Rroxscaffold_5G00343640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000214
Physical Location & Seq
Forward (+)
13208623 .. 13209072
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00343640.1

Sequence Viewer

Length: 450 bp
ATGAACTTGATATGGCCCGCCGACGACAATCGGCCGCGAACACCCGGCCTCACGACGCTCGAGGCTTTGAATAGTGTCTCTCGAGAAATGGACATCTCCCGCGATATTTTAAATGAACGAGCTAGCCATCCGCTGCGGGAACTACAAATCCAACGGTCCGACTTCAAACTTCGGATCGAGGACCTCAGAGCCCATTTAGCCTCTGTTGAGAATGCGATTGTTGCGGAAGAAGCTCAACTCGATGAACCTTTGGCTTCTTCGAAGAAATGGGCCGCAACACGGCCCGTATCGAGAGAACGGGCCACTCGAGCCGGGCGGTGCCATTGTGGCAAAACGCCACGTGGAGGAACTTTGTTTGAAATTGAGCTTTGCGGGCCAATCTCTGTAGGCCTCCTCGAAAATCGTTCGGTCTCCTCACATGCTATTAATCCCTTCTTTTTCGAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.7

Weight (kDa)

6.43

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AccII CGCG 2 cut(s) 37, 102
AciI CCGC 9 cut(s) 18, 35, 100, 131, 136, 224, 273, 316, 372
AclWI GGATC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 32
AcvI CACGTG 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 279, 344
AgsI TTSAA 3 cut(s) 70, 166, 359
AloI GAACNNNNNNTCC 2 cut(s) 132, 164
AluBI AGCT 3 cut(s) 122, 233, 367
AluI AGCT 3 cut(s) 122, 233, 367
Alw26I GTCTC 2 cut(s) 82, 415
AlwI GGATC 1 cut(s) 182
Ama87I CYCGRG 3 cut(s) 59, 81, 306
AoxI GGCC 8 cut(s) 14, 32, 46, 270, 281, 300, 374, 388
ApeKI GCWGC 1 cut(s) 133
AseI ATTAAT 1 cut(s) 426
AspS9I GGNCC 7 cut(s) 15, 156, 181, 270, 282, 300, 374
AsuC2I CCSGG 2 cut(s) 45, 313
AsuII TTCGAA 1 cut(s) 260
AsuNHI GCTAGC 1 cut(s) 122
AvaI CYCGRG 3 cut(s) 59, 81, 306
AvaII GGWCC 2 cut(s) 156, 181
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 193
BbrPI CACGTG 1 cut(s) 341
BbvI GCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 135
BceAI ACGGC 1 cut(s) 296
BcnI CCSGG 2 cut(s) 45, 313
BcoDI GTCTC 2 cut(s) 82, 415
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 327
BisI GCNGC 3 cut(s) 35, 134, 273
BlsI GCNGC 3 cut(s) 36, 135, 274
Bme1390I CCNGG 2 cut(s) 45, 313
Bme18I GGWCC 2 cut(s) 156, 181
BmeT110I CYCGRG 3 cut(s) 59, 81, 306
BmgT120I GGNCC 7 cut(s) 15, 156, 181, 270, 282, 300, 374
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 2 cut(s) 45, 313
BmtI GCTAGC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 260
BpuMI CCSGG 2 cut(s) 45, 313
BsaAI YACGTR 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 415
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 344
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 279, 344
BseMII CTCAG 1 cut(s) 199
BseRI GAGGAG 2 cut(s) 383, 403
BseX3I CGGCCG 1 cut(s) 32
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 2 cut(s) 37, 102
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 8 cut(s) 16, 34, 48, 272, 283, 302, 376, 390
BshNI GGYRCC 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 35
BsiHKCI CYCGRG 3 cut(s) 59, 81, 306
BsiSI CCGG 2 cut(s) 45, 312
BslI CCNNNNNNNGG 2 cut(s) 279, 344
BsmAI GTCTC 2 cut(s) 82, 415
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 8 cut(s) 16, 34, 48, 272, 283, 302, 376, 390
Bso31I GGTCTC 1 cut(s) 415
BsoBI CYCGRG 3 cut(s) 59, 81, 306
Bsp119I TTCGAA 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 193
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 9 cut(s) 18, 35, 100, 131, 136, 224, 273, 316, 372
BspANI GGCC 8 cut(s) 16, 34, 48, 272, 283, 302, 376, 390
BspCNI CTCAG 1 cut(s) 198
BspFNI CGCG 2 cut(s) 37, 102
BspLI GGNNCC 1 cut(s) 320
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 1 cut(s) 182
BspT104I TTCGAA 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 415
BssMI GATC 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 341
BstBI TTCGAA 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 18, 124, 374
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 2 cut(s) 37, 102
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 2 cut(s) 82, 415
BstMBI GATC 1 cut(s) 174
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 6 cut(s) 197, 221, 230, 308, 327, 373
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 2 cut(s) 43, 311
BstSFI CTRYAG 1 cut(s) 384
BstUI CGCG 2 cut(s) 37, 102
BstV1I GCAGC 1 cut(s) 120
BstZI CGGCCG 1 cut(s) 32
