Rmu_sc0002972.1_g000004

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002972.1
OG0000214
Physical Location & Seq
Forward (+)
9647 .. 14272
4626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002972.1_g000004.1.cds

Sequence Viewer

Length: 2850 bp
atggcatccaagaaaccattcgttatcgatcaggcagatgaaatcactgagaaagccgcattcaactggcggactaacatgagtattcgatgtagacgtcaaaccagagaggagagaagccgactgatgggctttggtggcggtgatagtcaagcgagtctgggtcccacacctcgcgatcgtttgccagatgatgctatggcctattatgggcttcccatccgccgtcccatagcggctcttcggcaagtgcctggtgattttagcagttggggaccaaggaggaaagtgagcttttggcctaccgtcactcccgaggaaaaggtttggtatcaggaggtccgagcgagagatttggaccgatgggacgcggtgggtatcacccaaaccatcgatctatgcttctgtctgccctataatactagccctgcaccgctagccgccgctctttgcttctggaacacctccagcaatacattcgatttccggtttgggcagatgagcataactctgctggatgttcttaccatcacggggttgcccattgactttgacccctatgtgcatggtcagtttgatggcattcaattttctttgagaatggatatgctatgcttctgtcttccccataatactagcgcggcaccgctagccgccgctctttgcttctgggacacctccagcaatacattcgatttccggtttgggcaaatgagcataattttgctggatgttcttaccatcatggggttgcctattgattttgacccctatgtgcatggtcaatttgatggcattcaatttcctttgagaatggatatggctggtcgagggcatcacagcaaatttatctttgcacccagcgtgaccatacaggagatttatttcactcccttccgtcgcggtgatattccaaaggaacctccagttgattcccttttgaggaactggctttgccgcaatgtaaggtatcgagctccaccctactccgagtgttttatttatttgtacttgctgggagagatgccggacccaaaaatagtcctttctaggcgtttccctcctccccttgatgatggctttctgcccagtggacgggatcatagtgaaagagtcctcctggcctttcgtcgcgccatctcctgcttggatattcgtcttgccactgatcgcgtaagttacgagctctactcccctaaccactttgctcgccaatttgggttggcccagttggtaccctggcctctggttgattctgccaattattacacttcttggcggagattagccccacctgggtctgccccctttcagagtcagtttactttgatagtgattcccccttgggtcagagcgctataccccctcaacgatgtcgatgatgactatgctgattggtggaaagaagtgtcagtgaactgttgggacctgccacatgacgaactcttcgtcctgatctttcgtggcatgagtagccctggtccggaggaccacgagattcttgagctgttctccaaacctgcagaacaacccccgcgacctattctaccttctcgctcattgcgtccagggatacaaatccacgagcctagggcaacacaaactacccggagcaggacagcctctattcaggccgggaaacaaaaggcaatagcagaggagacttctgagggagaatcttcacatgatgaagatcctgctgaggccactgctgtctttgcttgcaaacgcgatcgagctcaactcgtcgaagaaagttttaaagatgatgaacctctgggaatgcgactggtccgtcaaaggaccactgatccctctcgcctgagcgaggctggaccctcagccactgtagaagagccaattctctcgctagttcaagcttcaactaaccctatggcacctctcccatctcccactacagagcatttgcaaggtcctaccattttaatatcgatctctgatgactactcctcggaggatgaaagcgtggaaagtcactctgagacttctgccgcttatgaggaactgatgacgatagagattgtcgcggcactagaggttcaagaggtgaatgaggcggggcctcttcctcttggtgaccacgtatcagatattgacccgacagctcgagagggtcctaacggcggaacagtcgccccagagatggaaaatgatactaacggtggtggtgccccccaagtctcgcaaacaaatgagacaaccgtcgaagctgagggctctgtgcttgaatctgctccacttacccatgggatagaccaacctattgaagatgaagaaactgaagaggctgtccatccttttgcattggtggttcgtgatcctgtagtgcctctaccgcctcctcctcctaccagatttgagagattgatgagggtgttggaggtaactcctccttctgctgtggatgaggctaaaatggtgcttcgcgaacatctgggtcctcaggtattggagactgacattctcccgcgagtcttagaagccctaaggtatctttgccaggagaaggtattgaccctgcagcaatttagtgctattaatgatctgttgaatgaacttgatatggcccgccgacgtcaatcggccgcgaacaaccaggctcacaatgctcgagaggctttgaataacctttcccaagaaatggacatcccccgcggtgtctccccttctcatggatactggcgttggccaaaccaatgttgtattcctctgtcgtttccacgtaaagggggctccggtactcctcttttcccttccctgaagtctgccctccttgagataatggcgcggctcaatccgacgttggattccatagctgcttccgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

949

Amino Acids

106.19

Weight (kDa)

4.91

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1794
AatII GACGTC 2 cut(s) 100, 2599
Acc36I ACCTGC 2 cut(s) 1437, 1528
Acc65I GGTACC 1 cut(s) 1234
AccB1I GGYRCC 4 cut(s) 643, 1234, 1897, 2189
AccB7I CCANNNNNTGG 1 cut(s) 2662
AccBSI CCGCTC 2 cut(s) 446, 659
AccI GTMKAC 1 cut(s) 94
AccIII TCCGGA 1 cut(s) 1483
AclWI GGATC 4 cut(s) 1107, 1688, 1805, 2333
AcoI YGGCCR 2 cut(s) 2604, 2708
AcsI RAATTY 1 cut(s) 845
AcuI CTGAAG 2 cut(s) 2322, 2801
AcyI GRCGYC 2 cut(s) 97, 2596
AfaI GTAC 3 cut(s) 1010, 1236, 2761
AfeI AGCGCT 1 cut(s) 1356
AjnI CCWGG 8 cut(s) 253, 1119, 1238, 1294, 1477, 1567, 2520, 2616
AjuI GAANNNNNNNTTGG 3 cut(s) 34, 2709, 2741
AloI GAACNNNNNNTCC 2 cut(s) 1434, 1466
AluBI AGCT 9 cut(s) 294, 977, 1186, 1507, 1739, 1880, 2126, 2231, 2837
AluI AGCT 9 cut(s) 294, 977, 1186, 1507, 1739, 1880, 2126, 2231, 2837
Alw21I GWGCWC 3 cut(s) 979, 1188, 1741
Alw26I GTCTC 6 cut(s) 1655, 1997, 2206, 2210, 2468, 2686
AlwI GGATC 4 cut(s) 1107, 1688, 1805, 2333
AlwNI CAGNNNCTG 1 cut(s) 1847
Ama87I CYCGRG 3 cut(s) 314, 2127, 2631
Aor13HI TCCGGA 1 cut(s) 1483
Aor51HI AGCGCT 1 cut(s) 1356
