s) 38
PvuI CGATCG 2 cut(s) 55, 361
RruI TCGCGA 1 cut(s) 51
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SacI GAGCTC 1 cut(s) 378
SatI GCNGC 2 cut(s) 111, 244
Sau3AI GATC 3 cut(s) 52, 289, 358
Sau96I GGNCC 3 cut(s) 38, 149, 415
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 36, 129
SduI GDGCHC 2 cut(s) 307, 378
SetI ASST 5 cut(s) 49, 126, 216, 378, 463
SfaNI GCATC 1 cut(s) 230
SgrAI CRCCGGYG 1 cut(s) 278
SinI GGWCC 2 cut(s) 38, 149
Sse9I AATT 2 cut(s) 404, 450
SsiI CCGC 6 cut(s) 15, 97, 110, 243, 418, 468
SstI GAGCTC 1 cut(s) 378
StyD4I CCNGG 2 cut(s) 34, 127
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 216
TasI AATT 2 cut(s) 404, 450
TauI GCSGC 2 cut(s) 113, 246
TfiI GAWTC 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 38, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.