BsuRI GGCC 8 cut(s) 16, 34, 48, 272, 283, 302, 376, 390
BtsCI GGATG 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 18, 124, 374
Cfr13I GGNCC 7 cut(s) 15, 156, 181, 270, 282, 300, 374
CpoI CGGWCCG 1 cut(s) 156
CseI GACGC 1 cut(s) 64
CspI CGGWCCG 1 cut(s) 156
CviAII CATG 1 cut(s) 419
DdeI CTNAG 1 cut(s) 185
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
DraI TTTAAA 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 32
EagI CGGCCG 1 cut(s) 32
EclXI CGGCCG 1 cut(s) 32
Eco147I AGGCCT 1 cut(s) 390
Eco24I GRGCYC 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 415
Eco47I GGWCC 2 cut(s) 156, 181
Eco52I CGGCCG 1 cut(s) 32
Eco72I CACGTG 1 cut(s) 341
Eco88I CYCGRG 3 cut(s) 59, 81, 306
EcoO109I RGGNCCY 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 1 cut(s) 422
FaiI YATR 2 cut(s) 13, 420
FatI CATG 1 cut(s) 418
FauI CCCGC 4 cut(s) 25, 107, 129, 365
Fnu4HI GCNGC 3 cut(s) 35, 134, 273
FokI GGATG 1 cut(s) 114
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 3 cut(s) 35, 134, 273
FspBI CTAG 1 cut(s) 123
GluI GCNGC 3 cut(s) 35, 134, 273
HaeIII GGCC 8 cut(s) 16, 34, 48, 272, 283, 302, 376, 390
HapII CCGG 2 cut(s) 45, 312
HgaI GACGC 1 cut(s) 64
Hin1II CATG 1 cut(s) 422
HpaII CCGG 2 cut(s) 45, 312
Hpy188I TCNGA 3 cut(s) 160, 174, 188
Hpy188III TCNNGA 5 cut(s) 52, 81, 83, 291, 442
Hpy99I CGWCG 2 cut(s) 26, 58
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4IV ACGT 1 cut(s) 340
HpyF10VI GCNNNNNNNGC 6 cut(s) 197, 221, 230, 308, 327, 373
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 340
Hsp92II CATG 1 cut(s) 422
Kzo9I GATC 1 cut(s) 174
LpnPI CCDG 2 cut(s) 58, 325
Lsp1109I GCAGC 1 cut(s) 120
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 340
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 3 cut(s) 239, 249, 274
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 1 cut(s) 360
MmeI TCCRAC 2 cut(s) 175, 183
MnlI CCTC 9 cut(s) 55, 59, 172, 194, 211, 338, 401, 404, 424
MseI TTAA 3 cut(s) 110, 426, 448
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 2 cut(s) 45, 312
MspR9I CCNGG 2 cut(s) 45, 313
Mva1269I GAATGC 1 cut(s) 217
MvnI CGCG 2 cut(s) 37, 102
MwoI GCNNNNNNNGC 6 cut(s) 197, 221, 230, 308, 327, 373
NciI CCSGG 2 cut(s) 45, 313
NdeII GATC 1 cut(s) 174
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 422
NlaIV GGNNCC 1 cut(s) 320
NspI RCATGY 1 cut(s) 422
NspV TTCGAA 1 cut(s) 260
PaeR7I CTCGAG 3 cut(s) 59, 81, 306
PceI AGGCCT 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PctI GAATGC 1 cut(s) 217
PkrI GCNGC 3 cut(s) 36, 135, 274
PmaCI CACGTG 1 cut(s) 341
PmlI CACGTG 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 341
PpuMI RGGWCCY 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 426
Psp5II RGGWCCY 1 cut(s) 181
PspCI CACGTG 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 320
PspPI GGNCC 7 cut(s) 15, 156, 181, 270, 282, 300, 374
PspPPI RGGWCCY 1 cut(s) 181
PspXI VCTCGAGB 2 cut(s) 59, 306
Rsr2I CGGWCCG 1 cut(s) 156
RsrII CGGWCCG 1 cut(s) 156
SaqAI TTAA 3 cut(s) 110, 426, 448
SatI GCNGC 3 cut(s) 35, 134, 273
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 7 cut(s) 15, 156, 181, 270, 282, 300, 374
ScrFI CCNGG 2 cut(s) 45, 313
SduI GDGCHC 1 cut(s) 193
SetI ASST 6 cut(s) 124, 186, 235, 250, 343, 369
SfcI CTRYAG 1 cut(s) 384
Sfr274I CTCGAG 3 cut(s) 59, 81, 306
SfuI TTCGAA 1 cut(s) 260
SinI GGWCC 2 cut(s) 156, 181
SlaI CTCGAG 3 cut(s) 59, 81, 306
SmlI CTYRAG 3 cut(s) 59, 81, 306
SmoI CTYRAG 3 cut(s) 59, 81, 306
Sse9I AATT 1 cut(s) 360
SseBI AGGCCT 1 cut(s) 390
SsiI CCGC 9 cut(s) 18, 35, 100, 131, 136, 224, 273, 316, 372
SspMI CTAG 1 cut(s) 123
StuI AGGCCT 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 43, 311
TaaI ACNGT 1 cut(s) 156
TaiI ACGT 1 cut(s) 343
TaqI TCGA 9 cut(s) 60, 82, 177, 240, 260, 290, 307, 396, 441
TaqII GACCGA 1 cut(s) 397
TasI AATT 1 cut(s) 360
TauI GCSGC 2 cut(s) 37, 275
Tru1I TTAA 3 cut(s) 110, 426, 448
Tru9I TTAA 3 cut(s) 110, 426, 448
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 17, 129, 258
VpaK11BI GGWCC 2 cut(s) 156, 181
VspI ATTAAT 1 cut(s) 426
XceI RCATGY 1 cut(s) 422
XhoI CTCGAG 3 cut(s) 59, 81, 306
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.