ApeKI GCWGC 2 cut(s) 2542, 2837
ApoI RAATTY 1 cut(s) 845
ArsI GACNNNNNNTTYG 4 cut(s) 1430, 1434, 1462, 1466
AseI ATTAAT 1 cut(s) 2559
Asp700I GAANNNNTTC 1 cut(s) 17
Asp718I GGTACC 1 cut(s) 1234
AspA2I CCTAGG 1 cut(s) 1589
AspLEI GCGC 4 cut(s) 641, 1136, 1357, 2809
AsuC2I CCSGG 2 cut(s) 1609, 1636
AsuHPI GGTGA 6 cut(s) 155, 269, 373, 917, 2080, 2108
AsuNHI GCTAGC 2 cut(s) 436, 649
AvaI CYCGRG 3 cut(s) 314, 2127, 2631
AvrII CCTAGG 1 cut(s) 1589
AxyI CCTNAGG 2 cut(s) 2463, 2507
BaeGI GKGCMC 1 cut(s) 2194
BaeI ACNNNNGTAYC 2 cut(s) 2689, 2722
BalI TGGCCA 1 cut(s) 2710
BanI GGYRCC 4 cut(s) 643, 1234, 1897, 2189
BanII GRGCYC 5 cut(s) 979, 1188, 1741, 2240, 2756
BauI CACGAG 2 cut(s) 1493, 1583
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 3 cut(s) 979, 1188, 1741
BbvCI CCTCAGC 3 cut(s) 1701, 1840, 2232
BbvI GCAGC 2 cut(s) 2554, 2824
BceAI ACGGC 2 cut(s) 210, 2158
BcgI CGANNNNNNTGC 4 cut(s) 460, 494, 673, 707
BciT130I CCWGG 8 cut(s) 255, 1121, 1240, 1296, 1479, 1569, 2522, 2618
BciVI GTATCC 2 cut(s) 1566, 2690
BcnI CCSGG 2 cut(s) 1609, 1636
BcoDI GTCTC 6 cut(s) 1655, 1997, 2206, 2210, 2468, 2686
BfaI CTAG 8 cut(s) 423, 437, 636, 650, 1050, 1590, 1871, 2054
BfmI CTRYAG 5 cut(s) 1521, 1848, 1917, 2343, 2540
BfoI RGCGCY 1 cut(s) 1358
BfuAI ACCTGC 2 cut(s) 1437, 1528
BfuI GTATCC 2 cut(s) 1566, 2690
BlnI CCTAGG 1 cut(s) 1589
BmeT110I CYCGRG 3 cut(s) 314, 2127, 2631
BmrI ACTGGG 2 cut(s) 1083, 1222
BmsI GCATC 4 cut(s) 14, 184, 844, 1014
BmtI GCTAGC 2 cut(s) 440, 653
BmuI ACTGGG 2 cut(s) 1083, 1222
BoxI GACNNNNGTC 1 cut(s) 2222
BpiI GAAGAC 1 cut(s) 614
BplI GAGNNNNNCTC 8 cut(s) 493, 525, 1175, 1207, 1496, 1528, 1728, 1760
BpmI CTGGAG 3 cut(s) 451, 664, 909
Bpu10I CCTNAGC 4 cut(s) 1701, 1823, 1840, 2232
BpuEI CTTGAG 2 cut(s) 1523, 2816
BpuMI CCSGG 2 cut(s) 1609, 1636
Bsa29I ATCGAT 3 cut(s) 27, 393, 1952
BsaAI YACGTR 2 cut(s) 2104, 2744
BsaBI GATNNNNATC 2 cut(s) 1577, 1692
BsaHI GRCGYC 2 cut(s) 97, 2596
BsaWI WCCGGW 4 cut(s) 486, 699, 1483, 2756
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bse1I ACTGG 7 cut(s) 71, 926, 953, 1089, 1228, 1794, 2705
Bse21I CCTNAGG 2 cut(s) 2463, 2507
Bse3DI GCAATG 2 cut(s) 967, 1559
