Rmu_sc0004835.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004835.1
OG0000214
Physical Location & Seq
Forward (+)
33309 .. 33608
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004835.1_g000007.1.cds

Sequence Viewer

Length: 300 bp
atggacatctcccacgatattttaaatgaacgatccatccgcctgagggaactacaaatccaaaggtccgacttcaaacttcagatcgaggacctccaagcccatttagcctttgttgagaatgcgattgttgcaaaagaagctcaactcgatgagcctttggctgcttctgaagaaatgggcagcaaactggcccatatcagagatcgggccactcaggctgaagctggtgccatagcagcgaaacgccacgtggaggaactttgtttgaaattgagctttgcgggccaatctttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.06

Weight (kDa)

5.3

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AciI CCGC 2 cut(s) 40, 284
AclWI GGATC 1 cut(s) 27
AcuI CTGAAG 3 cut(s) 65, 192, 243
AcvI CACGTG 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 46, 256
AgsI TTSAA 2 cut(s) 76, 271
AloI GAACNNNNNNTCC 4 cut(s) 21, 42, 53, 74
AluBI AGCT 3 cut(s) 143, 227, 279
AluI AGCT 3 cut(s) 143, 227, 279
AlwI GGATC 1 cut(s) 27
AoxI GGCC 3 cut(s) 192, 210, 286
ApeKI GCWGC 3 cut(s) 164, 183, 239
AspS9I GGNCC 5 cut(s) 66, 91, 193, 210, 286
AvaII GGWCC 2 cut(s) 66, 91
AxyI CCTNAGG 1 cut(s) 44
BanI GGYRCC 1 cut(s) 230
BbrPI CACGTG 1 cut(s) 253
BbvI GCAGC 3 cut(s) 151, 195, 251
BccI CCATC 1 cut(s) 44
BglI GCCNNNNNGGC 1 cut(s) 218
BisI GCNGC 3 cut(s) 165, 184, 240
BlsI GCNGC 3 cut(s) 166, 185, 241
Bme18I GGWCC 2 cut(s) 66, 91
BmgT120I GGNCC 5 cut(s) 66, 91, 193, 210, 286
BmiI GGNNCC 1 cut(s) 232
BsaAI YACGTR 1 cut(s) 253
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 256
Bse1I ACTGG 1 cut(s) 195
Bse21I CCTNAGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 2 cut(s) 46, 256
BseMII CTCAG 2 cut(s) 35, 230
BseNI ACTGG 1 cut(s) 195
BseXI GCAGC 3 cut(s) 151, 195, 251
BshFI GGCC 3 cut(s) 194, 212, 288
BshNI GGYRCC 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 46, 256
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 3 cut(s) 194, 212, 288
Bsp143I GATC 3 cut(s) 32, 84, 205
BspACI CCGC 2 cut(s) 40, 284
BspANI GGCC 3 cut(s) 194, 212, 288
BspCNI CTCAG 2 cut(s) 36, 229
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 195
BssMI GATC 3 cut(s) 32, 84, 205
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 44, 216
BstF5I GGATG 1 cut(s) 36
BstKTI GATC 3 cut(s) 35, 87, 208
BstMBI GATC 3 cut(s) 32, 84, 205
BstMWI GCNNNNNNNGC 6 cut(s) 107, 131, 140, 218, 239, 285
BstV1I GCAGC 3 cut(s) 151, 195, 251
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 3 cut(s) 194, 212, 288
BtsCI GGATG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 286
Cfr13I GGNCC 5 cut(s) 66, 91, 193, 210, 286
DdeI CTNAG 2 cut(s) 44, 216
DpnI GATC 3 cut(s) 34, 86, 207
DpnII GATC 3 cut(s) 32, 84, 205
DraI TTTAAA 1 cut(s) 24
EciI GGCGGA 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 66, 91
Eco57I CTGAAG 3 cut(s) 65, 192, 243
Eco72I CACGTG 1 cut(s) 253
Eco81I CCTNAGG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 91
FaiI YATR 2 cut(s) 198, 236
FauI CCCGC 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 165, 184, 240
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 3 cut(s) 165, 184, 240
GluI GCNGC 3 cut(s) 165, 184, 240
HaeIII GGCC 3 cut(s) 194, 212, 288
Hpy188I TCNGA 4 cut(s) 70, 84, 172, 203
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 6 cut(s) 107, 131, 140, 218, 239, 285
HpyF3I CTNAG 2 cut(s) 44, 216
HpySE526I ACGT 1 cut(s) 252
Kzo9I GATC 3 cut(s) 32, 84, 205
LpnPI CCDG 4 cut(s) 56, 176, 203, 213
Lsp1109I GCAGC 3 cut(s) 151, 195, 251
MaeII ACGT 1 cut(s) 252
MalI GATC 3 cut(s) 34, 86, 207
MboI GATC 3 cut(s) 32, 84, 205
MboII GAAGA 1 cut(s) 185
MluCI AATT 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 4 cut(s) 39, 82, 104, 250
MseI TTAA 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 127
MwoI GCNNNNNNNGC 6 cut(s) 107, 131, 140, 218, 239, 285
NdeII GATC 3 cut(s) 32, 84, 205
NlaIV GGNNCC 1 cut(s) 232
PctI GAATGC 1 cut(s) 127
PkrI GCNGC 3 cut(s) 166, 185, 241
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
Ppu21I YACGTR 1 cut(s) 253
PpuMI RGGWCCY 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 91
PspCI CACGTG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 5 cut(s) 66, 91, 193, 210, 286
PspPPI RGGWCCY 1 cut(s) 91
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 3 cut(s) 165, 184, 240
Sau3AI GATC 3 cut(s) 32, 84, 205
Sau96I GGNCC 5 cut(s) 66, 91, 193, 210, 286
SetI ASST 6 cut(s) 68, 96, 145, 229, 255, 281
SinI GGWCC 2 cut(s) 66, 91
Sse9I AATT 1 cut(s) 272
SsiI CCGC 2 cut(s) 40, 284
TaiI ACGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 87, 150
TasI AATT 1 cut(s) 272
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseI GCWGC 3 cut(s) 164, 183, 239
TspDTI ATGAA 1 cut(s) 42
VpaK11BI GGWCC 2 cut(s) 66, 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.