Rroxscaffold_7G00203170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000214
Physical Location & Seq
Reverse (-)
51716263 .. 51716706
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203170.1

Sequence Viewer

Length: 444 bp
ATGCCATACTCGTATCCGGTACTCGCAGAAGATTCCCGCCCCCACTTGAACATGGGTTCTTTCACGGGGACACTAAATATAGCGATCGTGCGCTTGGTCTTTCGCCACACAATCTCCTCGCTCGATATTAGGCTCGCGGCCGATGACATCGGTTATGAGCTTTGTGCTCCTAATCACTTCGCTCGCCAACTTGGGCTGGCCCGCTTAGTGCCTTTCCTCTTTACGATGCTTGGAACTACAAATAAGCCCTGCAACCGGACCTCCCGGCCCAAAGCATGCTCTCTCTCGGTCAATCTCCCCAACCGGGTTGACGAAATTGTCCCCGGTGACGGAGCCGCCGAGGATTACGACTACCGGTGGTCTCAAGTTTCGTTAACCGCCGGAAGCAACGGGGATGACGAGCTCTTTTGCGATCCTCTTCCAAGACTTGAGGTACCCCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.25

Weight (kDa)

5.25

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
Acc65I GGTACC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 433
AccII CGCG 1 cut(s) 137
AciI CCGC 5 cut(s) 37, 137, 202, 336, 378
AclWI GGATC 1 cut(s) 407
AcoI YGGCCR 1 cut(s) 138
AfaI GTAC 2 cut(s) 21, 435
AfiI CCNNNNNNNGG 3 cut(s) 255, 304, 329
AgeI ACCGGT 1 cut(s) 354
AgsI TTSAA 1 cut(s) 49
AluBI AGCT 2 cut(s) 160, 403
AluI AGCT 2 cut(s) 160, 403
Alw21I GWGCWC 2 cut(s) 169, 405
Alw26I GTCTC 1 cut(s) 366
AlwI GGATC 1 cut(s) 407
AoxI GGCC 3 cut(s) 138, 198, 266
AsiGI ACCGGT 1 cut(s) 354
Asp718I GGTACC 1 cut(s) 433
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 3 cut(s) 199, 258, 267
AsuC2I CCSGG 3 cut(s) 265, 305, 324
AsuHPI GGTGA 1 cut(s) 338
AvaII GGWCC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 405
Bbv12I GWGCWC 2 cut(s) 169, 405
BciVI GTATCC 1 cut(s) 24
BcnI CCSGG 3 cut(s) 265, 305, 324
BcoDI GTCTC 1 cut(s) 366
BfuI GTATCC 1 cut(s) 24
BisI GCNGC 2 cut(s) 138, 336
BlsI GCNGC 2 cut(s) 139, 337
Bme1390I CCNGG 3 cut(s) 265, 305, 324
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 3 cut(s) 199, 258, 267
BmiI GGNNCC 2 cut(s) 334, 435
BmrFI CCNGG 3 cut(s) 265, 305, 324
BmsI GCATC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 348
BpuMI CCSGG 3 cut(s) 265, 305, 324
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 322, 339
BsaWI WCCGGW 3 cut(s) 16, 255, 354
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 245, 275
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 304, 329
Bse118I RCCGGY 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 322, 339
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 3 cut(s) 255, 304, 329
BseRI GAGGAG 1 cut(s) 106
BseX3I CGGCCG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 137
Bsh1285I CGRYCG 2 cut(s) 87, 141
BshFI GGCC 3 cut(s) 140, 200, 268
BshNI GGYRCC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 354
BsiEI CGRYCG 2 cut(s) 87, 141
BsiHKAI GWGCWC 2 cut(s) 169, 405
BsiSI CCGG 7 cut(s) 17, 256, 265, 304, 324, 355, 381
BslFI GGGAC 2 cut(s) 82, 305
BslI CCNNNNNNNGG 3 cut(s) 255, 304, 329
BsmAI GTCTC 1 cut(s) 366
BsmFI GGGAC 2 cut(s) 82, 305
BsnI GGCC 3 cut(s) 140, 200, 268
Bso31I GGTCTC 1 cut(s) 366
Bsp1286I GDGCHC 2 cut(s) 169, 405
Bsp143I GATC 2 cut(s) 84, 412
BspACI CCGC 5 cut(s) 37, 137, 202, 336, 378
BspANI GGCC 3 cut(s) 140, 200, 268
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 2 cut(s) 334, 435
BspPI GGATC 1 cut(s) 407
BspT107I GGYRCC 1 cut(s) 433
BspTNI GGTCTC 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 354
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 2 cut(s) 322, 339
BssMI GATC 2 cut(s) 84, 412
Bst6I CTCTTC 1 cut(s) 423
BstC8I GCNNGC 5 cut(s) 135, 184, 198, 202, 277
BstDEI CTNAG 1 cut(s) 205
BstF5I GGATG 1 cut(s) 400
BstFNI CGCG 1 cut(s) 137
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 2 cut(s) 87, 415
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 2 cut(s) 84, 412
BstMCI CGRYCG 2 cut(s) 87, 141
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 3 cut(s) 263, 303, 322
BstUI CGCG 1 cut(s) 137
BstZI CGGCCG 1 cut(s) 138
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 3 cut(s) 140, 200, 268
BtsCI GGATG 1 cut(s) 400
Cac8I GCNNGC 5 cut(s) 135, 184, 198, 202, 277
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 3 cut(s) 199, 258, 267
Csp6I GTAC 2 cut(s) 20, 434
CspAI ACCGGT 1 cut(s) 354
CviAII CATG 2 cut(s) 52, 276
CviJI RGCY 9 cut(s) 133, 140, 160, 196, 200, 247, 268, 335, 403
CviKI_1 RGCY 9 cut(s) 133, 140, 160, 196, 200, 247, 268, 335, 403
CviQI GTAC 2 cut(s) 20, 434
DdeI CTNAG 1 cut(s) 205
DpnI GATC 2 cut(s) 86, 414
DpnII GATC 2 cut(s) 84, 412
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
EaeI YGGCCR 1 cut(s) 138
EagI CGGCCG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Ecl136II GAGCTC 1 cut(s) 403
EclXI CGGCCG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 405
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 258
Eco52I CGGCCG 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 403
EcoICRI GAGCTC 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 405
FaeI CATG 2 cut(s) 55, 279
FaiI YATR 6 cut(s) 7, 53, 80, 156, 277, 442
FaqI GGGAC 2 cut(s) 82, 305
FatI CATG 2 cut(s) 51, 275
FauI CCCGC 2 cut(s) 44, 209
Fnu4HI GCNGC 2 cut(s) 138, 336
FokI GGATG 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 2 cut(s) 138, 336
GlaI GCGC 1 cut(s) 92
GluI GCNGC 2 cut(s) 138, 336
HaeIII GGCC 3 cut(s) 140, 200, 268
HapII CCGG 7 cut(s) 17, 256, 265, 304, 324, 355, 381
HhaI GCGC 1 cut(s) 93
Hin1II CATG 2 cut(s) 55, 279
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 2 cut(s) 310, 375
HindII GTYRAC 2 cut(s) 310, 375
HinfI GANTC 1 cut(s) 32
HpaI GTTAAC 1 cut(s) 375
HpaII CCGG 7 cut(s) 17, 256, 265, 304, 324, 355, 381
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 2 cut(s) 310, 375
Hpy8I GTNNAC 2 cut(s) 310, 375
HpyCH4V TGCA 1 cut(s) 252
HpyF3I CTNAG 1 cut(s) 205
Hsp92II CATG 2 cut(s) 55, 279
HspAI GCGC 1 cut(s) 91
KpnI GGTACC 1 cut(s) 437
KspAI GTTAAC 1 cut(s) 375
Kzo9I GATC 2 cut(s) 84, 412
LmnI GCTCC 2 cut(s) 172, 332
LpnPI CCDG 9 cut(s) 30, 182, 262, 269, 278, 317, 337, 368, 394
LweI GCATC 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 326
MalI GATC 2 cut(s) 86, 414
MboI GATC 2 cut(s) 84, 412
MboII GAAGA 2 cut(s) 41, 410
MhlI GDGCHC 2 cut(s) 169, 405
MluCI AATT 1 cut(s) 315
MnlI CCTC 6 cut(s) 127, 227, 271, 334, 424, 426
MseI TTAA 1 cut(s) 374
MspI CCGG 7 cut(s) 17, 256, 265, 304, 324, 355, 381
MspR9I CCNGG 3 cut(s) 265, 305, 324
MvnI CGCG 1 cut(s) 137
NciI CCSGG 3 cut(s) 265, 305, 324
NdeII GATC 2 cut(s) 84, 412
NlaIII CATG 2 cut(s) 55, 279
NlaIV GGNNCC 2 cut(s) 334, 435
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 279
PaeI GCATGC 1 cut(s) 279
PcsI WCGNNNNNNNCGW 2 cut(s) 336, 396
PfeI GAWTC 1 cut(s) 32
PinAI ACCGGT 1 cut(s) 354
PkrI GCNGC 2 cut(s) 139, 337
Ple19I CGATCG 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 405
PspN4I GGNNCC 2 cut(s) 334, 435
PspPI GGNCC 3 cut(s) 199, 258, 267
PvuI CGATCG 1 cut(s) 87
RsaI GTAC 2 cut(s) 21, 435
RsaNI GTAC 2 cut(s) 20, 434
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 2 cut(s) 138, 336
Sau3AI GATC 2 cut(s) 84, 412
Sau96I GGNCC 3 cut(s) 199, 258, 267
ScrFI CCNGG 3 cut(s) 265, 305, 324
SduI GDGCHC 2 cut(s) 169, 405
SetI ASST 4 cut(s) 162, 263, 405, 435
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 363, 428
SmoI CTYRAG 2 cut(s) 363, 428
SphI GCATGC 1 cut(s) 279
Sse9I AATT 1 cut(s) 315
SsiI CCGC 5 cut(s) 37, 137, 202, 336, 378
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 3 cut(s) 263, 303, 322
TaqI TCGA 1 cut(s) 123
TaqII GACCGA 1 cut(s) 277
TasI AATT 1 cut(s) 315
TauI GCSGC 2 cut(s) 140, 338
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TseFI GTSAC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 326
TspGWI ACGGA 1 cut(s) 345
VpaK11BI GGWCC 1 cut(s) 258
XceI RCATGY 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.