Bse8I GATNNNNATC 2 cut(s) 1577, 1692
BseAI TCCGGA 1 cut(s) 1483
BseBI CCWGG 8 cut(s) 255, 1121, 1240, 1296, 1479, 1569, 2522, 2618
BseCI ATCGAT 3 cut(s) 27, 393, 1952
BseGI GGATG 8 cut(s) 5, 219, 523, 736, 1984, 2314, 2431, 2667
BseJI GATNNNNATC 2 cut(s) 1577, 1692
BseMI GCAATG 2 cut(s) 967, 1559
BseMII CTCAG 8 cut(s) 39, 1659, 1692, 1814, 1854, 1992, 2223, 2477
BseNI ACTGG 7 cut(s) 71, 926, 953, 1089, 1228, 1794, 2705
BseRI GAGGAG 8 cut(s) 125, 1053, 1673, 1960, 2352, 2355, 2400, 2754
BseSI GKGCMC 1 cut(s) 2194
BseX3I CGGCCG 1 cut(s) 2604
BseXI GCAGC 2 cut(s) 2554, 2824
BseYI CCCAGC 2 cut(s) 860, 1015
BsgI GTGCAG 1 cut(s) 414
Bsh1285I CGRYCG 3 cut(s) 181, 1735, 2607
BshNI GGYRCC 4 cut(s) 643, 1234, 1897, 2189
BshVI ATCGAT 3 cut(s) 27, 393, 1952
BsiEI CGRYCG 3 cut(s) 181, 1735, 2607
BsiHKAI GWGCWC 3 cut(s) 979, 1188, 1741
BsiHKCI CYCGRG 3 cut(s) 314, 2127, 2631
BsiSI CCGG 7 cut(s) 487, 700, 1028, 1484, 1609, 1635, 2757
BslFI GGGAC 6 cut(s) 150, 213, 288, 380, 686, 1439
BsmAI GTCTC 6 cut(s) 1655, 1997, 2206, 2210, 2468, 2686
BsmFI GGGAC 6 cut(s) 150, 213, 288, 380, 686, 1439
BsmI GAATGC 4 cut(s) 59, 582, 795, 1788
BsoBI CYCGRG 3 cut(s) 314, 2127, 2631
Bsp1286I GDGCHC 6 cut(s) 979, 1188, 1741, 2194, 2240, 2756
Bsp13I TCCGGA 1 cut(s) 1483
Bsp19I CCATGG 1 cut(s) 2266
Bsp68I TCGCGA 2 cut(s) 177, 2448
BspCNI CTCAG 8 cut(s) 40, 1660, 1693, 1815, 1853, 1993, 2224, 2476
BspDI ATCGAT 3 cut(s) 27, 393, 1952
BspEI TCCGGA 1 cut(s) 1483
BspMAI CTGCAG 2 cut(s) 1525, 2544
BspMI ACCTGC 2 cut(s) 1437, 1528
BspOI GCTAGC 2 cut(s) 440, 653
BspPI GGATC 4 cut(s) 1107, 1688, 1805, 2333
BspQI GCTCTTC 2 cut(s) 246, 1848
BspT107I GGYRCC 4 cut(s) 643, 1234, 1897, 2189
BsrBI CCGCTC 2 cut(s) 446, 659
BsrDI GCAATG 2 cut(s) 967, 1559
BsrI ACTGG 7 cut(s) 71, 926, 953, 1089, 1228, 1794, 2705
BssNI GRCGYC 2 cut(s) 97, 2596
BssSI CACGAG 2 cut(s) 1493, 1583
BssT1I CCWWGG 4 cut(s) 278, 1343, 1589, 2266
Bst2BI CACGAG 2 cut(s) 1493, 1583
Bst2UI CCWGG 8 cut(s) 255, 1121, 1240, 1296, 1479, 1569, 2522, 2618
Bst4CI ACNGT 6 cut(s) 307, 1421, 1849, 2152, 2183, 2224
Bst6I CTCTTC 5 cut(s) 246, 1451, 1848, 2091, 2298
BstACI GRCGYC 2 cut(s) 97, 2596
BstBAI YACGTR 2 cut(s) 2104, 2744
BstC8I GCNNGC 5 cut(s) 438, 651, 1210, 1723, 2590
BstDSI CCRYGG 2 cut(s) 2266, 2674
BstEII GGTNACC 1 cut(s) 2096
BstENI CCTNNNNNAGG 1 cut(s) 1826
BstF5I GGATG 8 cut(s) 5, 219, 523, 736, 1984, 2314, 2431, 2667
BstH2I RGCGCY 1 cut(s) 1358
BstHHI GCGC 4 cut(s) 641, 1136, 1357, 2809
BstMAI GTCTC 6 cut(s) 1655, 1997, 2206, 2210, 2468, 2686
BstMCI CGRYCG 3 cut(s) 181, 1735, 2607
BstMWI GCNNNNNNNGC 9 cut(s) 138, 437, 650, 1473, 1718, 2356, 2627, 2636, 2843
BstNI CCWGG 8 cut(s) 255, 1121, 1240, 1296, 1479, 1569, 2522, 2618
BstPAI GACNNNNGTC 1 cut(s) 2222
BstPI GGTNACC 1 cut(s) 2096
BstSFI CTRYAG 5 cut(s) 1521, 1848, 1917, 2343, 2540
BstSLI GKGCMC 1 cut(s) 2194
BstV1I GCAGC 2 cut(s) 2554, 2824
BstV2I GAAGAC 1 cut(s) 614
BstX2I RGATCY 1 cut(s) 1693
BstYI RGATCY 1 cut(s) 1693
BstZI CGGCCG 1 cut(s) 2604
Bsu15I ATCGAT 3 cut(s) 27, 393, 1952
Bsu36I CCTNAGG 2 cut(s) 2463, 2507
BsuI GTATCC 2 cut(s) 1566, 2690
BsuTUI ATCGAT 3 cut(s) 27, 393, 1952
BtgI CCRYGG 2 cut(s) 2266, 2674
BtsCI GGATG 8 cut(s) 5, 219, 523, 736, 1984, 2314, 2431, 2667
BtsI GCAGTG 1 cut(s) 1707
BtsIMutI CAGTG 7 cut(s) 45, 1096, 1164, 1419, 1707, 1806, 1845
BtuMI TCGCGA 2 cut(s) 177, 2448
BveI ACCTGC 2 cut(s) 1437, 1528
Cac8I GCNNGC 5 cut(s) 438, 651, 1210, 1723, 2590
CaiI CAGNNNCTG 1 cut(s) 1847
CfoI GCGC 4 cut(s) 641, 1136, 1357, 2809
Cfr42I CCGCGG 1 cut(s) 2677
ClaI ATCGAT 3 cut(s) 27, 393, 1952
CseI GACGC 2 cut(s) 377, 1553
Csp6I GTAC 3 cut(s) 1009, 1235, 2760
CviAII CATG 9 cut(s) 79, 566, 745, 779, 1436, 1468, 1685, 2267, 2693
CviQI GTAC 3 cut(s) 1009, 1235, 2760
DraI TTTAAA 1 cut(s) 1762
DrdI GACNNNNNNGTC 1 cut(s) 1794
DseDI GACNNNNNNGTC 1 cut(s) 1794
EaeI YGGCCR 2 cut(s) 2604, 2708
EagI CGGCCG 1 cut(s) 2604
Eam1104I CTCTTC 5 cut(s) 246, 1451, 1848, 2091, 2298
EarI CTCTTC 5 cut(s) 246, 1451, 1848, 2091, 2298
EciI GGCGGA 4 cut(s) 85, 212, 1294, 2160
Ecl136II GAGCTC 3 cut(s) 977, 1186, 1739
EclXI CGGCCG 1 cut(s) 2604
Eco130I CCWWGG 4 cut(s) 278, 1343, 1589, 2266
Eco24I GRGCYC 5 cut(s) 979, 1188, 1741, 2240, 2756
Eco47III AGCGCT 1 cut(s) 1356
Eco52I CGGCCG 1 cut(s) 2604
Eco53kI GAGCTC 3 cut(s) 977, 1186, 1739
Eco57I CTGAAG 2 cut(s) 2322, 2801
Eco81I CCTNAGG 2 cut(s) 2463, 2507
Eco88I CYCGRG 3 cut(s) 314, 2127, 2631
Eco91I GGTNACC 1 cut(s) 2096
EcoICRI GAGCTC 3 cut(s) 977, 1186, 1739
EcoNI CCTNNNNNAGG 1 cut(s) 1826
EcoO109I RGGNCCY 6 cut(s) 164, 1426, 1934, 2081, 2135, 2459
EcoO65I GGTNACC 1 cut(s) 2096
EcoRII CCWGG 8 cut(s) 253, 1119, 1238, 1294, 1477, 1567, 2520, 2616
EcoT14I CCWWGG 4 cut(s) 278, 1343, 1589, 2266
EcoT38I GRGCYC 5 cut(s) 979, 1188, 1741, 2240, 2756
ErhI CCWWGG 4 cut(s) 278, 1343, 1589, 2266
FaeI CATG 9 cut(s) 82, 569, 748, 782, 1439, 1471, 1688, 2270, 2696
FaqI GGGAC 6 cut(s) 150, 213, 288, 380, 686, 1439
FatI CATG 9 cut(s) 78, 565, 744, 778, 1435, 1467, 1684, 2266, 2692
FauI CCCGC 5 cut(s) 1542, 2071, 2496, 2597, 2681
FblI GTMKAC 1 cut(s) 94
FokI GGATG 7 cut(s) 206, 530, 743, 1991, 2301, 2438, 2654
FriOI GRGCYC 5 cut(s) 979, 1188, 1741, 2240, 2756
FspBI CTAG 8 cut(s) 423, 437, 636, 650, 1050, 1590, 1871, 2054
GlaI GCGC 4 cut(s) 640, 1135, 1356, 2808
GsaI CCCAGC 2 cut(s) 864, 1019
GsuI CTGGAG 3 cut(s) 451, 664, 909
HaeII RGCGCY 1 cut(s) 1358
HapII CCGG 7 cut(s) 487, 700, 1028, 1484, 1609, 1635, 2757
HgaI GACGC 2 cut(s) 377, 1553
HhaI GCGC 4 cut(s) 641, 1136, 1357, 2809
Hin1I GRCGYC 2 cut(s) 97, 2596
Hin1II CATG 9 cut(s) 82, 569, 748, 782, 1439, 1471, 1688, 2270, 2696
Hin6I GCGC 4 cut(s) 639, 1134, 1355, 2807
HinP1I GCGC 4 cut(s) 639, 1134, 1355, 2807
HindIII AAGCTT 1 cut(s) 1878
HpaII CCGG 7 cut(s) 487, 700, 1028, 1484, 1609, 1635, 2757
HphI GGTGA 6 cut(s) 155, 269, 373, 917, 2080, 2108
Hpy166II GTNNAC 4 cut(s) 95, 1094, 1323, 1417
Hpy8I GTNNAC 4 cut(s) 95, 1094, 1323, 1417
Hpy99I CGWCG 6 cut(s) 903, 1134, 1751, 2228, 2598, 2824
HpyAV CCTTC 6 cut(s) 904, 1560, 2424, 2521, 2697, 2784
HpyCH4III ACNGT 6 cut(s) 307, 1421, 1849, 2152, 2183, 2224
HpyCH4IV ACGT 5 cut(s) 97, 2103, 2596, 2743, 2822
HpyCH4V TGCA 9 cut(s) 431, 565, 778, 857, 1523, 1725, 1930, 2324, 2542
HpyF10VI GCNNNNNNNGC 9 cut(s) 138, 437, 650, 1473, 1718, 2356, 2627, 2636, 2843
HpySE526I ACGT 5 cut(s) 97, 2103, 2596, 2743, 2822
Hsp92I GRCGYC 2 cut(s) 97, 2596
Hsp92II CATG 9 cut(s) 82, 569, 748, 782, 1439, 1471, 1688, 2270, 2696
HspAI GCGC 4 cut(s) 639, 1134, 1355, 2807
KflI GGGWCCC 1 cut(s) 164
Kpn2I TCCGGA 1 cut(s) 1483
KpnI GGTACC 1 cut(s) 1238
KspI CCGCGG 1 cut(s) 2677
LguI GCTCTTC 2 cut(s) 246, 1848
LmnI GCTCC 4 cut(s) 982, 1611, 2260, 2759
Lsp1109I GCAGC 2 cut(s) 2554, 2824
LweI GCATC 4 cut(s) 14, 184, 844, 1014
MaeI CTAG 8 cut(s) 423, 437, 636, 650, 1050, 1590, 1871, 2054
MaeII ACGT 5 cut(s) 97, 2103, 2596, 2743, 2822
MaeIII GTNAC 6 cut(s) 307, 865, 1178, 1994, 2096, 2404
MbiI CCGCTC 2 cut(s) 446, 659
MflI RGATCY 1 cut(s) 1693
MhlI GDGCHC 6 cut(s) 979, 1188, 1741, 2194, 2240, 2756
MlsI TGGCCA 1 cut(s) 2710
MluCI AATT 9 cut(s) 587, 720, 785, 800, 845, 1214, 1261, 1860, 2546
MluNI TGGCCA 1 cut(s) 2710
MlyI GAGTC 4 cut(s) 166, 1122, 1324, 2502
MmeI TCCRAC 3 cut(s) 2379, 2805, 2843
Mox20I TGGCCA 1 cut(s) 2710
MroI TCCGGA 1 cut(s) 1483
MroXI GAANNNNTTC 1 cut(s) 17
MscI TGGCCA 1 cut(s) 2710
MseI TTAA 3 cut(s) 1761, 1946, 2559
Msp20I TGGCCA 1 cut(s) 2710
MspA1I CMGCKG 1 cut(s) 2676
MspI CCGG 7 cut(s) 487, 700, 1028, 1484, 1609, 1635, 2757
Mva1269I GAATGC 4 cut(s) 59, 582, 795, 1788
MvaI CCWGG 8 cut(s) 255, 1121, 1240, 1296, 1479, 1569, 2522, 2618
MwoI GCNNNNNNNGC 9 cut(s) 138, 437, 650, 1473, 1718, 2356, 2627, 2636, 2843
NciI CCSGG 2 cut(s) 1609, 1636
NcoI CCATGG 1 cut(s) 2266
NheI GCTAGC 2 cut(s) 436, 649
NlaIII CATG 9 cut(s) 82, 569, 748, 782, 1439, 1471, 1688, 2270, 2696
NmuCI GTSAC 4 cut(s) 307, 865, 1994, 2096
NruI TCGCGA 2 cut(s) 177, 2448
PaeR7I CTCGAG 2 cut(s) 2127, 2631
PciSI GCTCTTC 2 cut(s) 246, 1848
PcsI WCGNNNNNNNCGW 3 cut(s) 94, 1446, 1561
PctI GAATGC 4 cut(s) 59, 582, 795, 1788
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 7 cut(s) 932, 1253, 1336, 1498, 1676, 2249, 2828
PflMI CCANNNNNTGG 1 cut(s) 2662
Ple19I CGATCG 2 cut(s) 181, 1735
PleI GAGTC 4 cut(s) 165, 1121, 1323, 2501
PpsI GAGTC 4 cut(s) 165, 1121, 1323, 2501
Ppu21I YACGTR 2 cut(s) 2104, 2744
PpuMI RGGWCCY 5 cut(s) 164, 1426, 1934, 2135, 2459
PshAI GACNNNNGTC 1 cut(s) 2222
PshBI ATTAAT 1 cut(s) 2559
Psp124BI GAGCTC 3 cut(s) 979, 1188, 1741
Psp5II RGGWCCY 5 cut(s) 164, 1426, 1934, 2135, 2459
Psp6I CCWGG 8 cut(s) 253, 1119, 1238, 1294, 1477, 1567, 2520, 2616
PspEI GGTNACC 1 cut(s) 2096
PspFI CCCAGC 2 cut(s) 860, 1015
PspGI CCWGG 8 cut(s) 253, 1119, 1238, 1294, 1477, 1567, 2520, 2616
PspPPI RGGWCCY 5 cut(s) 164, 1426, 1934, 2135, 2459
PstI CTGCAG 2 cut(s) 1525, 2544
PstNI CAGNNNCTG 1 cut(s) 1847
PsuI RGATCY 1 cut(s) 1693
PvuI CGATCG 2 cut(s) 181, 1735
RruI TCGCGA 2 cut(s) 177, 2448
RsaI GTAC 3 cut(s) 1010, 1236, 2761
RsaNI GTAC 3 cut(s) 1009, 1235, 2760
SacI GAGCTC 3 cut(s) 979, 1188, 1741
SacII CCGCGG 1 cut(s) 2677
SapI GCTCTTC 2 cut(s) 246, 1848
SaqAI TTAA 3 cut(s) 1761, 1946, 2559
SchI GAGTC 4 cut(s) 166, 1122, 1324, 2502
SduI GDGCHC 6 cut(s) 979, 1188, 1741, 2194, 2240, 2756
SfaNI GCATC 4 cut(s) 14, 184, 844, 1014
SfcI CTRYAG 5 cut(s) 1521, 1848, 1917, 2343, 2540
Sfr274I CTCGAG 2 cut(s) 2127, 2631
Sfr303I CCGCGG 1 cut(s) 2677
SgrBI CCGCGG 1 cut(s) 2677
SlaI CTCGAG 2 cut(s) 2127, 2631
SmlI CTYRAG 4 cut(s) 1502, 2127, 2631, 2795
SmoI CTYRAG 4 cut(s) 1502, 2127, 2631, 2795
Sse9I AATT 9 cut(s) 587, 720, 785, 800, 845, 1214, 1261, 1860, 2546
SspMI CTAG 8 cut(s) 423, 437, 636, 650, 1050, 1590, 1871, 2054
SstI GAGCTC 3 cut(s) 979, 1188, 1741
StyI CCWWGG 4 cut(s) 278, 1343, 1589, 2266
TaaI ACNGT 6 cut(s) 307, 1421, 1849, 2152, 2183, 2224
TaiI ACGT 5 cut(s) 100, 2106, 2599, 2746, 2825
TaqII GACCGA 1 cut(s) 375
TasI AATT 9 cut(s) 587, 720, 785, 800, 845, 1214, 1261, 1860, 2546
TatI WGTACW 1 cut(s) 1008
TfiI GAWTC 7 cut(s) 932, 1253, 1336, 1498, 1676, 2249, 2828
Tru1I TTAA 3 cut(s) 1761, 1946, 2559
Tru9I TTAA 3 cut(s) 1761, 1946, 2559
TscAI CASTG 7 cut(s) 52, 1096, 1171, 1419, 1714, 1813, 1852
TseFI GTSAC 4 cut(s) 307, 865, 1994, 2096
TseI GCWGC 2 cut(s) 2542, 2837
Tsp45I GTSAC 4 cut(s) 307, 865, 1994, 2096
TspDTI ATGAA 6 cut(s) 54, 1704, 1785, 1995, 2307, 2589
TspGWI ACGGA 2 cut(s) 887, 1784
TspRI CASTG 7 cut(s) 52, 1096, 1171, 1419, 1714, 1813, 1852
Van91I CCANNNNNTGG 1 cut(s) 2662
VspI ATTAAT 1 cut(s) 2559
XagI CCTNNNNNAGG 1 cut(s) 1826
XapI RAATTY 1 cut(s) 845
XcmI CCANNNNNNNNNTGG 1 cut(s) 1144
XhoI CTCGAG 2 cut(s) 2127, 2631
XmaJI CCTAGG 1 cut(s) 1589
XmiI GTMKAC 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 8 cut(s) 423, 437, 636, 650, 1050, 1590, 1871, 2054
ZraI GACGTC 2 cut(s) 98, 2597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.